Wall clock time and date at job start Mon Mar 30 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47253 * 239.99498 * 2 1 3 5 5 C 1.52992 * 109.47080 * 175.00134 * 4 2 1 6 6 O 1.42893 * 109.47150 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46844 * 119.99720 * 2 1 3 8 8 C 1.39922 * 120.00349 * 275.00114 * 7 2 1 9 9 C 1.38721 * 120.07509 * 0.29398 * 8 7 2 10 10 C 1.38214 * 120.01279 * 180.25281 * 9 8 7 11 11 C 1.38527 * 120.17759 * 359.45097 * 10 9 8 12 12 F 1.35104 * 119.92222 * 180.25033 * 11 10 9 13 13 C 1.38357 * 120.15791 * 0.27563 * 11 10 9 14 14 C 1.38713 * 119.98111 * 0.02562 * 13 11 10 15 15 O 1.35800 * 120.08838 * 179.97438 * 14 13 11 16 16 C 1.34804 * 116.99866 * 354.39698 * 15 14 13 17 17 H 1.08003 * 119.99837 * 5.06256 * 16 15 14 18 18 C 1.38629 * 119.99889 * 185.06845 * 16 15 14 19 19 N 1.31575 * 119.99717 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00164 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46838 * 90.00115 * 20 18 16 22 22 H 1.48502 * 109.47005 * 210.00376 * 20 18 16 23 23 H 1.48497 * 109.46890 * 330.00582 * 20 18 16 24 24 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47448 * 300.00374 * 1 2 3 26 26 H 1.09010 * 109.47097 * 60.00338 * 1 2 3 27 27 H 1.08997 * 109.47016 * 295.00847 * 4 2 1 28 28 H 1.09005 * 109.46728 * 55.00484 * 4 2 1 29 29 H 1.08997 * 109.47779 * 300.00246 * 5 4 2 30 30 H 1.09005 * 109.47054 * 60.00549 * 5 4 2 31 31 H 0.96701 * 114.00675 * 180.02562 * 6 5 4 32 32 H 0.97000 * 119.99424 * 94.99903 * 7 2 1 33 33 H 1.08000 * 119.99492 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.91259 * 179.72472 * 10 9 8 35 35 H 1.08005 * 120.00861 * 179.97438 * 13 11 10 36 36 H 0.96998 * 120.00198 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 8 4.0411 -1.2866 -2.4806 7 7 2.0183 -0.6906 1.1962 8 6 2.1519 0.0074 2.4016 9 6 1.8166 1.3519 2.4671 10 6 1.9541 2.0415 3.6571 11 6 2.4155 1.3908 4.7896 12 9 2.5431 2.0686 5.9514 13 6 2.7466 0.0486 4.7338 14 6 2.6171 -0.6483 3.5415 15 8 2.9419 -1.9656 3.4841 16 6 3.4931 -2.5087 4.5880 17 1 3.5826 -1.9228 5.4909 18 6 3.9450 -3.8190 4.5642 19 7 4.4834 -4.3489 5.6415 20 14 3.7895 -4.8324 3.0027 21 1 5.0107 -4.6581 2.1759 22 1 3.6317 -6.2660 3.3566 23 1 2.6026 -4.3787 2.2342 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.7516 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 3.8533 0.4368 -1.3573 30 1 3.9994 -1.0730 -0.4258 31 1 5.0019 -1.2590 -2.5860 32 1 2.2489 -1.6318 1.1527 33 1 1.4525 1.8611 1.5871 34 1 1.6968 3.0893 3.7052 35 1 3.1065 -0.4562 5.6182 36 1 4.7992 -5.2658 5.6250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893437476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:11 Heat of formation + Delta-G solvation = -101.612929 kcal Electronic energy + Delta-G solvation = -20682.552026 eV Core-core repulsion = 17274.837201 eV Total energy + Delta-G solvation = -3407.714825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.11501 -39.52563 -37.81887 -36.69186 -35.58921 -32.47316 -31.85524 -29.55996 -28.93750 -27.34469 -25.34306 -23.31616 -22.31235 -21.36483 -20.27382 -18.17459 -17.90936 -17.38084 -16.58137 -15.89332 -15.38297 -15.06415 -14.93576 -14.57588 -14.38862 -14.05768 -13.83379 -13.77736 -13.26884 -12.83598 -12.77578 -12.40483 -12.19950 -11.99251 -11.96562 -11.49777 -11.35211 -11.10018 -10.97629 -10.80137 -10.52802 -10.38219 -10.01837 -9.58376 -9.40875 -8.93067 -7.88393 -6.62548 -6.46119 -4.10869 1.99291 2.09496 3.15404 3.19355 3.30487 3.78500 4.05385 4.16120 4.33888 4.62455 4.91846 4.94266 5.03010 5.11736 5.15489 5.32869 5.45495 5.49142 5.53477 5.66467 5.74644 5.83780 5.91755 5.99813 6.04258 6.23262 6.31259 6.46414 6.71035 6.92856 6.97355 7.46220 7.52511 7.58713 7.85566 7.98947 8.19624 8.88154 9.47206 10.61636 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.008724 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.399754 B = 3208.663360 C = 5264.926547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.156 3.844 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.074 3.926 6 O -0.579 6.579 7 N -0.744 5.744 8 C 0.153 3.847 9 C -0.145 4.145 10 C -0.189 4.189 11 C 0.086 3.914 12 F -0.155 7.155 13 C -0.226 4.226 14 C 0.126 3.874 15 O -0.216 6.216 16 C -0.385 4.385 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.877 5.877 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.379 0.621 32 H 0.403 0.597 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 8.486 -12.274 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.164 4.164 5 C -0.004 4.004 6 O -0.385 6.385 7 N -0.379 5.379 8 C 0.052 3.948 9 C -0.169 4.169 10 C -0.209 4.209 11 C 0.065 3.935 12 F -0.134 7.134 13 C -0.247 4.247 14 C 0.072 3.928 15 O -0.122 6.122 16 C -0.461 4.461 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.226 0.774 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.691 8.135 -12.504 15.637 hybrid contribution 0.762 -0.632 0.001 0.990 sum -3.928 7.503 -12.503 15.101 Atomic orbital electron populations 1.22290 0.95918 1.02530 1.01953 1.20702 0.93577 0.96618 0.84092 0.90476 1.21786 0.94419 1.02332 0.97830 1.22211 0.94967 0.95655 0.87574 1.86422 1.27217 1.79036 1.45784 1.44469 1.74773 1.12472 1.06152 1.17081 1.01705 0.91255 0.84720 1.19986 1.07296 0.91840 0.97759 1.20371 1.08501 0.99869 0.92141 1.17252 1.04467 0.90217 0.81544 1.91398 1.94292 1.80144 1.47551 1.20936 1.10514 0.93337 0.99909 1.18303 0.98264 0.84726 0.91503 1.83484 1.71030 1.17867 1.39785 1.20727 1.38172 0.97677 0.89517 0.87621 1.24444 0.95252 0.96045 0.98268 1.69650 1.38415 1.15590 1.27869 0.86201 0.79558 0.78794 0.82376 1.19950 1.20765 1.18470 0.92316 0.91780 0.92271 0.90754 0.90164 0.93701 0.92738 0.77423 0.76149 0.85859 0.86335 0.83836 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.42 37.16 0.35 -1.49 16 2 C 0.16 1.87 2.27 -67.93 -0.15 1.72 16 3 H 0.08 0.86 6.50 -51.93 -0.34 0.53 16 4 C -0.13 -1.42 5.12 -26.73 -0.14 -1.56 16 5 C 0.07 0.87 6.93 37.15 0.26 1.13 16 6 O -0.58 -6.89 13.66 -35.23 -0.48 -7.37 16 7 N -0.74 -11.80 4.70 -51.99 -0.24 -12.04 16 8 C 0.15 2.80 6.66 -83.52 -0.56 2.24 16 9 C -0.15 -2.33 8.84 -39.41 -0.35 -2.68 16 10 C -0.19 -3.19 10.02 -39.48 -0.40 -3.59 16 11 C 0.09 1.69 7.29 -39.43 -0.29 1.40 16 12 F -0.15 -3.02 17.26 2.25 0.04 -2.99 16 13 C -0.23 -4.95 9.14 -39.36 -0.36 -5.31 16 14 C 0.13 2.77 6.66 -38.94 -0.26 2.51 16 15 O -0.22 -5.33 7.83 -0.03 0.00 -5.33 16 16 C -0.39 -10.54 9.95 30.88 0.31 -10.23 16 17 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 18 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 19 N -0.88 -24.99 13.96 55.48 0.77 -24.21 16 20 Si 0.91 20.92 28.62 -169.99 -4.86 16.05 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.73 7.75 -51.93 -0.40 0.33 16 31 H 0.38 2.91 9.12 45.56 0.42 3.33 16 32 H 0.40 6.95 7.97 -40.82 -0.33 6.63 16 33 H 0.12 1.61 6.09 -52.49 -0.32 1.29 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.14 3.36 5.64 -52.48 -0.30 3.06 16 36 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -29.52 308.42 -5.43 -34.95 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.62 Total: 10.52 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.68 Total: -14.22 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.53 Total: -36.25 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.48 Total: -12.71 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.52 -5.43 -34.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893437476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.664 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds