Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 H 1.08999 * 110.50668 * 38.98649 * 5 3 2 7 7 C 1.54094 * 110.56483 * 276.08814 * 5 3 2 8 8 O 1.45704 * 104.00825 * 241.42977 * 7 5 3 9 9 C 1.33770 * 109.47646 * 359.97438 * 8 7 5 10 10 O 1.21517 * 123.07322 * 180.02562 * 9 8 7 11 11 N 1.34005 * 113.85930 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 13 13 C 1.53950 * 113.74193 * 36.67524 * 12 2 1 14 14 N 1.47579 * 86.11789 * 222.05158 * 13 12 2 15 15 C 1.36943 * 134.48852 * 204.64582 * 14 13 12 16 16 H 1.08006 * 119.99603 * 179.97438 * 15 14 13 17 17 C 1.38806 * 120.00160 * 359.97438 * 15 14 13 18 18 N 1.31624 * 120.00232 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99924 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46902 * 90.00788 * 19 17 15 21 21 H 1.48501 * 109.46833 * 210.00386 * 19 17 15 22 22 H 1.48493 * 109.47026 * 330.00573 * 19 17 15 23 23 C 1.47579 * 91.01829 * 24.63734 * 14 13 12 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.08994 * 110.52099 * 0.05726 * 7 5 3 28 28 H 1.08992 * 110.52275 * 122.79870 * 7 5 3 29 29 H 0.96993 * 125.55991 * 180.02562 * 11 9 8 30 30 H 1.08997 * 112.94736 * 168.41062 * 12 2 1 31 31 H 1.09000 * 113.76491 * 336.35114 * 13 12 2 32 32 H 1.08997 * 113.76968 * 107.74392 * 13 12 2 33 33 H 0.96998 * 120.00131 * 179.97438 * 18 17 15 34 34 H 1.08994 * 113.77389 * 221.05958 * 23 14 13 35 35 H 1.09000 * 113.76637 * 89.66193 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 1 0.5046 2.4077 0.6324 7 6 0.9883 2.8610 -1.4436 8 8 1.6715 4.1283 -1.6677 9 6 2.3626 4.4623 -0.5721 10 8 3.0252 5.4776 -0.4899 11 7 2.2576 3.5749 0.4265 12 6 2.1975 -1.2687 0.0006 13 6 1.5286 -2.3710 -0.8406 14 7 1.8681 -3.2837 0.2683 15 6 2.0736 -4.6336 0.3714 16 1 2.3188 -5.0710 1.3281 17 6 1.9670 -5.4399 -0.7535 18 7 1.6688 -4.9068 -1.9194 19 14 2.2468 -7.2815 -0.6126 20 1 0.9585 -7.9562 -0.3124 21 1 2.7898 -7.7990 -1.8942 22 1 3.2143 -7.5529 0.4806 23 6 1.8972 -2.1573 1.2214 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.3354 2.1093 -2.1525 28 1 -0.0912 2.9902 -1.5201 29 1 2.6862 3.6480 1.2935 30 1 3.2615 -1.1452 -0.2011 31 1 0.4570 -2.2281 -0.9797 32 1 2.0533 -2.5940 -1.7696 33 1 1.5946 -5.4702 -2.7055 34 1 2.7161 -2.2097 1.9387 35 1 0.9338 -1.9517 1.6880 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042674747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -59.141069 kcal Electronic energy + Delta-G solvation = -20841.814525 eV Core-core repulsion = 17455.861380 eV Total energy + Delta-G solvation = -3385.953145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.90956 -41.06878 -39.31683 -38.31609 -36.04955 -35.74083 -34.03108 -31.06375 -29.45526 -27.89373 -26.60670 -26.19860 -24.51554 -23.53401 -21.68570 -20.09633 -19.29749 -18.99496 -18.69856 -18.00548 -17.73009 -17.06698 -16.65924 -16.35337 -15.94245 -15.67175 -15.28566 -15.05195 -14.67435 -14.48596 -13.89687 -13.73486 -13.49707 -13.22355 -13.16221 -12.95386 -12.82982 -12.56108 -12.09014 -12.03108 -11.98264 -11.89999 -11.54875 -11.46365 -10.87424 -10.30570 -9.61200 -8.95337 -7.93839 -5.27173 1.28379 1.37502 1.47061 1.48359 1.56827 1.64616 1.88208 2.46640 2.56551 3.07234 3.18988 3.28304 3.44176 3.73163 3.80285 3.98250 4.26963 4.32398 4.42162 4.46280 4.52272 4.72841 4.79848 4.87058 5.07057 5.18987 5.22394 5.48266 5.64445 5.67130 5.90415 6.07864 6.36641 6.88624 6.89757 7.02608 7.57466 8.49925 9.22930 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050358 B = 0.003820 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.889563 B = 7327.973449 C = 7412.487742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.586 5.586 3 C 0.497 3.503 4 O -0.578 6.578 5 C 0.086 3.914 6 H 0.184 0.816 7 C 0.051 3.949 8 O -0.338 6.338 9 C 0.649 3.351 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.114 3.886 13 C 0.162 3.838 14 N -0.639 5.639 15 C -0.237 4.237 16 H 0.084 0.916 17 C -0.061 4.061 18 N -0.950 5.950 19 Si 0.978 3.022 20 H -0.283 1.283 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.115 3.885 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.177 0.823 29 H 0.445 0.555 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.250 0.750 34 H 0.046 0.954 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 13.739 4.733 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.318 5.318 3 C 0.283 3.717 4 O -0.457 6.457 5 C -0.023 4.023 6 H 0.200 0.800 7 C -0.023 4.023 8 O -0.247 6.247 9 C 0.402 3.598 10 O -0.459 6.459 11 N -0.373 5.373 12 C 0.009 3.991 13 C 0.036 3.964 14 N -0.366 5.366 15 C -0.365 4.365 16 H 0.102 0.898 17 C -0.255 4.255 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.209 1.209 21 H -0.222 1.222 22 H -0.196 1.196 23 C -0.011 4.011 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.194 0.806 29 H 0.289 0.711 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.506 14.033 4.289 16.961 hybrid contribution 0.685 -1.553 0.241 1.715 sum -7.821 12.480 4.530 15.409 Atomic orbital electron populations 1.22357 0.76344 1.05449 1.04334 1.47996 1.08831 1.04247 1.70739 1.21243 0.87853 0.86172 0.76394 1.90759 1.16106 1.87634 1.51242 1.22714 0.95222 0.84142 1.00239 0.79953 1.24753 1.02073 0.82263 0.93181 1.87265 1.61192 1.40664 1.35610 1.18553 0.78451 0.83231 0.79545 1.91038 1.44748 1.28322 1.81829 1.45695 1.52938 1.20978 1.17689 1.23307 0.96741 0.81225 0.97816 1.22518 0.97013 0.84453 0.92434 1.45956 1.81553 1.02294 1.06790 1.19354 1.40272 0.81810 0.95049 0.89812 1.25582 1.02288 1.02374 0.95218 1.69971 1.55454 1.35338 0.99120 0.85091 0.77842 0.79759 0.76707 1.20947 1.22203 1.19581 1.23090 0.99433 0.85263 0.93267 0.90106 0.90970 0.86222 0.87398 0.80614 0.71090 0.89436 0.93485 0.94500 0.94114 0.93588 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 8.83 127.77 1.13 1.84 16 2 N -0.59 -13.53 3.09 -828.31 -2.56 -16.09 16 3 C 0.50 11.57 6.78 87.66 0.59 12.16 16 4 O -0.58 -20.09 16.09 -3.04 -0.05 -20.14 16 5 C 0.09 1.09 3.36 44.50 0.15 1.24 16 6 H 0.18 0.37 6.31 -2.39 -0.02 0.35 16 7 C 0.05 0.57 7.83 72.35 0.57 1.14 16 8 O -0.34 -7.39 11.09 -47.31 -0.52 -7.91 16 9 C 0.65 16.86 9.16 129.91 1.19 18.05 16 10 O -0.57 -19.93 18.04 19.63 0.35 -19.58 16 11 N -0.70 -13.07 5.66 -573.40 -3.24 -16.31 16 12 C 0.11 3.99 4.40 46.75 0.21 4.20 16 13 C 0.16 6.94 6.93 86.48 0.60 7.54 16 14 N -0.64 -30.87 3.70 -717.30 -2.65 -33.52 16 15 C -0.24 -12.79 10.70 84.03 0.90 -11.89 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 17 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 18 N -0.95 -55.03 11.38 21.65 0.25 -54.78 16 19 Si 0.98 44.27 29.55 68.60 2.03 46.30 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.12 4.23 8.46 86.48 0.73 4.96 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.20 6.36 -2.39 -0.02 1.18 16 26 H 0.12 0.28 5.95 -2.39 -0.01 0.27 16 27 H 0.11 1.36 7.72 -2.39 -0.02 1.34 16 28 H 0.18 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.44 7.37 8.96 -92.71 -0.83 6.54 16 30 H 0.09 3.60 7.24 -2.39 -0.02 3.58 16 31 H 0.05 1.87 6.71 -2.39 -0.02 1.86 16 32 H 0.04 1.87 7.15 -2.39 -0.02 1.86 16 33 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.07 6.97 -2.39 -0.02 2.06 16 Total: -1.00 -82.52 295.82 0.44 -82.09 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.31 Total: 3.62 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 6.53 Total: 36.34 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -8.21 Total: -120.71 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.22 Total: -47.63 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -82.52 0.44 -82.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042674747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.944 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds