Wall clock time and date at job start Mon Mar 30 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47253 * 239.99498 * 2 1 3 5 5 C 1.52992 * 109.47080 * 175.00134 * 4 2 1 6 6 O 1.42893 * 109.47150 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46844 * 119.99720 * 2 1 3 8 8 C 1.39922 * 120.00349 * 275.00114 * 7 2 1 9 9 C 1.38721 * 120.07509 * 0.29398 * 8 7 2 10 10 C 1.38214 * 120.01279 * 180.25281 * 9 8 7 11 11 C 1.38527 * 120.17759 * 359.45097 * 10 9 8 12 12 F 1.35104 * 119.92222 * 180.25033 * 11 10 9 13 13 C 1.38357 * 120.15791 * 0.27563 * 11 10 9 14 14 C 1.38713 * 119.98111 * 0.02562 * 13 11 10 15 15 O 1.35800 * 120.08838 * 179.97438 * 14 13 11 16 16 C 1.34804 * 116.99866 * 354.39698 * 15 14 13 17 17 H 1.08003 * 119.99837 * 5.06256 * 16 15 14 18 18 C 1.38629 * 119.99889 * 185.06845 * 16 15 14 19 19 N 1.31575 * 119.99717 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00164 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46838 * 90.00115 * 20 18 16 22 22 H 1.48502 * 109.47005 * 210.00376 * 20 18 16 23 23 H 1.48497 * 109.46890 * 330.00582 * 20 18 16 24 24 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47448 * 300.00374 * 1 2 3 26 26 H 1.09010 * 109.47097 * 60.00338 * 1 2 3 27 27 H 1.08997 * 109.47016 * 295.00847 * 4 2 1 28 28 H 1.09005 * 109.46728 * 55.00484 * 4 2 1 29 29 H 1.08997 * 109.47779 * 300.00246 * 5 4 2 30 30 H 1.09005 * 109.47054 * 60.00549 * 5 4 2 31 31 H 0.96701 * 114.00675 * 180.02562 * 6 5 4 32 32 H 0.97000 * 119.99424 * 94.99903 * 7 2 1 33 33 H 1.08000 * 119.99492 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.91259 * 179.72472 * 10 9 8 35 35 H 1.08005 * 120.00861 * 179.97438 * 13 11 10 36 36 H 0.96998 * 120.00198 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 8 4.0411 -1.2866 -2.4806 7 7 2.0183 -0.6906 1.1962 8 6 2.1519 0.0074 2.4016 9 6 1.8166 1.3519 2.4671 10 6 1.9541 2.0415 3.6571 11 6 2.4155 1.3908 4.7896 12 9 2.5431 2.0686 5.9514 13 6 2.7466 0.0486 4.7338 14 6 2.6171 -0.6483 3.5415 15 8 2.9419 -1.9656 3.4841 16 6 3.4931 -2.5087 4.5880 17 1 3.5826 -1.9228 5.4909 18 6 3.9450 -3.8190 4.5642 19 7 4.4834 -4.3489 5.6415 20 14 3.7895 -4.8324 3.0027 21 1 5.0107 -4.6581 2.1759 22 1 3.6317 -6.2660 3.3566 23 1 2.6026 -4.3787 2.2342 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.7516 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 3.8533 0.4368 -1.3573 30 1 3.9994 -1.0730 -0.4258 31 1 5.0019 -1.2590 -2.5860 32 1 2.2489 -1.6318 1.1527 33 1 1.4525 1.8611 1.5871 34 1 1.6968 3.0893 3.7052 35 1 3.1065 -0.4562 5.6182 36 1 4.7992 -5.2658 5.6250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893437476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:10 Heat of formation + Delta-G solvation = -122.788460 kcal Electronic energy + Delta-G solvation = -20683.470266 eV Core-core repulsion = 17274.837201 eV Total energy + Delta-G solvation = -3408.633065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.66159 -41.08298 -39.05993 -37.98271 -36.77652 -34.46181 -33.11214 -31.11565 -29.87560 -28.78005 -27.22965 -24.34131 -23.70099 -22.86282 -21.41890 -20.01762 -19.52330 -18.36719 -17.91323 -17.31522 -17.06536 -16.50647 -16.20754 -15.83451 -15.69794 -15.57177 -15.40922 -15.16971 -14.91033 -14.25744 -13.95407 -13.86387 -13.64447 -13.42651 -12.98404 -12.82933 -12.63234 -12.48070 -12.20127 -12.11242 -11.98661 -11.75479 -11.54285 -10.92483 -10.90588 -10.74636 -9.50223 -8.49936 -8.08199 -6.19252 0.44582 0.56677 1.30394 1.34080 1.49179 2.25500 2.52606 2.71787 2.95588 3.07031 3.23696 3.58514 3.93260 4.04079 4.07677 4.23851 4.27417 4.44055 4.50080 4.54936 4.60592 4.67253 4.91303 4.96844 5.01879 5.12088 5.16619 5.23001 5.33736 5.40367 5.45685 5.60847 5.86614 6.05845 6.53742 6.78763 6.83437 6.84173 7.55494 8.62140 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.008724 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.399754 B = 3208.663360 C = 5264.926547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.098 0.902 4 C -0.121 4.121 5 C 0.073 3.927 6 O -0.594 6.594 7 N -0.743 5.743 8 C 0.167 3.833 9 C -0.133 4.133 10 C -0.153 4.153 11 C 0.058 3.942 12 F -0.158 7.158 13 C -0.238 4.238 14 C 0.085 3.915 15 O -0.233 6.233 16 C -0.393 4.393 17 H 0.074 0.926 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.255 1.255 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.395 0.605 32 H 0.395 0.605 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.111 0.889 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 10.771 -15.784 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.115 0.885 4 C -0.159 4.159 5 C -0.005 4.005 6 O -0.402 6.402 7 N -0.374 5.374 8 C 0.064 3.936 9 C -0.156 4.156 10 C -0.173 4.173 11 C 0.037 3.963 12 F -0.137 7.137 13 C -0.259 4.259 14 C 0.033 3.967 15 O -0.141 6.141 16 C -0.470 4.470 17 H 0.091 0.909 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.245 0.755 32 H 0.228 0.772 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.129 0.871 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.155 10.471 -16.053 20.130 hybrid contribution 1.136 -1.041 1.019 1.847 sum -5.019 9.431 -15.033 18.442 Atomic orbital electron populations 1.22261 0.94658 1.02280 1.03129 1.21006 0.94401 0.97141 0.82518 0.88466 1.21765 0.94187 1.01726 0.98240 1.22208 0.95241 0.96317 0.86708 1.86380 1.29002 1.79225 1.45600 1.44761 1.73930 1.12253 1.06500 1.17297 0.99804 0.92045 0.84407 1.20491 1.05532 0.90581 0.99009 1.20881 1.04222 1.01486 0.90685 1.17406 1.06550 0.89537 0.82765 1.91385 1.94498 1.79870 1.47941 1.20912 1.11008 0.94802 0.99166 1.18765 1.00553 0.84273 0.93121 1.83426 1.72902 1.19469 1.38289 1.20605 1.38732 0.97966 0.89664 0.90865 1.25277 0.95027 0.97056 1.01576 1.69751 1.40630 1.16286 1.30050 0.85192 0.79810 0.77247 0.78309 1.19130 1.19827 1.17855 0.93417 0.92323 0.89307 0.92066 0.87965 0.92011 0.95039 0.75522 0.77159 0.81262 0.82276 0.87141 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.42 71.98 0.68 -2.21 16 2 C 0.15 3.05 2.27 44.99 0.10 3.15 16 3 H 0.10 1.59 6.50 -2.39 -0.02 1.57 16 4 C -0.12 -2.33 5.12 30.59 0.16 -2.17 16 5 C 0.07 1.52 6.93 71.98 0.50 2.02 16 6 O -0.59 -12.67 13.66 -148.98 -2.03 -14.70 16 7 N -0.74 -21.84 4.70 -318.40 -1.50 -23.34 16 8 C 0.17 5.78 6.66 38.27 0.25 6.03 16 9 C -0.13 -3.66 8.84 22.38 0.20 -3.47 16 10 C -0.15 -4.56 10.02 22.33 0.22 -4.33 16 11 C 0.06 2.26 7.29 22.37 0.16 2.42 16 12 F -0.16 -6.13 17.26 44.97 0.78 -5.35 16 13 C -0.24 -10.89 9.14 22.41 0.20 -10.69 16 14 C 0.08 3.80 6.66 22.69 0.15 3.95 16 15 O -0.23 -11.99 7.83 -23.03 -0.18 -12.17 16 16 C -0.39 -22.93 9.95 67.91 0.68 -22.25 16 17 H 0.07 4.60 5.44 -2.91 -0.02 4.59 16 18 C 0.01 0.49 5.49 84.82 0.47 0.96 16 19 N -0.93 -55.58 13.96 21.61 0.30 -55.28 16 20 Si 0.97 44.37 28.62 68.60 1.96 46.33 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 1.11 7.68 -2.39 -0.02 1.09 16 26 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.80 7.75 -2.38 -0.02 0.78 16 31 H 0.40 5.21 9.12 -74.06 -0.68 4.54 16 32 H 0.39 13.20 7.97 -92.71 -0.74 12.46 16 33 H 0.17 3.21 6.09 -2.91 -0.02 3.19 16 34 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.11 5.72 5.64 -2.91 -0.02 5.70 16 36 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -68.34 308.42 2.82 -65.53 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.29 Total: 25.57 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.77 Total: -26.59 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.19 Total: -78.62 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -2.22 Total: -26.87 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.78 Total: -5.35 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.96 Total: 46.33 kcal Total: -68.34 2.82 -65.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893437476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.262 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds