Wall clock time and date at job start Mon Mar 30 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47426 * 120.00637 * 2 1 3 5 5 C 1.52995 * 109.47411 * 184.99760 * 4 2 1 6 6 O 1.42898 * 109.47199 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46848 * 240.00215 * 2 1 3 8 8 C 1.39933 * 119.99619 * 85.27794 * 7 2 1 9 9 C 1.38708 * 120.07951 * 359.72451 * 8 7 2 10 10 C 1.38220 * 120.01596 * 179.97438 * 9 8 7 11 11 C 1.38533 * 120.17471 * 359.97438 * 10 9 8 12 12 F 1.35097 * 119.92070 * 179.97438 * 11 10 9 13 13 C 1.38348 * 120.15908 * 0.02562 * 11 10 9 14 14 C 1.38727 * 119.98195 * 359.70023 * 13 11 10 15 15 O 1.35795 * 120.08789 * 180.29543 * 14 13 11 16 16 C 1.34805 * 117.00333 * 354.40234 * 15 14 13 17 17 H 1.07994 * 119.99467 * 5.06186 * 16 15 14 18 18 C 1.38625 * 119.99939 * 185.05943 * 16 15 14 19 19 N 1.31578 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99706 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47150 * 60.00293 * 20 18 16 22 22 H 1.48497 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47304 * 300.00194 * 20 18 16 24 24 H 1.09002 * 109.47123 * 299.99475 * 1 2 3 25 25 H 1.09000 * 109.47418 * 59.99450 * 1 2 3 26 26 H 1.08993 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46750 * 304.99934 * 4 2 1 28 28 H 1.09001 * 109.46972 * 64.99215 * 4 2 1 29 29 H 1.08994 * 109.47350 * 300.00058 * 5 4 2 30 30 H 1.09005 * 109.46794 * 59.99638 * 5 4 2 31 31 H 0.96700 * 114.00013 * 180.02562 * 6 5 4 32 32 H 0.97001 * 120.00265 * 264.99774 * 7 2 1 33 33 H 1.07998 * 119.99935 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.91195 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.00887 * 179.97438 * 13 11 10 36 36 H 0.96995 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3136 6 8 4.0411 -1.2867 2.4805 7 7 2.0183 -0.6906 -1.1963 8 6 2.1574 0.0090 -2.4001 9 6 1.8280 1.3549 -2.4641 10 6 1.9664 2.0448 -3.6538 11 6 2.4343 1.3958 -4.7847 12 9 2.5671 2.0749 -5.9450 13 6 2.7650 0.0535 -4.7291 14 6 2.6340 -0.6439 -3.5370 15 8 2.9636 -1.9599 -3.4785 16 6 3.3008 -2.5586 -4.6382 17 1 3.3799 -1.9755 -5.5438 18 6 3.5462 -3.9226 -4.6684 19 7 3.4494 -4.6331 -3.5651 20 14 4.0142 -4.7521 -6.2753 21 1 5.2681 -4.1504 -6.7961 22 1 4.2212 -6.2037 -6.0411 23 1 2.9248 -4.5614 -7.2665 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6054 -0.2619 2.1370 28 1 1.7516 -1.7716 1.2054 29 1 3.9994 -1.0729 0.4258 30 1 3.8532 0.4368 1.3572 31 1 5.0019 -1.2585 2.5863 32 1 2.2490 -1.6318 -1.1528 33 1 1.4641 1.8642 -1.5840 34 1 1.7099 3.0928 -3.7017 35 1 3.1291 -0.4501 -5.6123 36 1 3.6207 -5.5876 -3.5863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893437478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:12 Heat of formation + Delta-G solvation = -124.892237 kcal Electronic energy + Delta-G solvation = -20583.126330 eV Core-core repulsion = 17174.402039 eV Total energy + Delta-G solvation = -3408.724292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.62801 -40.94693 -38.96974 -37.91336 -36.73663 -34.27939 -33.05355 -30.93683 -29.87744 -28.64479 -27.30154 -24.32974 -23.77051 -22.78962 -21.41378 -19.98746 -19.34585 -18.34460 -17.84724 -17.22631 -16.94986 -16.44949 -16.19975 -15.93994 -15.61910 -15.49249 -15.35745 -15.10899 -14.90625 -13.99780 -13.86331 -13.76893 -13.58906 -13.31782 -12.92378 -12.83598 -12.56168 -12.44694 -12.23709 -12.09631 -11.98723 -11.72910 -11.48340 -10.91169 -10.79109 -10.69866 -9.41474 -8.46591 -8.00304 -6.08866 0.50369 0.63771 1.34502 1.43265 1.48635 2.16028 2.60846 2.78656 3.11421 3.23624 3.35660 3.66649 3.96339 4.04592 4.08900 4.26579 4.27968 4.46162 4.52388 4.56532 4.64011 4.72078 4.91099 5.00009 5.03629 5.08210 5.12535 5.20131 5.35616 5.40543 5.46230 5.50356 5.97102 6.06568 6.60587 6.82981 6.84320 6.99223 7.76525 8.74905 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.007019 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.297510 B = 3988.158613 C = 5735.649432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.096 0.904 4 C -0.120 4.120 5 C 0.076 3.924 6 O -0.593 6.593 7 N -0.742 5.742 8 C 0.158 3.842 9 C -0.136 4.136 10 C -0.163 4.163 11 C 0.062 3.938 12 F -0.157 7.157 13 C -0.247 4.247 14 C 0.078 3.922 15 O -0.215 6.215 16 C -0.409 4.409 17 H 0.092 0.908 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.009 2.991 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.262 1.262 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.395 0.605 32 H 0.394 0.606 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 10.791 7.742 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.114 0.886 4 C -0.158 4.158 5 C -0.002 4.002 6 O -0.401 6.401 7 N -0.373 5.373 8 C 0.055 3.945 9 C -0.160 4.160 10 C -0.183 4.183 11 C 0.041 3.959 12 F -0.136 7.136 13 C -0.268 4.268 14 C 0.025 3.975 15 O -0.122 6.122 16 C -0.486 4.486 17 H 0.110 0.890 18 C -0.213 4.213 19 N -0.550 5.550 20 Si 0.829 3.171 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.187 1.187 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.245 0.755 32 H 0.228 0.772 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.138 0.862 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.233 10.454 8.193 13.669 hybrid contribution 1.107 -1.014 -1.405 2.056 sum -2.126 9.440 6.788 11.820 Atomic orbital electron populations 1.22251 0.94813 1.02081 1.03059 1.20974 0.94325 0.96974 0.82698 0.88619 1.21749 0.94242 1.01520 0.98274 1.22165 0.95202 0.96185 0.86599 1.86381 1.28965 1.79273 1.45514 1.44771 1.73753 1.12150 1.06603 1.17405 0.99627 0.92274 0.85159 1.20427 1.06078 0.90481 0.98995 1.20815 1.05215 1.01377 0.90894 1.17345 1.06325 0.89595 0.82649 1.91377 1.94454 1.79832 1.47892 1.20852 1.12127 0.94570 0.99295 1.19100 0.99107 0.85804 0.93443 1.83859 1.76733 1.17936 1.33692 1.21611 1.48106 0.92245 0.86621 0.89044 1.26340 0.96777 0.95501 1.02702 1.70135 1.47900 1.07829 1.29113 0.84781 0.79310 0.77292 0.75726 1.18566 1.19459 1.18684 0.89163 0.92439 0.93720 0.87891 0.92497 0.95442 0.91900 0.75548 0.77214 0.81826 0.82571 0.86232 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.44 71.98 0.68 -2.82 16 2 C 0.15 3.71 2.27 44.99 0.10 3.81 16 3 H 0.10 1.93 6.48 -2.39 -0.02 1.91 16 4 C -0.12 -2.80 5.12 30.59 0.16 -2.64 16 5 C 0.08 1.89 6.93 71.98 0.50 2.39 16 6 O -0.59 -14.69 13.66 -148.98 -2.03 -16.73 16 7 N -0.74 -25.48 4.70 -318.40 -1.50 -26.98 16 8 C 0.16 6.07 6.66 38.26 0.25 6.33 16 9 C -0.14 -4.17 8.87 22.38 0.20 -3.98 16 10 C -0.16 -5.16 10.02 22.34 0.22 -4.93 16 11 C 0.06 2.41 7.29 22.37 0.16 2.57 16 12 F -0.16 -5.93 17.26 44.97 0.78 -5.16 16 13 C -0.25 -11.26 9.14 22.41 0.20 -11.06 16 14 C 0.08 3.73 6.67 22.69 0.15 3.88 16 15 O -0.22 -12.19 9.00 -22.99 -0.21 -12.40 16 16 C -0.41 -23.46 9.49 67.91 0.64 -22.81 16 17 H 0.09 4.98 5.21 -2.91 -0.02 4.96 16 18 C -0.01 -0.83 5.49 84.82 0.47 -0.36 16 19 N -0.91 -54.02 13.67 21.61 0.30 -53.72 16 20 Si 1.01 42.97 29.55 68.60 2.03 44.99 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.30 7.73 -2.39 -0.02 1.28 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.83 7.75 -2.39 -0.02 0.81 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.40 6.41 9.12 -74.06 -0.68 5.73 16 32 H 0.39 16.02 7.97 -92.71 -0.74 15.28 16 33 H 0.16 3.66 6.12 -2.91 -0.02 3.64 16 34 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.12 5.72 5.64 -2.91 -0.02 5.71 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -68.25 309.66 2.82 -65.43 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.29 Total: 34.18 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 3.74 Total: -29.62 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.20 Total: -80.70 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -2.24 Total: -29.12 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.16 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.25 2.82 -65.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893437478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.464 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds