Wall clock time and date at job start Mon Mar 30 2020 01:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00197 * 2 1 4 4 H 1.48494 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46848 * 300.00233 * 3 2 1 6 6 H 1.48499 * 109.47055 * 59.99692 * 3 2 1 7 7 C 1.38812 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 162.48657 * 7 2 1 9 9 N 1.36936 * 119.99976 * 342.48594 * 7 2 1 10 10 C 1.47240 * 120.97526 * 331.85478 * 9 7 2 11 11 C 1.53369 * 109.19960 * 115.68394 * 10 9 7 12 12 C 1.50826 * 108.83910 * 45.44442 * 11 10 9 13 13 N 1.33667 * 127.80007 * 162.13599 * 12 11 10 14 14 C 1.30742 * 109.20216 * 179.82394 * 13 12 11 15 15 N 1.35333 * 108.76477 * 0.02931 * 14 13 12 16 16 H 0.96992 * 126.52159 * 180.08179 * 15 14 13 17 17 C 1.35039 * 124.37487 * 342.08860 * 12 11 10 18 18 C 1.47452 * 120.85947 * 151.83206 * 9 7 2 19 19 H 1.09000 * 109.90753 * 343.44254 * 18 9 7 20 20 C 1.50699 * 109.90294 * 104.50600 * 18 9 7 21 21 C 1.38236 * 119.99894 * 63.91196 * 20 18 9 22 22 C 1.38236 * 120.00015 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99977 * 359.97438 * 22 21 20 24 24 C 1.38233 * 119.99980 * 359.97438 * 23 22 21 25 25 C 1.38230 * 119.99993 * 243.82330 * 20 18 9 26 26 H 0.97000 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47874 * 355.78375 * 10 9 7 28 28 H 1.08999 * 109.58401 * 235.64288 * 10 9 7 29 29 H 1.09006 * 109.58158 * 285.63887 * 11 10 9 30 30 H 1.09003 * 109.68601 * 165.31664 * 11 10 9 31 31 H 1.07997 * 125.62145 * 180.02562 * 14 13 12 32 32 H 1.07999 * 120.00196 * 0.25692 * 21 20 18 33 33 H 1.08003 * 120.00198 * 179.97438 * 22 21 20 34 34 H 1.08001 * 119.99933 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00294 * 179.97438 * 24 23 22 36 36 H 1.07998 * 120.00180 * 0.08775 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0527 -1.2237 -0.2820 9 7 1.3732 -2.3607 0.3558 10 6 0.2341 -2.3432 1.2887 11 6 -1.0260 -2.8189 0.5552 12 6 -0.6868 -4.0499 -0.2475 13 7 -1.5295 -4.9546 -0.7555 14 6 -0.8456 -5.8708 -1.3897 15 7 0.4710 -5.5706 -1.3011 16 1 1.2055 -6.0777 -1.6809 17 6 0.5684 -4.4227 -0.5780 18 6 1.8096 -3.6611 -0.1854 19 1 2.4418 -3.5059 -1.0596 20 6 2.5693 -4.4260 0.8676 21 6 1.9305 -4.8279 2.0257 22 6 2.6272 -5.5301 2.9913 23 6 3.9626 -5.8309 2.7986 24 6 4.6011 -5.4299 1.6400 25 6 3.9044 -4.7274 0.6744 26 1 -0.4851 0.8400 -0.0004 27 1 0.0807 -1.3284 1.6559 28 1 0.4393 -3.0072 2.1284 29 1 -1.3784 -2.0329 -0.1129 30 1 -1.8043 -3.0583 1.2798 31 1 -1.2626 -6.7263 -1.9001 32 1 0.8859 -4.5973 2.1742 33 1 2.1282 -5.8438 3.8964 34 1 4.5071 -6.3791 3.5532 35 1 5.6445 -5.6645 1.4895 36 1 4.4035 -4.4135 -0.2304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931794450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:46 Heat of formation + Delta-G solvation = 97.643554 kcal Electronic energy + Delta-G solvation = -20709.075469 eV Core-core repulsion = 17773.063029 eV Total energy + Delta-G solvation = -2936.012440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.03895 -40.13142 -37.87122 -34.36981 -34.11572 -32.12585 -31.59664 -31.11510 -29.59103 -26.87427 -24.92587 -23.60824 -23.10908 -22.66858 -21.83950 -20.06979 -18.94223 -18.05491 -17.41133 -17.01385 -16.30078 -15.95088 -15.73603 -15.47034 -15.17875 -15.01543 -14.26132 -14.21627 -13.96248 -13.65437 -13.34794 -13.30973 -12.87190 -12.70314 -12.64062 -12.14941 -12.04614 -11.94934 -11.80216 -11.43128 -10.83439 -10.63266 -10.53096 -9.71498 -9.57256 -8.94408 -8.68600 -7.85085 -5.34116 0.54882 0.60377 1.26711 1.47728 1.50469 1.59970 2.29641 2.31284 2.54113 2.96569 3.30695 3.65945 3.82665 4.01247 4.03819 4.20955 4.30481 4.34163 4.48175 4.57713 4.57832 4.77888 4.82089 4.90160 4.90855 5.19546 5.22993 5.26264 5.43508 5.48152 5.58752 5.67657 5.70902 5.79068 5.90797 5.97783 6.22685 6.38153 6.74908 7.12280 7.29078 7.77790 8.34416 9.19231 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.008900 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.378270 B = 3145.455483 C = 4378.570710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.039 4.039 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.582 5.582 10 C 0.172 3.828 11 C -0.038 4.038 12 C -0.009 4.009 13 N -0.536 5.536 14 C 0.179 3.821 15 N -0.548 5.548 16 H 0.432 0.568 17 C -0.030 4.030 18 C 0.277 3.723 19 H 0.070 0.930 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.125 4.125 26 H 0.250 0.750 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.251 0.749 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -14.080 1.399 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.236 4.236 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.302 5.302 10 C 0.046 3.954 11 C -0.078 4.078 12 C -0.137 4.137 13 N -0.256 5.256 14 C -0.104 4.104 15 N -0.152 5.152 16 H 0.272 0.728 17 C -0.148 4.148 18 C 0.168 3.832 19 H 0.088 0.912 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.143 4.143 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.267 0.733 32 H 0.120 0.880 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.905 -13.851 1.480 15.129 hybrid contribution 0.869 1.058 -0.487 1.453 sum 6.774 -12.793 0.992 14.510 Atomic orbital electron populations 1.70163 1.06358 1.25681 1.53807 1.25743 0.95996 1.01128 1.00692 0.85258 0.78678 0.80095 0.76631 1.19215 1.22141 1.21731 1.19386 0.92854 0.85274 1.41976 0.91446 1.44303 1.35889 1.00703 1.49331 1.20828 0.85351 0.99262 0.89958 1.20260 0.98724 0.91687 0.97119 1.20604 0.89622 0.98425 1.05055 1.69916 1.35303 1.05046 1.15326 1.25788 0.79472 1.01817 1.03324 1.42787 1.10171 1.20395 1.41872 0.72769 1.21577 0.98709 0.91571 1.02931 1.17927 0.88579 0.83929 0.92720 0.91222 1.20456 0.95078 0.96932 0.96586 1.21169 0.99855 0.98295 0.94397 1.21366 0.95549 0.98853 0.99050 1.21414 0.94369 1.00494 0.98190 1.21393 1.00681 0.98069 0.93711 1.21206 0.93152 0.99350 1.00611 0.94044 0.91749 0.95598 0.92367 0.92858 0.73276 0.87997 0.84872 0.83479 0.83484 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.74 10.12 21.65 0.22 -52.52 16 2 C -0.04 -2.11 4.92 84.86 0.42 -1.69 16 3 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.27 -14.30 9.65 84.03 0.81 -13.49 16 8 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 9 N -0.58 -28.95 2.63 -681.27 -1.79 -30.74 16 10 C 0.17 8.48 5.09 86.36 0.44 8.92 16 11 C -0.04 -1.85 6.35 30.01 0.19 -1.65 16 12 C -0.01 -0.40 7.01 41.58 0.29 -0.11 16 13 N -0.54 -21.90 11.25 -187.86 -2.11 -24.01 16 14 C 0.18 5.33 13.05 180.10 2.35 7.68 16 15 N -0.55 -16.25 6.15 -186.33 -1.15 -17.39 16 16 H 0.43 9.15 8.96 -92.71 -0.83 8.32 16 17 C -0.03 -1.18 5.85 41.21 0.24 -0.94 16 18 C 0.28 11.49 3.07 43.36 0.13 11.62 16 19 H 0.07 2.89 7.77 -2.39 -0.02 2.87 16 20 C -0.09 -3.14 5.05 -19.87 -0.10 -3.24 16 21 C -0.12 -4.16 8.24 22.27 0.18 -3.98 16 22 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 23 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 24 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 25 C -0.12 -3.70 9.68 22.27 0.22 -3.49 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.06 3.54 5.97 -2.39 -0.01 3.53 16 28 H 0.03 1.21 5.08 -2.39 -0.01 1.20 16 29 H 0.06 3.25 7.11 -2.38 -0.02 3.23 16 30 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.25 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.10 3.99 5.63 -2.91 -0.02 3.98 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.13 3.40 7.96 -2.91 -0.02 3.38 16 Total: -1.00 -69.25 294.21 3.33 -65.93 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.28 Total: 21.65 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.84 Total: -9.31 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -4.83 Total: -124.67 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.25 3.33 -65.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931794450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.570 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds