Wall clock time and date at job start Mon Mar 30 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46966 * 240.00317 * 3 2 1 5 5 H 1.48501 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47191 * 120.00455 * 3 2 1 7 7 C 1.37874 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00298 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47328 * 180.02562 * 11 10 9 13 13 C 1.38689 * 120.72275 * 90.00134 * 12 11 10 14 14 N 1.32177 * 119.20297 * 180.02562 * 13 12 11 15 15 C 1.32603 * 120.73950 * 0.02562 * 14 13 12 16 16 C 1.48313 * 119.21784 * 179.97438 * 15 14 13 17 17 C 1.39376 * 120.12757 * 359.97438 * 16 15 14 18 18 C 1.38005 * 119.87410 * 180.02562 * 17 16 15 19 19 C 1.38335 * 120.12299 * 0.02562 * 18 17 16 20 20 C 1.38326 * 120.25121 * 359.97438 * 19 18 17 21 21 C 1.38009 * 120.12849 * 0.02562 * 20 19 18 22 22 N 1.32594 * 121.55856 * 0.27317 * 15 14 13 23 23 C 1.32192 * 120.73857 * 359.44383 * 22 15 14 24 24 H 0.97004 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47036 * 60.00266 * 9 7 2 26 26 H 1.08996 * 109.47326 * 300.00084 * 9 7 2 27 27 H 1.00897 * 111.00226 * 303.96069 * 10 9 7 28 28 H 1.09003 * 109.46439 * 59.99980 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00771 * 11 10 9 30 30 H 1.08003 * 120.39425 * 359.97438 * 13 12 11 31 31 H 1.07993 * 120.06240 * 0.03571 * 17 16 15 32 32 H 1.07999 * 119.93733 * 180.27278 * 18 17 16 33 33 H 1.08001 * 119.86981 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.93385 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.06259 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.39836 * 180.29894 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5055 -4.9070 -0.0012 12 6 2.5151 -6.0259 -0.0019 13 6 2.9906 -6.5519 1.1901 14 7 3.8761 -7.5325 1.1544 15 6 4.3097 -8.0125 -0.0032 16 6 5.3041 -9.1129 -0.0038 17 6 5.7739 -9.6318 1.2014 18 6 6.6996 -10.6554 1.1948 19 6 7.1615 -11.1659 -0.0051 20 6 6.6987 -10.6547 -1.2042 21 6 5.7730 -9.6311 -1.2097 22 7 3.8796 -7.5280 -1.1601 23 6 2.9900 -6.5508 -1.1945 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8401 -3.5482 -0.7835 28 1 0.8797 -4.9812 -0.8905 29 1 0.8815 -4.9816 0.8894 30 1 2.6421 -6.1642 2.1360 31 1 5.4142 -9.2338 2.1387 32 1 7.0611 -11.0612 2.1280 33 1 7.8862 -11.9666 -0.0056 34 1 7.0631 -11.0568 -2.1380 35 1 5.4126 -9.2325 -2.1465 36 1 2.6399 -6.1636 -2.1400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916832099.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:36 Heat of formation + Delta-G solvation = 50.642218 kcal Electronic energy + Delta-G solvation = -18421.890101 eV Core-core repulsion = 15483.839531 eV Total energy + Delta-G solvation = -2938.050571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.14258 -39.79374 -37.43193 -35.02110 -34.82718 -33.67793 -31.82379 -31.47448 -28.86864 -26.56331 -25.79286 -24.20617 -23.29504 -23.12785 -22.31435 -18.86254 -18.70066 -18.58421 -17.04998 -16.85731 -16.33664 -16.09131 -15.79151 -15.53171 -15.34420 -15.02415 -14.56340 -14.45352 -14.24754 -14.20414 -13.64437 -13.36039 -13.21971 -12.79496 -12.62733 -12.28048 -12.15382 -11.97234 -11.90697 -11.80412 -11.35167 -10.91199 -10.66442 -10.28522 -9.86195 -9.46477 -9.15914 -8.23355 -6.34069 -0.62652 0.05463 0.50027 0.66999 1.41492 1.44070 1.52170 2.39197 2.57077 2.73028 3.06487 3.09577 3.10426 3.56533 3.65587 3.79449 3.95030 4.07955 4.09678 4.17692 4.34239 4.54147 4.58354 4.68104 4.70861 4.94325 4.97281 5.08926 5.17270 5.26002 5.27150 5.55482 5.57144 5.58981 5.61685 5.90112 5.99897 6.05675 6.38098 6.64620 6.85411 6.97579 7.36650 8.87568 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.002886 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.785732 B = 9698.495842 C = 9830.630094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.209 3.791 10 N -0.685 5.685 11 C 0.110 3.890 12 C -0.179 4.179 13 C 0.165 3.835 14 N -0.525 5.525 15 C 0.334 3.666 16 C -0.072 4.072 17 C -0.086 4.086 18 C -0.132 4.132 19 C -0.097 4.097 20 C -0.131 4.131 21 C -0.085 4.085 22 N -0.524 5.524 23 C 0.154 3.846 24 H 0.266 0.734 25 H -0.031 1.031 26 H 0.007 0.993 27 H 0.334 0.666 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.186 0.814 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.474 -22.159 -0.963 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.082 3.918 10 N -0.316 5.316 11 C -0.020 4.020 12 C -0.184 4.184 13 C -0.002 4.002 14 N -0.239 5.239 15 C 0.070 3.930 16 C -0.074 4.074 17 C -0.106 4.106 18 C -0.149 4.149 19 C -0.116 4.116 20 C -0.149 4.149 21 C -0.105 4.105 22 N -0.237 5.237 23 C -0.013 4.013 24 H 0.075 0.925 25 H -0.014 1.014 26 H 0.025 0.975 27 H 0.151 0.849 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.203 0.797 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.030 -22.731 -0.274 25.720 hybrid contribution -1.181 1.950 -0.840 2.429 sum 10.850 -20.781 -1.115 23.469 Atomic orbital electron populations 1.70058 1.07633 1.28102 1.51334 1.25881 0.95765 1.03165 0.94609 0.85442 0.78170 0.77963 0.79067 1.19226 1.20735 1.19520 1.21494 0.93719 0.91556 1.50844 0.92055 1.19226 0.90490 0.88238 0.93879 1.60607 1.20575 1.00969 1.49452 1.20680 0.92918 0.86340 1.02100 1.21656 1.01389 0.99599 0.95711 1.23439 0.88696 0.88560 0.99455 1.68386 1.12853 1.12730 1.29890 1.21732 0.93382 0.93799 0.84134 1.18298 0.97798 0.95758 0.95575 1.21426 0.96064 0.95885 0.97205 1.21457 0.97107 0.96386 0.99978 1.21747 0.98693 0.99279 0.91841 1.21458 0.97102 0.96392 0.99969 1.21425 0.96079 0.95857 0.97162 1.68366 1.12812 1.12638 1.29865 1.23502 0.89209 0.89302 0.99264 0.92550 1.01353 0.97486 0.84878 0.93620 0.89878 0.79721 0.85219 0.83049 0.82552 0.83010 0.85131 0.79431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -30.09 9.32 25.60 0.24 -29.85 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.21 10.73 5.44 85.56 0.47 11.19 16 10 N -0.69 -27.92 6.48 -521.99 -3.38 -31.30 16 11 C 0.11 3.51 5.86 85.56 0.50 4.01 16 12 C -0.18 -5.15 5.43 -19.65 -0.11 -5.26 16 13 C 0.16 4.72 11.00 84.75 0.93 5.66 16 14 N -0.53 -15.84 9.45 -189.16 -1.79 -17.63 16 15 C 0.33 10.01 7.55 137.53 1.04 11.04 16 16 C -0.07 -1.87 5.88 -20.05 -0.12 -1.99 16 17 C -0.09 -1.90 9.56 22.49 0.22 -1.69 16 18 C -0.13 -2.08 10.03 22.24 0.22 -1.86 16 19 C -0.10 -1.30 10.04 22.31 0.22 -1.08 16 20 C -0.13 -2.06 10.03 22.24 0.22 -1.84 16 21 C -0.09 -1.87 9.56 22.49 0.22 -1.65 16 22 N -0.52 -15.40 9.45 -189.15 -1.79 -17.19 16 23 C 0.15 4.20 11.00 84.75 0.93 5.13 16 24 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 25 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.33 13.13 8.72 -89.70 -0.78 12.35 16 28 H 0.05 1.39 8.10 -2.39 -0.02 1.38 16 29 H 0.08 2.61 8.10 -2.39 -0.02 2.60 16 30 H 0.19 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.13 2.93 7.51 -2.91 -0.02 2.91 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.88 7.51 -2.91 -0.02 2.86 16 36 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.70 318.34 1.11 -65.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.31 Total: 17.06 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.45 Total: -7.47 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.67 Total: -121.00 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.70 1.11 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916832099.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.230 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds