Wall clock time and date at job start Mon Mar 30 2020 00:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99896 * 2 1 4 4 O 1.21282 * 119.99435 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00305 * 0.02562 * 3 2 1 6 6 H 1.09003 * 115.55267 * 34.41478 * 5 3 2 7 7 C 1.53008 * 117.49883 * 248.74523 * 5 3 2 8 8 C 1.53008 * 117.50146 * 180.08621 * 5 3 2 9 9 H 1.09003 * 117.49422 * 0.02562 * 8 5 3 10 10 N 1.46494 * 117.49806 * 214.98082 * 8 5 3 11 11 O 1.21803 * 119.99885 * 120.00103 * 10 8 5 12 12 O 1.21801 * 119.99774 * 299.99626 * 10 8 5 13 13 C 1.46503 * 119.99815 * 180.02562 * 2 1 3 14 14 C 1.53495 * 114.20729 * 299.99983 * 13 2 1 15 15 N 1.47068 * 87.98832 * 87.71725 * 14 13 2 16 16 C 1.36931 * 136.05648 * 207.08648 * 15 14 13 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.72253 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.47071 * 87.88415 * 27.34050 * 15 14 13 25 25 H 1.09004 * 109.46838 * 269.99834 * 1 2 3 26 26 H 1.09005 * 109.47368 * 29.99707 * 1 2 3 27 27 H 1.09004 * 109.47517 * 149.99714 * 1 2 3 28 28 H 1.08999 * 117.49981 * 0.02562 * 7 5 3 29 29 H 1.09003 * 117.49685 * 144.99599 * 7 5 3 30 30 H 1.08999 * 113.28076 * 166.93077 * 13 2 1 31 31 H 1.09004 * 113.46737 * 332.93771 * 14 13 2 32 32 H 1.09003 * 113.51807 * 202.50877 * 14 13 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 34 34 H 1.08998 * 113.46338 * 87.43811 * 24 15 14 35 35 H 1.08993 * 113.47050 * 217.87717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 0.0006 6 1 0.4480 2.4737 0.5568 7 6 1.4578 3.3303 -1.2641 8 6 2.2076 3.7627 -0.0015 9 1 3.2934 3.6676 -0.0037 10 7 1.6743 4.9056 0.7438 11 8 2.3150 5.3870 1.6610 12 8 0.5903 5.3745 0.4461 13 6 2.1975 -1.2688 -0.0006 14 6 1.9059 -2.1644 1.2114 15 7 0.7772 -2.7296 0.4569 16 6 -0.4241 -3.3093 0.7665 17 1 -0.7150 -3.4304 1.7996 18 6 -1.2709 -3.7356 -0.2475 19 7 -0.9166 -3.5875 -1.5064 20 14 -2.9131 -4.5194 0.1747 21 1 -3.0724 -4.5703 1.6503 22 1 -4.0123 -3.7136 -0.4149 23 1 -2.9597 -5.8978 -0.3756 24 6 1.5093 -2.4040 -0.7764 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 2.0501 2.9507 -2.0967 29 1 0.5680 3.8963 -1.5400 30 1 3.2575 -1.1541 -0.2269 31 1 1.6005 -1.6089 2.0982 32 1 2.6953 -2.8871 1.4181 33 1 -1.5081 -3.8857 -2.2150 34 1 2.1945 -3.1897 -1.0946 35 1 0.8661 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042705633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:00 Heat of formation + Delta-G solvation = 59.683195 kcal Electronic energy + Delta-G solvation = -20842.448670 eV Core-core repulsion = 17461.648132 eV Total energy + Delta-G solvation = -3380.800539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.45052 -40.32022 -38.43930 -36.86051 -36.24386 -34.32072 -32.23297 -28.43044 -27.84308 -26.40619 -25.07893 -24.73963 -22.91772 -22.37645 -20.27499 -19.30469 -18.58521 -18.42246 -17.47333 -17.13798 -16.64652 -15.99428 -15.37453 -14.97647 -14.40546 -13.88563 -13.80246 -13.21552 -12.81391 -12.73383 -12.58553 -11.96633 -11.84179 -11.61295 -11.53346 -11.42535 -11.22659 -11.17834 -11.12585 -11.00148 -10.75685 -10.23890 -10.03739 -9.92521 -9.59876 -8.99217 -8.25653 -7.07479 -5.94689 -3.27948 0.29037 1.37226 2.19107 2.89042 3.07743 3.27666 3.34844 3.36445 3.58276 3.91380 4.21620 4.31022 4.47531 4.88246 5.07182 5.13256 5.22827 5.29433 5.32081 5.55037 5.92114 5.98219 6.03597 6.16455 6.31364 6.36262 6.52072 6.76830 6.97736 7.05915 7.34245 7.46737 7.62875 7.78855 8.13291 8.86578 9.52328 10.44098 11.22073 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.004533 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.630428 B = 6175.112286 C = 6646.163924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.560 5.560 3 C 0.539 3.461 4 O -0.547 6.547 5 C -0.138 4.138 6 H 0.146 0.854 7 C -0.107 4.107 8 C -0.066 4.066 9 H 0.185 0.815 10 N 0.013 4.987 11 O -0.155 6.155 12 O -0.164 6.164 13 C 0.080 3.920 14 C 0.106 3.894 15 N -0.607 5.607 16 C -0.218 4.218 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.145 3.855 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.255 0.745 34 H 0.040 0.960 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 11.484 -0.483 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.288 5.288 3 C 0.325 3.675 4 O -0.426 6.426 5 C -0.161 4.161 6 H 0.164 0.836 7 C -0.144 4.144 8 C -0.165 4.165 9 H 0.202 0.798 10 N 0.534 4.466 11 O -0.374 6.374 12 O -0.381 6.381 13 C -0.025 4.025 14 C -0.022 4.022 15 N -0.333 5.333 16 C -0.345 4.345 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.019 3.981 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.287 10.687 -0.928 11.552 hybrid contribution -0.998 -0.485 0.500 1.217 sum 3.289 10.201 -0.428 10.727 Atomic orbital electron populations 1.22066 0.77737 1.04540 1.02577 1.47216 1.07926 1.04320 1.69378 1.19053 0.87044 0.83859 0.77567 1.90702 1.13303 1.87078 1.51530 1.22843 1.00545 0.88591 1.04072 0.83641 1.23658 1.02654 0.97917 0.90208 1.25045 1.01916 0.87394 1.02179 0.79764 1.43816 1.00360 1.02076 1.00335 1.94576 1.58944 1.62917 1.20999 1.94539 1.08274 1.63837 1.71456 1.22832 0.95641 0.83084 1.00942 1.22831 0.91114 0.93437 0.94791 1.45786 1.14174 1.71319 1.02055 1.18970 0.90212 1.32647 0.92648 0.90061 1.24762 0.98875 1.01360 0.95171 1.69811 1.37030 1.51854 0.98007 0.86069 0.83355 0.78893 0.77593 1.20452 1.21569 1.21688 1.22534 0.92475 0.90576 0.92532 0.92679 0.92758 0.86238 0.84732 0.84362 0.88086 0.93944 0.93681 0.93503 0.94188 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.11 59.85 0.55 1.72 16 2 N -0.56 -9.20 3.12 -173.55 -0.54 -9.74 16 3 C 0.54 8.12 7.46 -10.99 -0.08 8.04 16 4 O -0.55 -9.56 15.77 5.56 0.09 -9.48 16 5 C -0.14 -1.58 4.68 -91.77 -0.43 -2.01 16 6 H 0.15 1.56 7.27 -51.93 -0.38 1.18 16 7 C -0.11 -0.93 9.72 -26.69 -0.26 -1.19 16 8 C -0.07 -0.72 6.43 -67.89 -0.44 -1.16 16 9 H 0.19 1.99 7.67 -51.93 -0.40 1.60 16 10 N 0.01 0.17 4.33 -4.86 -0.02 0.14 16 11 O -0.16 -2.23 19.24 -29.46 -0.57 -2.80 16 12 O -0.16 -2.16 18.28 -29.46 -0.54 -2.70 16 13 C 0.08 1.44 4.67 -67.67 -0.32 1.12 16 14 C 0.11 2.05 8.31 -8.50 -0.07 1.98 16 15 N -0.61 -13.95 2.49 -184.60 -0.46 -14.41 16 16 C -0.22 -5.52 10.36 -15.06 -0.16 -5.68 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 19 N -0.92 -24.74 11.50 55.49 0.64 -24.10 16 20 Si 0.91 20.58 29.55 -169.99 -5.02 15.55 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.15 3.08 6.45 -8.36 -0.05 3.03 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.69 6.64 -51.93 -0.35 0.35 16 27 H 0.12 2.42 5.41 -51.93 -0.28 2.14 16 28 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.14 1.00 7.63 -51.93 -0.40 0.61 16 30 H 0.10 1.76 7.29 -51.93 -0.38 1.38 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.84 6.25 -51.93 -0.32 1.52 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -29.09 303.31 -7.37 -36.46 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.16 Total: 0.86 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.36 Total: 5.63 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.38 Total: -48.11 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.02 Total: -14.97 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.09 -7.37 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042705633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.147 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds