Wall clock time and date at job start Mon Mar 30 2020 01:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00197 * 2 1 4 4 H 1.48494 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46848 * 300.00233 * 3 2 1 6 6 H 1.48499 * 109.47055 * 59.99692 * 3 2 1 7 7 C 1.38812 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 162.48657 * 7 2 1 9 9 N 1.36936 * 119.99976 * 342.48594 * 7 2 1 10 10 C 1.47240 * 120.97526 * 331.85478 * 9 7 2 11 11 C 1.53369 * 109.19960 * 115.68394 * 10 9 7 12 12 C 1.50826 * 108.83910 * 45.44442 * 11 10 9 13 13 N 1.33667 * 127.80007 * 162.13599 * 12 11 10 14 14 C 1.30742 * 109.20216 * 179.82394 * 13 12 11 15 15 N 1.35333 * 108.76477 * 0.02931 * 14 13 12 16 16 H 0.96992 * 126.52159 * 180.08179 * 15 14 13 17 17 C 1.35039 * 124.37487 * 342.08860 * 12 11 10 18 18 C 1.47452 * 120.85947 * 151.83206 * 9 7 2 19 19 H 1.09000 * 109.90753 * 343.44254 * 18 9 7 20 20 C 1.50699 * 109.90294 * 104.50600 * 18 9 7 21 21 C 1.38236 * 119.99894 * 63.91196 * 20 18 9 22 22 C 1.38236 * 120.00015 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99977 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99980 * 359.97438 * 23 22 21 25 25 C 1.38230 * 119.99993 * 243.82330 * 20 18 9 26 26 H 0.97000 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47874 * 355.78375 * 10 9 7 28 28 H 1.08999 * 109.58401 * 235.64288 * 10 9 7 29 29 H 1.09006 * 109.58158 * 285.63887 * 11 10 9 30 30 H 1.09003 * 109.68601 * 165.31664 * 11 10 9 31 31 H 1.07997 * 125.62145 * 180.02562 * 14 13 12 32 32 H 1.07999 * 120.00196 * 0.25692 * 21 20 18 33 33 H 1.08003 * 120.00198 * 179.97438 * 22 21 20 34 34 H 1.08001 * 119.99933 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00294 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.00180 * 0.08775 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0527 -1.2237 -0.2820 9 7 1.3732 -2.3607 0.3558 10 6 0.2341 -2.3432 1.2887 11 6 -1.0260 -2.8189 0.5552 12 6 -0.6868 -4.0499 -0.2475 13 7 -1.5295 -4.9546 -0.7555 14 6 -0.8456 -5.8708 -1.3897 15 7 0.4710 -5.5706 -1.3011 16 1 1.2055 -6.0777 -1.6809 17 6 0.5684 -4.4227 -0.5780 18 6 1.8096 -3.6611 -0.1854 19 1 2.4418 -3.5059 -1.0596 20 6 2.5693 -4.4260 0.8676 21 6 1.9305 -4.8279 2.0257 22 6 2.6272 -5.5301 2.9913 23 6 3.9626 -5.8309 2.7986 24 6 4.6011 -5.4299 1.6400 25 6 3.9044 -4.7274 0.6744 26 1 -0.4851 0.8400 -0.0004 27 1 0.0807 -1.3284 1.6559 28 1 0.4393 -3.0072 2.1284 29 1 -1.3784 -2.0329 -0.1129 30 1 -1.8043 -3.0583 1.2798 31 1 -1.2626 -6.7263 -1.9001 32 1 0.8859 -4.5973 2.1742 33 1 2.1282 -5.8438 3.8964 34 1 4.5071 -6.3791 3.5532 35 1 5.6445 -5.6645 1.4895 36 1 4.4035 -4.4135 -0.2304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931794450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:46 Heat of formation + Delta-G solvation = 114.470921 kcal Electronic energy + Delta-G solvation = -20708.345779 eV Core-core repulsion = 17773.063029 eV Total energy + Delta-G solvation = -2935.282750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56924 -38.85048 -36.19944 -32.84558 -32.29228 -30.73226 -30.30784 -29.34209 -28.08181 -25.11516 -23.30480 -22.13936 -21.57127 -21.31389 -20.43784 -18.41043 -17.45664 -16.37338 -16.06139 -15.21962 -14.97709 -14.41453 -14.31925 -13.94551 -13.62868 -13.27727 -13.02984 -12.82167 -12.37201 -12.13743 -11.90824 -11.50917 -11.13685 -10.92953 -10.84497 -10.76429 -10.58847 -10.14287 -10.05106 -9.68241 -9.26602 -9.10119 -8.58838 -8.51252 -8.28123 -7.39978 -6.77809 -5.85777 -3.31987 1.76843 1.81097 2.70328 3.34329 3.42730 3.44532 3.66394 3.82924 4.17075 4.46751 5.12712 5.22622 5.25429 5.31948 5.36093 5.47607 5.54111 5.62364 5.88906 5.92445 6.04520 6.19852 6.22602 6.39967 6.46164 6.63082 6.70966 6.83323 6.87569 6.91840 7.05350 7.22279 7.31942 7.41694 7.56198 7.68714 7.80535 7.99160 8.34298 8.75687 9.10572 9.70322 10.28349 11.20871 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.008900 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.378270 B = 3145.455483 C = 4378.570710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.010 3.990 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.566 5.566 10 C 0.161 3.839 11 C -0.048 4.048 12 C 0.026 3.974 13 N -0.494 5.494 14 C 0.150 3.850 15 N -0.563 5.563 16 H 0.411 0.589 17 C -0.026 4.026 18 C 0.275 3.725 19 H 0.076 0.924 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.116 4.116 26 H 0.255 0.745 27 H 0.095 0.905 28 H 0.014 0.986 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.197 0.803 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 -11.555 1.376 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.285 5.285 10 C 0.036 3.964 11 C -0.088 4.088 12 C -0.103 4.103 13 N -0.214 5.214 14 C -0.132 4.132 15 N -0.166 5.166 16 H 0.248 0.752 17 C -0.143 4.143 18 C 0.165 3.835 19 H 0.094 0.906 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.032 0.968 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.214 0.786 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.643 -11.289 1.463 11.952 hybrid contribution 1.528 0.441 -0.476 1.660 sum 5.171 -10.848 0.988 12.058 Atomic orbital electron populations 1.69998 1.05182 1.25598 1.52446 1.25056 0.95303 0.98398 1.00220 0.86202 0.79390 0.83696 0.77300 1.20233 1.21706 1.21416 1.19144 0.92676 0.84063 1.42771 0.91402 1.44222 1.35865 0.99733 1.48724 1.21053 0.84917 1.00960 0.89506 1.20548 0.98948 0.91694 0.97578 1.20759 0.88239 0.97939 1.03353 1.69977 1.34234 1.03858 1.13370 1.24782 0.79933 1.02303 1.06162 1.42924 1.09260 1.21563 1.42872 0.75231 1.21854 0.99819 0.90261 1.02392 1.17917 0.88410 0.85026 0.92155 0.90612 1.20726 0.94154 0.95514 0.96931 1.21274 1.00564 0.96519 0.93322 1.21111 0.94683 0.99603 0.99080 1.20986 0.95010 1.01586 0.97662 1.21000 0.99247 0.99686 0.94555 1.21012 0.94042 0.99051 0.99419 0.93441 0.88651 0.96790 0.88536 0.93214 0.78607 0.85669 0.86814 0.86981 0.86829 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 10.12 55.49 0.56 -23.83 16 2 C 0.01 0.27 4.92 -17.43 -0.09 0.18 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.75 9.65 -15.06 -0.15 -6.90 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.57 -13.61 2.63 -166.69 -0.44 -14.05 16 10 C 0.16 3.77 5.09 -3.45 -0.02 3.75 16 11 C -0.05 -1.10 6.35 -27.63 -0.18 -1.27 16 12 C 0.03 0.58 7.01 -82.87 -0.58 0.00 16 13 N -0.49 -10.22 11.25 -10.73 -0.12 -10.34 16 14 C 0.15 2.43 13.05 -89.91 -1.17 1.26 16 15 N -0.56 -8.92 6.15 -10.25 -0.06 -8.99 16 16 H 0.41 4.96 8.96 -40.82 -0.37 4.59 16 17 C -0.03 -0.52 5.85 -81.81 -0.48 -1.00 16 18 C 0.27 5.64 3.07 -69.65 -0.21 5.43 16 19 H 0.08 1.55 7.77 -51.93 -0.40 1.15 16 20 C -0.07 -1.28 5.05 -104.63 -0.53 -1.81 16 21 C -0.10 -1.76 8.24 -39.58 -0.33 -2.08 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 24 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.12 -1.86 9.68 -39.58 -0.38 -2.25 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.10 2.46 5.97 -51.93 -0.31 2.15 16 28 H 0.01 0.31 5.08 -51.93 -0.26 0.05 16 29 H 0.10 2.51 7.11 -51.93 -0.37 2.14 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.20 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.13 2.39 5.63 -52.49 -0.30 2.09 16 33 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.68 7.96 -52.49 -0.42 1.27 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -30.45 294.21 -10.05 -40.50 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.09 Total: 7.73 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -5.30 Total: -11.49 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.06 Total: -57.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.45 -10.05 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931794450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.971 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds