Wall clock time and date at job start Mon Mar 30 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47279 * 2 1 4 4 C 1.50700 * 109.47183 * 119.99311 * 2 1 3 5 5 H 1.07998 * 120.00076 * 119.99988 * 4 2 1 6 6 C 1.37879 * 120.00043 * 300.00354 * 4 2 1 7 7 N 1.31510 * 120.00178 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99937 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47325 * 89.99795 * 8 6 4 10 10 H 1.48506 * 109.46788 * 209.99924 * 8 6 4 11 11 H 1.48502 * 109.47225 * 329.99638 * 8 6 4 12 12 C 1.50693 * 109.47756 * 239.99716 * 2 1 3 13 13 O 1.21286 * 119.99620 * 334.62748 * 12 2 1 14 14 N 1.34770 * 120.00659 * 154.63362 * 12 2 1 15 15 C 1.48868 * 127.60640 * 354.34659 * 14 12 2 16 16 C 1.54435 * 104.50755 * 219.46708 * 15 14 12 17 17 H 1.09007 * 110.32964 * 217.76528 * 16 15 14 18 18 C 1.54258 * 108.75269 * 96.79454 * 16 15 14 19 19 S 1.84049 * 102.45142 * 218.53006 * 18 16 15 20 20 C 1.84052 * 94.38759 * 36.24083 * 19 18 16 21 21 C 1.54252 * 105.04650 * 336.47143 * 16 15 14 22 22 C 1.53000 * 110.32161 * 241.03623 * 21 16 15 23 23 C 1.48174 * 127.83885 * 174.78806 * 14 12 2 24 24 H 1.09002 * 109.46785 * 65.63539 * 1 2 3 25 25 H 1.09005 * 109.46667 * 185.62601 * 1 2 3 26 26 H 1.08996 * 109.47061 * 305.63191 * 1 2 3 27 27 H 0.97004 * 120.00180 * 179.97438 * 7 6 4 28 28 H 1.09006 * 110.13689 * 100.86252 * 15 14 12 29 29 H 1.08995 * 110.73705 * 338.37387 * 15 14 12 30 30 H 1.09002 * 110.81565 * 100.28703 * 18 16 15 31 31 H 1.09005 * 110.97741 * 336.84533 * 18 16 15 32 32 H 1.09005 * 110.81361 * 81.99338 * 20 19 18 33 33 H 1.08999 * 110.81735 * 205.32506 * 20 19 18 34 34 H 1.08998 * 109.46689 * 294.96224 * 22 21 16 35 35 H 1.09005 * 109.46803 * 54.96159 * 22 21 16 36 36 H 1.08998 * 109.47060 * 174.95997 * 22 21 16 37 37 H 1.09005 * 110.41574 * 21.81250 * 23 14 12 38 38 H 1.08991 * 110.52177 * 259.40201 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1372 -0.8592 3.5566 8 14 0.6246 1.2793 2.6540 9 1 -0.8030 0.8728 2.6996 10 1 0.9757 1.9954 3.9067 11 1 0.8468 2.1766 1.4918 12 6 2.0325 -0.7104 -1.2303 13 8 1.3399 -1.5443 -1.7744 14 7 3.2514 -0.4193 -1.7261 15 6 4.1872 0.6448 -1.2700 16 6 4.7944 1.2103 -2.5725 17 1 5.8482 1.4483 -2.4269 18 6 4.0127 2.4779 -2.9745 19 16 3.9307 2.3291 -4.8071 20 6 3.7455 0.4980 -4.7915 21 6 4.6432 0.0783 -3.6093 22 6 6.0168 -0.3622 -4.1193 23 6 3.9565 -1.0784 -2.8504 24 1 -0.3633 0.4240 -0.9362 25 1 -0.3633 -1.0228 0.1008 26 1 -0.3633 0.5987 0.8352 27 1 1.9031 -0.5275 4.4376 28 1 4.9675 0.2144 -0.6421 29 1 3.6508 1.4251 -0.7303 30 1 4.5560 3.3768 -2.6829 31 1 3.0128 2.4739 -2.5405 32 1 2.7086 0.2151 -4.6097 33 1 4.1057 0.0642 -5.7243 34 1 6.4817 0.4585 -4.6657 35 1 6.6467 -0.6387 -3.2737 36 1 5.9006 -1.2200 -4.7816 37 1 3.2443 -1.5888 -3.4989 38 1 4.7000 -1.7816 -2.4755 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891178677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:16 Heat of formation + Delta-G solvation = -53.564110 kcal Electronic energy + Delta-G solvation = -19586.137497 eV Core-core repulsion = 16746.719401 eV Total energy + Delta-G solvation = -2839.418096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38379 -39.40859 -35.86317 -34.67873 -33.24144 -32.75578 -28.73784 -27.94331 -27.09965 -27.05163 -24.18626 -23.01166 -20.35292 -19.76489 -18.91595 -18.19370 -17.44656 -16.86418 -16.73291 -16.02342 -15.57632 -15.25307 -15.08478 -14.95036 -14.46789 -14.39736 -13.95488 -13.65887 -13.54744 -13.19128 -13.00332 -12.87624 -12.77315 -12.69117 -12.60016 -12.14465 -11.93578 -11.80297 -11.75488 -11.50807 -11.33474 -11.05944 -10.81276 -10.56423 -9.61332 -8.75017 -8.35376 -6.43765 0.90450 1.25932 1.34191 1.35370 1.47430 1.77201 2.09964 2.28680 2.99243 3.35043 3.37471 3.50315 3.86300 3.96397 4.00934 4.13509 4.28089 4.38733 4.50722 4.56841 4.58074 4.61951 4.63251 4.69829 4.73426 4.78877 4.83360 4.95119 5.02319 5.06103 5.17133 5.28366 5.37102 5.46465 5.49482 6.12284 6.52641 6.62847 7.20053 7.30090 8.80650 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.006033 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.208902 B = 4640.195989 C = 4815.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.028 0.972 6 C 0.026 3.974 7 N -0.939 5.939 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.236 1.236 12 C 0.553 3.447 13 O -0.596 6.596 14 N -0.626 5.626 15 C 0.106 3.894 16 C -0.089 4.089 17 H 0.132 0.868 18 C -0.053 4.053 19 S -0.327 6.327 20 C -0.046 4.046 21 C -0.064 4.064 22 C -0.128 4.128 23 C 0.108 3.892 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.271 0.729 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 8.114 -14.778 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.046 0.954 6 C -0.173 4.173 7 N -0.578 5.578 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.218 1.218 11 H -0.159 1.159 12 C 0.345 3.655 13 O -0.477 6.477 14 N -0.359 5.359 15 C -0.017 4.017 16 C -0.109 4.109 17 H 0.150 0.850 18 C -0.201 4.201 19 S -0.099 6.099 20 C -0.194 4.194 21 C -0.066 4.066 22 C -0.185 4.185 23 C -0.016 4.016 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.261 8.501 -15.780 19.736 hybrid contribution -0.848 -0.807 1.586 1.972 sum 7.413 7.693 -14.194 17.765 Atomic orbital electron populations 1.21899 0.96170 1.01088 0.99939 1.19255 0.94361 0.97458 0.91072 0.91825 1.20569 1.32353 1.12612 0.89509 0.95377 1.25752 0.96632 1.00049 0.94830 1.70006 1.46770 1.42210 0.98778 0.85875 0.78927 0.79810 0.78149 1.19762 1.21774 1.15934 1.20722 0.79271 0.81631 0.83900 1.90542 1.57631 1.37015 1.62548 1.49128 1.16156 1.36068 1.34569 1.22836 0.92367 0.90215 0.96329 1.22908 1.02258 0.92203 0.93561 0.85022 1.24356 1.03492 1.01636 0.90629 1.87988 1.96864 1.12204 1.12824 1.24334 1.01844 0.91294 1.01956 1.22144 0.97168 0.94505 0.92801 1.21841 0.92379 1.02308 1.02004 1.22656 0.95526 0.95324 0.88072 0.92492 0.93824 0.93421 0.92021 0.90130 0.89657 0.85250 0.90384 0.91240 0.85828 0.90432 0.90936 0.91139 0.91243 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.03 71.98 0.58 -5.37 16 2 C 0.00 -0.01 1.85 -12.29 -0.02 -0.03 16 3 H 0.06 2.68 5.68 -2.38 -0.01 2.67 16 4 C -0.51 -28.56 9.13 25.60 0.23 -28.32 16 5 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 6 C 0.03 1.46 5.45 84.66 0.46 1.93 16 7 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 8 Si 0.95 42.19 24.31 68.60 1.67 43.86 16 9 H -0.27 -11.89 6.92 99.48 0.69 -11.21 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.24 -9.31 6.53 99.48 0.65 -8.66 16 12 C 0.55 24.78 6.95 87.66 0.61 25.39 16 13 O -0.60 -30.25 16.47 -3.05 -0.05 -30.30 16 14 N -0.63 -21.84 3.33 -805.81 -2.69 -24.53 16 15 C 0.11 2.87 6.30 86.41 0.54 3.41 16 16 C -0.09 -1.71 3.13 -9.46 -0.03 -1.74 16 17 H 0.13 1.84 7.70 -2.38 -0.02 1.83 16 18 C -0.05 -1.07 6.80 72.41 0.49 -0.57 16 19 S -0.33 -7.30 23.27 -56.49 -1.31 -8.61 16 20 C -0.05 -0.97 6.34 72.41 0.46 -0.51 16 21 C -0.06 -1.25 0.85 -50.84 -0.04 -1.29 16 22 C -0.13 -1.75 8.05 71.98 0.58 -1.17 16 23 C 0.11 2.95 6.03 86.55 0.52 3.47 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 2.09 8.05 -2.38 -0.02 2.07 16 26 H 0.05 2.04 3.44 -2.39 -0.01 2.03 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.09 2.38 6.11 -2.39 -0.01 2.37 16 30 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 1.83 7.64 -2.38 -0.02 1.81 16 32 H 0.07 1.79 7.63 -2.38 -0.02 1.77 16 33 H 0.12 2.08 7.84 -2.39 -0.02 2.06 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 2.08 7.31 -2.38 -0.02 2.07 16 38 H 0.08 2.04 7.86 -2.39 -0.02 2.02 16 Total: -1.00 -69.96 305.21 3.27 -66.69 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.97 Total: 13.95 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.38 Total: -4.80 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.39 Total: -80.78 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.67 Total: 43.86 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.31 Total: -8.61 kcal Total: -69.96 3.27 -66.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891178677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.124 kcal (2) G-P(sol) polarization free energy of solvation -69.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds