Wall clock time and date at job start Mon Mar 30 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99896 * 2 1 4 4 O 1.21282 * 119.99435 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00305 * 0.02562 * 3 2 1 6 6 H 1.09003 * 115.55267 * 34.41478 * 5 3 2 7 7 C 1.53008 * 117.49883 * 248.74523 * 5 3 2 8 8 C 1.53008 * 117.50146 * 180.08621 * 5 3 2 9 9 H 1.09003 * 117.49422 * 0.02562 * 8 5 3 10 10 N 1.46494 * 117.49806 * 214.98082 * 8 5 3 11 11 O 1.21803 * 119.99885 * 120.00103 * 10 8 5 12 12 O 1.21801 * 119.99774 * 299.99626 * 10 8 5 13 13 C 1.46503 * 119.99815 * 180.02562 * 2 1 3 14 14 C 1.53495 * 114.20729 * 299.99983 * 13 2 1 15 15 N 1.47068 * 87.98832 * 87.71725 * 14 13 2 16 16 C 1.36931 * 136.05648 * 207.08648 * 15 14 13 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99680 * 179.72253 * 16 15 14 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.47071 * 87.88415 * 27.34050 * 15 14 13 25 25 H 1.09004 * 109.46838 * 269.99834 * 1 2 3 26 26 H 1.09005 * 109.47368 * 29.99707 * 1 2 3 27 27 H 1.09004 * 109.47517 * 149.99714 * 1 2 3 28 28 H 1.08999 * 117.49981 * 0.02562 * 7 5 3 29 29 H 1.09003 * 117.49685 * 144.99599 * 7 5 3 30 30 H 1.08999 * 113.28076 * 166.93077 * 13 2 1 31 31 H 1.09004 * 113.46737 * 332.93771 * 14 13 2 32 32 H 1.09003 * 113.51807 * 202.50877 * 14 13 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 34 34 H 1.08998 * 113.46338 * 87.43811 * 24 15 14 35 35 H 1.08993 * 113.47050 * 217.87717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 0.0006 6 1 0.4480 2.4737 0.5568 7 6 1.4578 3.3303 -1.2641 8 6 2.2076 3.7627 -0.0015 9 1 3.2934 3.6676 -0.0037 10 7 1.6743 4.9056 0.7438 11 8 2.3150 5.3870 1.6610 12 8 0.5903 5.3745 0.4461 13 6 2.1975 -1.2688 -0.0006 14 6 1.9059 -2.1644 1.2114 15 7 0.7772 -2.7296 0.4569 16 6 -0.4241 -3.3093 0.7665 17 1 -0.7150 -3.4304 1.7996 18 6 -1.2709 -3.7356 -0.2475 19 7 -0.9166 -3.5875 -1.5064 20 14 -2.9131 -4.5194 0.1747 21 1 -3.0724 -4.5703 1.6503 22 1 -4.0123 -3.7136 -0.4149 23 1 -2.9597 -5.8978 -0.3756 24 6 1.5093 -2.4040 -0.7764 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 2.0501 2.9507 -2.0967 29 1 0.5680 3.8963 -1.5400 30 1 3.2575 -1.1541 -0.2269 31 1 1.6005 -1.6089 2.0982 32 1 2.6953 -2.8871 1.4181 33 1 -1.5081 -3.8857 -2.2150 34 1 2.1945 -3.1897 -1.0946 35 1 0.8661 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042705633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:59 Heat of formation + Delta-G solvation = 42.913768 kcal Electronic energy + Delta-G solvation = -20843.175847 eV Core-core repulsion = 17461.648132 eV Total energy + Delta-G solvation = -3381.527716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.42503 -41.60338 -39.84960 -37.90061 -37.27271 -35.74717 -34.09675 -30.00932 -29.00145 -27.78690 -26.42869 -26.25171 -24.42431 -23.31685 -21.59847 -20.29299 -19.81787 -19.54888 -18.75451 -18.46286 -18.01174 -17.29459 -16.81164 -16.58341 -15.78946 -15.54176 -14.90743 -14.52944 -14.48762 -14.05206 -13.67244 -13.28302 -13.24673 -12.83141 -12.78520 -12.71494 -12.60001 -12.48490 -12.35633 -12.26170 -12.10665 -11.98128 -11.74024 -11.36710 -11.22588 -10.85087 -9.65254 -8.93326 -7.89958 -5.23122 -0.74274 0.43851 1.11446 1.47666 1.50665 1.58408 1.74565 2.11107 2.47018 2.66597 3.05900 3.18099 3.32138 3.44354 3.55092 3.74745 4.06416 4.29790 4.38083 4.45842 4.47900 4.57430 4.69312 4.77317 4.84697 5.00152 5.16976 5.21019 5.30506 5.45017 5.60251 5.89114 6.34637 6.41860 6.88293 6.91594 7.59696 8.57940 9.26484 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.004533 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.630428 B = 6175.112286 C = 6646.163924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.567 5.567 3 C 0.543 3.457 4 O -0.571 6.571 5 C -0.145 4.145 6 H 0.158 0.842 7 C -0.075 4.075 8 C -0.070 4.070 9 H 0.185 0.815 10 N 0.016 4.984 11 O -0.199 6.199 12 O -0.147 6.147 13 C 0.102 3.898 14 C 0.107 3.893 15 N -0.626 5.626 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.051 4.051 19 N -0.945 5.945 20 Si 0.969 3.031 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.299 1.299 24 C 0.147 3.853 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.162 0.838 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.249 0.751 34 H 0.033 0.967 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 12.666 -0.634 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.295 5.295 3 C 0.331 3.669 4 O -0.452 6.452 5 C -0.168 4.168 6 H 0.175 0.825 7 C -0.113 4.113 8 C -0.169 4.169 9 H 0.202 0.798 10 N 0.535 4.465 11 O -0.409 6.409 12 O -0.371 6.371 13 C -0.003 4.003 14 C -0.020 4.020 15 N -0.353 5.353 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.245 4.245 19 N -0.594 5.594 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.215 1.215 23 H -0.226 1.226 24 C 0.020 3.980 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.130 0.870 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.918 11.900 -1.002 12.569 hybrid contribution -0.849 -0.846 0.518 1.306 sum 3.069 11.054 -0.484 11.482 Atomic orbital electron populations 1.21914 0.77444 1.04338 1.02214 1.47244 1.08056 1.04257 1.69976 1.19494 0.86818 0.84421 0.76147 1.90697 1.14566 1.87541 1.52372 1.22746 1.00444 0.86674 1.06894 0.82457 1.23969 1.02935 0.95261 0.89124 1.25112 1.02036 0.86327 1.03472 0.79824 1.44052 1.00090 1.02292 1.00047 1.94593 1.59492 1.64361 1.22417 1.94513 1.08181 1.63681 1.70774 1.22502 0.95926 0.83162 0.98759 1.22942 0.90169 0.93717 0.95150 1.45948 1.14553 1.71180 1.03577 1.19187 0.91314 1.31838 0.92580 0.90245 1.25381 1.01592 1.02363 0.95134 1.69960 1.37821 1.53023 0.98578 0.85161 0.80087 0.77343 0.77603 1.19557 1.21543 1.22611 1.22452 0.92000 0.91675 0.91826 0.93066 0.89039 0.90306 0.83090 0.81998 0.87027 0.93689 0.92486 0.94158 0.94977 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 9.11 127.77 1.16 3.73 16 2 N -0.57 -17.78 3.12 -821.38 -2.56 -20.34 16 3 C 0.54 15.20 7.46 87.66 0.65 15.85 16 4 O -0.57 -18.94 15.77 -3.04 -0.05 -18.99 16 5 C -0.15 -2.89 4.68 -11.54 -0.05 -2.94 16 6 H 0.16 2.81 7.27 -2.39 -0.02 2.80 16 7 C -0.08 -1.01 9.72 30.62 0.30 -0.71 16 8 C -0.07 -1.35 6.43 45.02 0.29 -1.06 16 9 H 0.18 3.63 7.67 -2.39 -0.02 3.61 16 10 N 0.02 0.38 4.33 -169.27 -0.73 -0.35 16 11 O -0.20 -5.60 19.24 18.88 0.36 -5.23 16 12 O -0.15 -3.45 18.28 18.88 0.35 -3.11 16 13 C 0.10 3.59 4.67 45.55 0.21 3.80 16 14 C 0.11 4.05 8.31 83.18 0.69 4.74 16 15 N -0.63 -28.81 2.49 -737.94 -1.84 -30.65 16 16 C -0.22 -11.25 10.36 84.04 0.87 -10.38 16 17 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 18 C -0.05 -2.62 5.50 84.86 0.47 -2.16 16 19 N -0.95 -51.58 11.50 21.65 0.25 -51.33 16 20 Si 0.97 42.40 29.55 68.60 2.03 44.43 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.15 6.28 6.45 83.27 0.54 6.82 16 25 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.09 2.08 6.64 -2.38 -0.02 2.07 16 27 H 0.08 3.19 5.41 -2.38 -0.01 3.18 16 28 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.16 1.51 7.63 -2.39 -0.02 1.50 16 30 H 0.11 3.74 7.29 -2.39 -0.02 3.73 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.25 13.35 8.31 -92.70 -0.77 12.58 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 2.72 6.25 -2.39 -0.01 2.70 16 Total: -1.00 -62.69 303.31 4.05 -58.64 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.12 Total: 9.23 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.13 Total: 17.70 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.88 Total: -102.67 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 0.66 Total: -27.33 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -62.69 4.05 -58.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042705633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.556 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds