Wall clock time and date at job start Mon Mar 30 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46966 * 240.00317 * 3 2 1 5 5 H 1.48501 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47191 * 120.00455 * 3 2 1 7 7 C 1.37874 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00298 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47328 * 180.02562 * 11 10 9 13 13 C 1.38689 * 120.72275 * 90.00134 * 12 11 10 14 14 N 1.32177 * 119.20297 * 180.02562 * 13 12 11 15 15 C 1.32603 * 120.73950 * 0.02562 * 14 13 12 16 16 C 1.48313 * 119.21784 * 179.97438 * 15 14 13 17 17 C 1.39376 * 120.12757 * 359.97438 * 16 15 14 18 18 C 1.38005 * 119.87410 * 180.02562 * 17 16 15 19 19 C 1.38335 * 120.12299 * 0.02562 * 18 17 16 20 20 C 1.38326 * 120.25121 * 359.97438 * 19 18 17 21 21 C 1.38009 * 120.12849 * 0.02562 * 20 19 18 22 22 N 1.32594 * 121.55856 * 0.27317 * 15 14 13 23 23 C 1.32192 * 120.73857 * 359.44383 * 22 15 14 24 24 H 0.97004 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47036 * 60.00266 * 9 7 2 26 26 H 1.08996 * 109.47326 * 300.00084 * 9 7 2 27 27 H 1.00897 * 111.00226 * 303.96069 * 10 9 7 28 28 H 1.09003 * 109.46439 * 59.99980 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00771 * 11 10 9 30 30 H 1.08003 * 120.39425 * 359.97438 * 13 12 11 31 31 H 1.07993 * 120.06240 * 0.03571 * 17 16 15 32 32 H 1.07999 * 119.93733 * 180.27278 * 18 17 16 33 33 H 1.08001 * 119.86981 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.93385 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.06259 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.39836 * 180.29894 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5151 -6.0259 -0.0019 13 6 2.9906 -6.5519 1.1901 14 7 3.8761 -7.5325 1.1544 15 6 4.3097 -8.0125 -0.0032 16 6 5.3041 -9.1129 -0.0038 17 6 5.7739 -9.6318 1.2014 18 6 6.6996 -10.6554 1.1948 19 6 7.1615 -11.1659 -0.0051 20 6 6.6987 -10.6547 -1.2042 21 6 5.7730 -9.6311 -1.2097 22 7 3.8796 -7.5280 -1.1601 23 6 2.9900 -6.5508 -1.1945 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8401 -3.5482 -0.7835 28 1 0.8797 -4.9812 -0.8905 29 1 0.8815 -4.9816 0.8894 30 1 2.6421 -6.1642 2.1360 31 1 5.4142 -9.2338 2.1387 32 1 7.0611 -11.0612 2.1280 33 1 7.8862 -11.9666 -0.0056 34 1 7.0631 -11.0568 -2.1380 35 1 5.4126 -9.2325 -2.1465 36 1 2.6399 -6.1636 -2.1400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916832099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:36 Heat of formation + Delta-G solvation = 69.423695 kcal Electronic energy + Delta-G solvation = -18421.075675 eV Core-core repulsion = 15483.839531 eV Total energy + Delta-G solvation = -2937.236145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05440 -38.99822 -35.87630 -33.71900 -33.34395 -32.18597 -31.06597 -30.31495 -27.19177 -25.12328 -24.72263 -22.88431 -22.34589 -21.59416 -21.22422 -17.94518 -17.54161 -16.62620 -16.22921 -15.18571 -15.02616 -14.83986 -14.71719 -14.41184 -14.00215 -13.64421 -13.54104 -13.39236 -13.29839 -12.78466 -12.44728 -11.67700 -11.52962 -11.42142 -11.23270 -10.99264 -10.77633 -10.76622 -10.60948 -10.12752 -9.82000 -9.29503 -9.16667 -9.10484 -8.56362 -8.49477 -7.47395 -6.09731 -4.12332 0.37990 1.16152 1.25614 1.58345 3.30300 3.34308 3.37467 3.48836 3.72027 4.04202 4.14166 4.38428 4.71644 4.78177 4.82146 4.89469 4.93603 4.99549 5.21230 5.26370 5.33911 5.39069 5.44151 5.73212 5.76483 5.89598 5.99395 6.13109 6.20325 6.31290 6.43123 6.47852 6.75604 7.02135 7.09571 7.29188 7.68235 8.02177 8.07949 8.22225 8.46353 8.95924 9.53000 11.01173 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.002886 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.785732 B = 9698.495842 C = 9830.630094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.102 3.898 12 C -0.171 4.171 13 C 0.168 3.832 14 N -0.512 5.512 15 C 0.340 3.660 16 C -0.040 4.040 17 C -0.074 4.074 18 C -0.132 4.132 19 C -0.106 4.106 20 C -0.132 4.132 21 C -0.074 4.074 22 N -0.512 5.512 23 C 0.152 3.848 24 H 0.263 0.737 25 H -0.011 1.011 26 H 0.031 0.969 27 H 0.330 0.670 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.172 0.828 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 -21.001 -0.732 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.029 4.029 12 C -0.175 4.175 13 C 0.002 3.998 14 N -0.225 5.225 15 C 0.075 3.925 16 C -0.042 4.042 17 C -0.093 4.093 18 C -0.150 4.150 19 C -0.125 4.125 20 C -0.150 4.150 21 C -0.094 4.094 22 N -0.225 5.225 23 C -0.015 4.015 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.049 0.951 27 H 0.147 0.853 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.189 0.811 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.104 -21.549 -0.042 23.800 hybrid contribution -0.651 1.754 -0.914 2.082 sum 9.453 -19.794 -0.955 21.957 Atomic orbital electron populations 1.69940 1.06084 1.27059 1.50564 1.24979 0.94893 0.99403 0.95180 0.86525 0.79426 0.82532 0.78721 1.20224 1.21276 1.20105 1.21113 0.93503 0.90134 1.50859 0.91997 1.19593 0.90482 0.87048 0.96049 1.60775 1.21215 1.00430 1.49112 1.20750 0.92626 0.87955 1.01530 1.21892 1.00919 0.99514 0.95210 1.23149 0.89067 0.88807 0.98815 1.68313 1.12303 1.12257 1.29659 1.21203 0.93465 0.93632 0.84156 1.18103 0.96776 0.95067 0.94221 1.21341 0.95122 0.94893 0.97974 1.21117 0.98174 0.97419 0.98289 1.21308 0.99158 0.99344 0.92640 1.21112 0.98184 0.97440 0.98291 1.21334 0.95199 0.94919 0.97933 1.68275 1.12266 1.12148 1.29819 1.23134 0.89924 0.89871 0.98578 0.92746 0.99313 0.95138 0.85339 0.94574 0.90114 0.81052 0.84552 0.85625 0.85954 0.85649 0.84613 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.36 9.32 -34.44 -0.32 -14.68 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 4.88 5.44 -4.97 -0.03 4.86 16 10 N -0.68 -13.86 6.48 -116.34 -0.75 -14.62 16 11 C 0.10 1.64 5.86 -4.98 -0.03 1.61 16 12 C -0.17 -2.47 5.43 -104.29 -0.57 -3.04 16 13 C 0.17 2.41 11.00 -17.24 -0.19 2.22 16 14 N -0.51 -7.66 9.45 -11.14 -0.11 -7.76 16 15 C 0.34 5.06 7.55 -156.94 -1.19 3.87 16 16 C -0.04 -0.52 5.88 -104.90 -0.62 -1.13 16 17 C -0.07 -0.84 9.56 -39.24 -0.38 -1.21 16 18 C -0.13 -1.20 10.03 -39.63 -0.40 -1.60 16 19 C -0.11 -0.89 10.04 -39.51 -0.40 -1.28 16 20 C -0.13 -1.20 10.03 -39.63 -0.40 -1.60 16 21 C -0.07 -0.84 9.56 -39.24 -0.38 -1.21 16 22 N -0.51 -7.54 9.45 -11.14 -0.11 -7.64 16 23 C 0.15 2.10 11.00 -17.23 -0.19 1.91 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.33 6.49 8.72 -39.29 -0.34 6.15 16 28 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.08 1.27 8.10 -51.93 -0.42 0.84 16 30 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.14 1.53 7.51 -52.49 -0.39 1.13 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.14 1.51 7.51 -52.49 -0.39 1.11 16 36 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -30.95 318.34 -10.09 -41.04 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.48 Total: 3.11 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -5.16 Total: -9.79 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.23 Total: -55.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.95 -10.09 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916832099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.466 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds