Wall clock time and date at job start Mon Mar 30 2020 00:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46670 * 2 1 4 4 O 1.42890 * 109.47310 * 120.00447 * 2 1 3 5 5 C 1.50698 * 109.46736 * 240.00659 * 2 1 3 6 6 C 1.35347 * 126.75558 * 125.00195 * 5 2 1 7 7 N 1.35308 * 106.17795 * 180.02562 * 6 5 2 8 8 C 1.46499 * 125.87035 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47547 * 124.99630 * 8 7 6 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00262 * 179.72203 * 9 8 7 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 C 1.52994 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99561 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46972 * 60.00315 * 18 16 14 20 20 H 1.48502 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47336 * 299.99813 * 18 16 14 22 22 N 1.28720 * 108.26557 * 0.26208 * 7 6 5 23 23 N 1.28638 * 110.17202 * 359.55869 * 22 7 6 24 24 H 1.09004 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47001 * 299.99667 * 1 2 3 26 26 H 1.08996 * 109.47793 * 59.99363 * 1 2 3 27 27 H 0.96700 * 114.00774 * 59.99347 * 4 2 1 28 28 H 1.08000 * 126.90818 * 359.97438 * 6 5 2 29 29 H 1.09004 * 109.47039 * 4.99814 * 8 7 6 30 30 H 1.09000 * 109.47206 * 245.00357 * 8 7 6 31 31 H 1.08998 * 109.47630 * 300.00638 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.01042 * 12 11 9 33 33 H 1.08997 * 109.47687 * 300.00275 * 13 12 11 34 34 H 1.09002 * 109.47633 * 60.00402 * 13 12 11 35 35 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0323 -0.7103 -1.2306 6 6 2.8886 -0.2191 -2.1564 7 7 3.0532 -1.1987 -3.0751 8 6 3.8974 -1.1221 -4.2700 9 6 4.8688 -2.2742 -4.2735 10 8 4.8568 -3.0773 -3.3708 11 8 5.7432 -2.4117 -5.2826 12 6 6.6449 -3.5483 -5.2232 13 6 7.5602 -3.5376 -6.4490 14 6 8.4957 -4.7176 -6.3878 15 1 8.4423 -5.4064 -5.5577 16 6 9.4196 -4.9177 -7.3914 17 7 9.4849 -4.0786 -8.4019 18 14 10.5796 -6.3799 -7.3150 19 1 9.7902 -7.6376 -7.2981 20 1 11.4680 -6.3697 -8.5049 21 1 11.4023 -6.2952 -6.0817 22 7 2.3357 -2.2075 -2.7221 23 7 1.7189 -1.9502 -1.6229 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7210 -1.5952 1.2329 28 1 3.3476 0.7585 -2.1614 29 1 4.4489 -0.1819 -4.2655 30 1 3.2714 -1.1718 -5.1609 31 1 7.2493 -3.4857 -4.3183 32 1 6.0654 -4.4714 -5.2100 33 1 6.9562 -3.6000 -7.3542 34 1 8.1397 -2.6145 -6.4619 35 1 10.1347 -4.2196 -9.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116747257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:55 Heat of formation + Delta-G solvation = -43.502114 kcal Electronic energy + Delta-G solvation = -19605.792764 eV Core-core repulsion = 16220.517774 eV Total energy + Delta-G solvation = -3385.274989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.53374 -40.20242 -37.75455 -36.49608 -34.70831 -33.45182 -32.23494 -30.64808 -29.96578 -28.91975 -25.18234 -24.40142 -22.89324 -21.90372 -21.04339 -20.48156 -18.00006 -17.98583 -16.91045 -16.60881 -16.28863 -16.05791 -15.62011 -15.54680 -14.89371 -14.54274 -14.42661 -14.05448 -13.11839 -12.91624 -12.77685 -12.42757 -12.30429 -12.14634 -11.40356 -11.37166 -11.20524 -11.15013 -10.88446 -10.84187 -10.70467 -10.53143 -10.24592 -9.81427 -9.73494 -9.47357 -9.40643 -8.51512 -6.17777 -4.22724 1.27076 1.83813 2.16745 2.27159 2.86516 3.26105 3.30220 3.33571 3.90249 4.19419 4.26162 4.32018 4.41154 4.59739 4.61453 4.77540 4.86663 5.05893 5.19089 5.33084 5.40369 5.67903 5.74353 5.90044 5.94577 5.94695 6.20688 6.48996 6.69982 7.32548 7.42876 7.50208 7.73941 7.89697 8.14048 8.29351 8.82302 9.42299 10.93582 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.054270 B = 0.002807 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.811795 B = 9971.641958 C =10214.566360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.196 3.804 3 H 0.113 0.887 4 O -0.556 6.556 5 C -0.062 4.062 6 C -0.032 4.032 7 N -0.285 5.285 8 C 0.123 3.877 9 C 0.442 3.558 10 O -0.487 6.487 11 O -0.351 6.351 12 C 0.077 3.923 13 C 0.026 3.974 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.050 5.050 23 N -0.260 5.260 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.383 0.617 28 H 0.194 0.806 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 12.755 11.253 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.135 3.865 3 H 0.131 0.869 4 O -0.362 6.362 5 C -0.200 4.200 6 C -0.182 4.182 7 N -0.079 5.079 8 C 0.000 4.000 9 C 0.282 3.718 10 O -0.374 6.374 11 O -0.267 6.267 12 C 0.005 3.995 13 C -0.011 4.011 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.029 5.029 23 N -0.129 5.129 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.232 0.768 28 H 0.211 0.789 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.482 11.655 11.072 22.319 hybrid contribution 0.980 -0.305 -0.141 1.036 sum -14.502 11.350 10.931 21.415 Atomic orbital electron populations 1.22440 0.95040 1.03574 1.02648 1.20033 0.93133 0.94557 0.78800 0.86887 1.86552 1.77442 1.29965 1.42213 1.22828 1.02180 0.94136 1.00858 1.23414 1.04711 0.97670 0.92362 1.46885 1.31122 1.10873 1.19006 1.21434 0.92254 0.99817 0.86498 1.22940 0.81344 0.86071 0.81472 1.90773 1.68302 1.42070 1.36221 1.86495 1.44808 1.50872 1.44503 1.23787 0.89244 0.83677 1.02803 1.19184 0.92866 0.98410 0.90678 1.20918 1.17740 1.10059 1.08031 0.92258 1.24974 0.97273 0.96732 0.95074 1.69953 1.35860 1.36458 1.10525 0.86510 0.80527 0.82546 0.77610 1.19998 1.21058 1.20021 1.78474 1.04710 1.10185 1.09577 1.75027 1.19183 1.13507 1.05164 0.91371 0.91271 0.91560 0.76826 0.78867 0.83390 0.83937 0.92048 0.91885 0.95214 0.95266 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.51 37.16 0.35 -0.90 16 2 C 0.20 1.64 4.09 -27.88 -0.11 1.52 16 3 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 4 O -0.56 -5.59 13.33 -35.23 -0.47 -6.06 16 5 C -0.06 -0.69 6.10 -82.78 -0.50 -1.19 16 6 C -0.03 -0.30 11.49 -17.05 -0.20 -0.50 16 7 N -0.28 -3.41 3.19 -62.45 -0.20 -3.61 16 8 C 0.12 1.18 7.05 -5.20 -0.04 1.14 16 9 C 0.44 6.91 7.97 36.00 0.29 7.19 16 10 O -0.49 -9.56 15.44 -18.76 -0.29 -9.85 16 11 O -0.35 -6.26 10.22 -39.26 -0.40 -6.66 16 12 C 0.08 1.63 5.40 37.15 0.20 1.83 16 13 C 0.03 0.65 5.35 -27.89 -0.15 0.50 16 14 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 N -0.05 -0.77 12.15 60.35 0.73 -0.04 16 23 N -0.26 -3.75 12.40 33.29 0.41 -3.34 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.38 3.20 9.04 45.56 0.41 3.61 16 28 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.15 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -35.44 316.87 -4.07 -39.51 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.77 Total: -2.09 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.57 Total: -3.67 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 1.68 Total: -32.05 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -1.16 Total: -22.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.44 -4.07 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116747257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.992 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds