Wall clock time and date at job start Mon Mar 30 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47426 * 120.00637 * 2 1 3 5 5 C 1.52995 * 109.47411 * 184.99760 * 4 2 1 6 6 O 1.42898 * 109.47199 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46848 * 240.00215 * 2 1 3 8 8 C 1.39933 * 119.99619 * 85.27794 * 7 2 1 9 9 C 1.38708 * 120.07951 * 359.72451 * 8 7 2 10 10 C 1.38220 * 120.01596 * 179.97438 * 9 8 7 11 11 C 1.38533 * 120.17471 * 359.97438 * 10 9 8 12 12 F 1.35097 * 119.92070 * 179.97438 * 11 10 9 13 13 C 1.38348 * 120.15908 * 0.02562 * 11 10 9 14 14 C 1.38727 * 119.98195 * 359.70023 * 13 11 10 15 15 O 1.35795 * 120.08789 * 180.29543 * 14 13 11 16 16 C 1.34805 * 117.00333 * 354.40234 * 15 14 13 17 17 H 1.07994 * 119.99467 * 5.06186 * 16 15 14 18 18 C 1.38625 * 119.99939 * 185.05943 * 16 15 14 19 19 N 1.31578 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47150 * 60.00293 * 20 18 16 22 22 H 1.48497 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47304 * 300.00194 * 20 18 16 24 24 H 1.09002 * 109.47123 * 299.99475 * 1 2 3 25 25 H 1.09000 * 109.47418 * 59.99450 * 1 2 3 26 26 H 1.08993 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46750 * 304.99934 * 4 2 1 28 28 H 1.09001 * 109.46972 * 64.99215 * 4 2 1 29 29 H 1.08994 * 109.47350 * 300.00058 * 5 4 2 30 30 H 1.09005 * 109.46794 * 59.99638 * 5 4 2 31 31 H 0.96700 * 114.00013 * 180.02562 * 6 5 4 32 32 H 0.97001 * 120.00265 * 264.99774 * 7 2 1 33 33 H 1.07998 * 119.99935 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.91195 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.00887 * 179.97438 * 13 11 10 36 36 H 0.96995 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3136 6 8 4.0411 -1.2867 2.4805 7 7 2.0183 -0.6906 -1.1963 8 6 2.1574 0.0090 -2.4001 9 6 1.8280 1.3549 -2.4641 10 6 1.9664 2.0448 -3.6538 11 6 2.4343 1.3958 -4.7847 12 9 2.5671 2.0749 -5.9450 13 6 2.7650 0.0535 -4.7291 14 6 2.6340 -0.6439 -3.5370 15 8 2.9636 -1.9599 -3.4785 16 6 3.3008 -2.5586 -4.6382 17 1 3.3799 -1.9755 -5.5438 18 6 3.5462 -3.9226 -4.6684 19 7 3.4494 -4.6331 -3.5651 20 14 4.0142 -4.7521 -6.2753 21 1 5.2681 -4.1504 -6.7961 22 1 4.2212 -6.2037 -6.0411 23 1 2.9248 -4.5614 -7.2665 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6054 -0.2619 2.1370 28 1 1.7516 -1.7716 1.2054 29 1 3.9994 -1.0729 0.4258 30 1 3.8532 0.4368 1.3572 31 1 5.0019 -1.2585 2.5863 32 1 2.2490 -1.6318 -1.1528 33 1 1.4641 1.8642 -1.5840 34 1 1.7099 3.0928 -3.7017 35 1 3.1291 -0.4501 -5.6123 36 1 3.6207 -5.5876 -3.5863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893437478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:12 Heat of formation + Delta-G solvation = -103.745618 kcal Electronic energy + Delta-G solvation = -20582.209344 eV Core-core repulsion = 17174.402039 eV Total energy + Delta-G solvation = -3407.807305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.06305 -39.34332 -37.65008 -36.52082 -35.44197 -32.35843 -31.70340 -29.33112 -28.81210 -27.14257 -25.40463 -23.18395 -22.29956 -21.26090 -20.16785 -18.19375 -17.72066 -17.23362 -16.42531 -15.76514 -15.18208 -14.94819 -14.85714 -14.44193 -14.32523 -14.17978 -13.72210 -13.55210 -13.30728 -12.69971 -12.65577 -12.17327 -12.15131 -11.84925 -11.68660 -11.36587 -11.22237 -11.00926 -10.91999 -10.73810 -10.56082 -10.36811 -9.88646 -9.60028 -9.28015 -8.86847 -7.75560 -6.50306 -6.45732 -4.05159 2.10235 2.22342 3.12050 3.13126 3.15467 3.90201 3.99147 4.18534 4.44918 4.93201 5.04338 5.07806 5.10298 5.27222 5.29097 5.44624 5.58841 5.60556 5.66415 5.78179 5.85089 5.96553 6.05901 6.10990 6.18141 6.38124 6.48710 6.57239 6.79891 7.01178 7.08830 7.23703 7.60692 7.64797 7.90956 8.03358 8.40034 8.96635 9.62367 10.67879 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.007019 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.297510 B = 3988.158613 C = 5735.649432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.157 3.843 3 H 0.075 0.925 4 C -0.125 4.125 5 C 0.075 3.925 6 O -0.579 6.579 7 N -0.741 5.741 8 C 0.155 3.845 9 C -0.148 4.148 10 C -0.195 4.195 11 C 0.085 3.915 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.121 3.879 15 O -0.176 6.176 16 C -0.388 4.388 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.378 0.622 32 H 0.408 0.592 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 8.163 6.840 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.163 4.163 5 C -0.003 4.003 6 O -0.384 6.384 7 N -0.375 5.375 8 C 0.054 3.946 9 C -0.172 4.172 10 C -0.216 4.216 11 C 0.064 3.936 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.065 3.935 15 O -0.080 6.080 16 C -0.464 4.464 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.498 5.498 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.225 0.775 32 H 0.245 0.755 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.414 7.761 7.264 10.901 hybrid contribution 0.925 -0.478 -1.258 1.633 sum -1.488 7.283 6.006 9.557 Atomic orbital electron populations 1.22286 0.96070 1.02544 1.01755 1.20675 0.93491 0.96470 0.84303 0.90743 1.21772 0.94376 1.02451 0.97671 1.22204 0.95025 0.95422 0.87655 1.86424 1.27110 1.79063 1.45829 1.44500 1.74373 1.12675 1.05963 1.17092 1.00874 0.91291 0.85370 1.19963 1.07733 0.91817 0.97650 1.20301 1.09276 0.99758 0.92237 1.17235 1.04638 0.90199 0.81489 1.91377 1.94321 1.80178 1.47819 1.20794 1.12206 0.93290 0.99949 1.18605 0.96837 0.86450 0.91587 1.83889 1.74148 1.16145 1.33801 1.21238 1.47640 0.91494 0.86012 0.89176 1.25233 0.96895 0.95186 0.99037 1.70007 1.45409 1.07591 1.26799 0.85797 0.79329 0.78284 0.80170 1.19500 1.20296 1.19487 0.92411 0.91917 0.92247 0.90386 0.90596 0.92533 0.93950 0.77538 0.75515 0.86068 0.86597 0.84505 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.44 37.16 0.35 -1.70 16 2 C 0.16 2.09 2.27 -67.93 -0.15 1.93 16 3 H 0.07 0.93 6.48 -51.93 -0.34 0.59 16 4 C -0.12 -1.57 5.12 -26.73 -0.14 -1.71 16 5 C 0.07 0.97 6.93 37.16 0.26 1.23 16 6 O -0.58 -7.52 13.66 -35.23 -0.48 -8.00 16 7 N -0.74 -12.87 4.70 -51.99 -0.24 -13.11 16 8 C 0.15 3.04 6.66 -83.52 -0.56 2.48 16 9 C -0.15 -2.54 8.87 -39.41 -0.35 -2.89 16 10 C -0.20 -3.48 10.02 -39.48 -0.40 -3.87 16 11 C 0.09 1.72 7.29 -39.43 -0.29 1.43 16 12 F -0.16 -3.11 17.26 2.25 0.04 -3.07 16 13 C -0.24 -5.36 9.14 -39.36 -0.36 -5.72 16 14 C 0.12 2.79 6.67 -38.93 -0.26 2.53 16 15 O -0.18 -4.69 9.00 -0.02 0.00 -4.69 16 16 C -0.39 -10.51 9.49 30.88 0.29 -10.22 16 17 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 20 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.38 3.27 9.12 45.56 0.42 3.69 16 32 H 0.41 7.95 7.97 -40.82 -0.33 7.62 16 33 H 0.12 1.73 6.12 -52.49 -0.32 1.41 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -29.74 309.66 -5.59 -35.33 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -3.61 Total: 12.66 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.69 Total: -15.52 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.51 Total: -36.66 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.48 Total: -12.68 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.74 -5.59 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893437478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.412 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds