Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08999 * 110.50668 * 38.98649 * 5 3 2 7 7 C 1.54094 * 110.56483 * 276.08814 * 5 3 2 8 8 O 1.45704 * 104.00825 * 241.42977 * 7 5 3 9 9 C 1.33770 * 109.47646 * 359.97438 * 8 7 5 10 10 O 1.21517 * 123.07322 * 180.02562 * 9 8 7 11 11 N 1.34005 * 113.85930 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 13 13 C 1.53950 * 113.74193 * 36.67524 * 12 2 1 14 14 N 1.47579 * 86.11789 * 222.05158 * 13 12 2 15 15 C 1.36943 * 134.48852 * 204.64582 * 14 13 12 16 16 H 1.08006 * 119.99603 * 179.97438 * 15 14 13 17 17 C 1.38806 * 120.00160 * 359.97438 * 15 14 13 18 18 N 1.31624 * 120.00232 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46902 * 90.00788 * 19 17 15 21 21 H 1.48501 * 109.46833 * 210.00386 * 19 17 15 22 22 H 1.48493 * 109.47026 * 330.00573 * 19 17 15 23 23 C 1.47579 * 91.01829 * 24.63734 * 14 13 12 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.08994 * 110.52099 * 0.05726 * 7 5 3 28 28 H 1.08992 * 110.52275 * 122.79870 * 7 5 3 29 29 H 0.96993 * 125.55991 * 180.02562 * 11 9 8 30 30 H 1.08997 * 112.94736 * 168.41062 * 12 2 1 31 31 H 1.09000 * 113.76491 * 336.35114 * 13 12 2 32 32 H 1.08997 * 113.76968 * 107.74392 * 13 12 2 33 33 H 0.96998 * 120.00131 * 179.97438 * 18 17 15 34 34 H 1.08994 * 113.77389 * 221.05958 * 23 14 13 35 35 H 1.09000 * 113.76637 * 89.66193 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.5046 2.4077 0.6324 7 6 0.9883 2.8610 -1.4436 8 8 1.6715 4.1283 -1.6677 9 6 2.3626 4.4623 -0.5721 10 8 3.0252 5.4776 -0.4899 11 7 2.2576 3.5749 0.4265 12 6 2.1975 -1.2687 0.0006 13 6 1.5286 -2.3710 -0.8406 14 7 1.8681 -3.2837 0.2683 15 6 2.0736 -4.6336 0.3714 16 1 2.3188 -5.0710 1.3281 17 6 1.9670 -5.4399 -0.7535 18 7 1.6688 -4.9068 -1.9194 19 14 2.2468 -7.2815 -0.6126 20 1 0.9585 -7.9562 -0.3124 21 1 2.7898 -7.7990 -1.8942 22 1 3.2143 -7.5529 0.4806 23 6 1.8972 -2.1573 1.2214 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.3354 2.1093 -2.1525 28 1 -0.0912 2.9902 -1.5201 29 1 2.6862 3.6480 1.2935 30 1 3.2615 -1.1452 -0.2011 31 1 0.4570 -2.2281 -0.9797 32 1 2.0533 -2.5940 -1.7696 33 1 1.5946 -5.4702 -2.7055 34 1 2.7161 -2.2097 1.9387 35 1 0.9338 -1.9517 1.6880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042674747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -29.785736 kcal Electronic energy + Delta-G solvation = -20840.541582 eV Core-core repulsion = 17455.861380 eV Total energy + Delta-G solvation = -3384.680203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01301 -39.86197 -37.88413 -37.23791 -34.91631 -34.72394 -32.14040 -30.12539 -27.83015 -26.93827 -25.15558 -24.96199 -23.02309 -22.60517 -20.36623 -18.77996 -18.43851 -17.98705 -17.07649 -16.95786 -16.53866 -15.82448 -15.26372 -14.91965 -14.87724 -14.48734 -14.07396 -13.90655 -13.61039 -13.35672 -12.75347 -12.65293 -12.23176 -11.97567 -11.70793 -11.45522 -11.10909 -10.99933 -10.90176 -10.80706 -10.47479 -10.36131 -10.15192 -9.69320 -9.34986 -8.92073 -8.42972 -7.04355 -5.90142 -3.23577 2.25859 2.35290 2.54355 2.87475 3.31515 3.33994 3.38263 3.39837 3.78243 4.08050 4.27604 4.37008 4.69887 4.88155 4.96423 5.05732 5.14711 5.24764 5.37520 5.52174 5.64890 5.89472 5.95185 6.26002 6.41069 6.49851 6.51947 6.96025 7.03616 7.13829 7.35896 7.45618 7.83779 7.84790 8.05103 8.91213 9.57264 10.41806 11.26970 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050358 B = 0.003820 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.889563 B = 7327.973449 C = 7412.487742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.498 3.502 4 O -0.524 6.524 5 C 0.073 3.927 6 H 0.127 0.873 7 C 0.056 3.944 8 O -0.323 6.323 9 C 0.652 3.348 10 O -0.522 6.522 11 N -0.710 5.710 12 C 0.088 3.912 13 C 0.158 3.842 14 N -0.605 5.605 15 C -0.226 4.226 16 H 0.083 0.917 17 C -0.004 4.004 18 N -0.920 5.920 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.109 3.891 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.440 0.560 30 H 0.117 0.883 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.256 0.744 34 H 0.048 0.952 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 13.080 3.624 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C 0.282 3.718 4 O -0.399 6.399 5 C -0.037 4.037 6 H 0.144 0.856 7 C -0.019 4.019 8 O -0.233 6.233 9 C 0.404 3.596 10 O -0.406 6.406 11 N -0.383 5.383 12 C -0.015 4.015 13 C 0.031 3.969 14 N -0.331 5.331 15 C -0.354 4.354 16 H 0.100 0.900 17 C -0.201 4.201 18 N -0.567 5.567 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.018 4.018 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.283 0.717 30 H 0.135 0.865 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.107 13.369 3.145 15.030 hybrid contribution -0.020 -1.352 0.575 1.469 sum -6.127 12.017 3.719 13.992 Atomic orbital electron populations 1.21964 0.79573 1.03468 1.02526 1.48111 1.07119 1.06031 1.71135 1.20470 0.88322 0.84980 0.78054 1.90765 1.13377 1.86801 1.48965 1.22449 0.95046 0.87842 0.98356 0.85565 1.24248 0.99415 0.84078 0.94196 1.87291 1.61092 1.38852 1.36083 1.18413 0.78803 0.83388 0.78953 1.91084 1.42641 1.26072 1.80824 1.45675 1.53131 1.21292 1.18167 1.24203 0.98145 0.79354 0.99815 1.22637 0.96616 0.83434 0.94178 1.45637 1.81090 1.02119 1.04276 1.18995 1.41364 0.80040 0.94982 0.89970 1.24802 1.01572 0.98374 0.95381 1.69797 1.53791 1.34349 0.98734 0.86078 0.77837 0.84520 0.77068 1.21500 1.21499 1.20497 1.22969 0.98201 0.87160 0.93502 0.91747 0.89645 0.91492 0.86916 0.86171 0.71665 0.86526 0.94900 0.90365 0.93440 0.93397 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.83 59.84 0.53 1.13 16 2 N -0.59 -7.62 3.09 -175.74 -0.54 -8.16 16 3 C 0.50 6.41 6.78 -10.98 -0.07 6.33 16 4 O -0.52 -9.18 16.09 5.55 0.09 -9.10 16 5 C 0.07 0.63 3.36 -68.19 -0.23 0.40 16 6 H 0.13 0.60 6.31 -51.93 -0.33 0.27 16 7 C 0.06 0.43 7.83 37.73 0.30 0.73 16 8 O -0.32 -3.90 11.09 -37.83 -0.42 -4.32 16 9 C 0.65 8.89 9.16 53.71 0.49 9.38 16 10 O -0.52 -9.06 18.04 -19.12 -0.34 -9.40 16 11 N -0.71 -7.49 5.66 -59.35 -0.34 -7.82 16 12 C 0.09 1.55 4.40 -70.14 -0.31 1.25 16 13 C 0.16 3.35 6.93 -2.97 -0.02 3.33 16 14 N -0.60 -14.56 3.70 -178.07 -0.66 -15.22 16 15 C -0.23 -6.08 10.70 -15.06 -0.16 -6.24 16 16 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -26.04 11.38 55.49 0.63 -25.41 16 19 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.11 2.06 8.46 -2.97 -0.03 2.03 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.89 6.36 -51.93 -0.33 0.56 16 26 H 0.07 0.33 5.95 -51.93 -0.31 0.02 16 27 H 0.11 0.89 7.72 -51.93 -0.40 0.49 16 28 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.44 4.06 8.96 -40.82 -0.37 3.70 16 30 H 0.12 2.32 7.24 -51.93 -0.38 1.94 16 31 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 32 H 0.08 1.91 7.15 -51.93 -0.37 1.54 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.62 6.97 -51.93 -0.36 0.25 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -35.35 295.82 -5.75 -41.10 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.01 Total: -0.57 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 0.40 Total: 18.11 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.91 Total: -56.62 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.68 Total: -22.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.35 -5.75 -41.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042674747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.317 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds