Wall clock time and date at job start Mon Mar 30 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46670 * 2 1 4 4 O 1.42890 * 109.47310 * 120.00447 * 2 1 3 5 5 C 1.50698 * 109.46736 * 240.00659 * 2 1 3 6 6 C 1.35347 * 126.75558 * 125.00195 * 5 2 1 7 7 N 1.35308 * 106.17795 * 180.02562 * 6 5 2 8 8 C 1.46499 * 125.87035 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47547 * 124.99630 * 8 7 6 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00262 * 179.72203 * 9 8 7 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 C 1.52994 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99561 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46972 * 60.00315 * 18 16 14 20 20 H 1.48502 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47336 * 299.99813 * 18 16 14 22 22 N 1.28720 * 108.26557 * 0.26208 * 7 6 5 23 23 N 1.28638 * 110.17202 * 359.55869 * 22 7 6 24 24 H 1.09004 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47001 * 299.99667 * 1 2 3 26 26 H 1.08996 * 109.47793 * 59.99363 * 1 2 3 27 27 H 0.96700 * 114.00774 * 59.99347 * 4 2 1 28 28 H 1.08000 * 126.90818 * 359.97438 * 6 5 2 29 29 H 1.09004 * 109.47039 * 4.99814 * 8 7 6 30 30 H 1.09000 * 109.47206 * 245.00357 * 8 7 6 31 31 H 1.08998 * 109.47630 * 300.00638 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.01042 * 12 11 9 33 33 H 1.08997 * 109.47687 * 300.00275 * 13 12 11 34 34 H 1.09002 * 109.47633 * 60.00402 * 13 12 11 35 35 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0323 -0.7103 -1.2306 6 6 2.8886 -0.2191 -2.1564 7 7 3.0532 -1.1987 -3.0751 8 6 3.8974 -1.1221 -4.2700 9 6 4.8688 -2.2742 -4.2735 10 8 4.8568 -3.0773 -3.3708 11 8 5.7432 -2.4117 -5.2826 12 6 6.6449 -3.5483 -5.2232 13 6 7.5602 -3.5376 -6.4490 14 6 8.4957 -4.7176 -6.3878 15 1 8.4423 -5.4064 -5.5577 16 6 9.4196 -4.9177 -7.3914 17 7 9.4849 -4.0786 -8.4019 18 14 10.5796 -6.3799 -7.3150 19 1 9.7902 -7.6376 -7.2981 20 1 11.4680 -6.3697 -8.5049 21 1 11.4023 -6.2952 -6.0817 22 7 2.3357 -2.2075 -2.7221 23 7 1.7189 -1.9502 -1.6229 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7210 -1.5952 1.2329 28 1 3.3476 0.7585 -2.1614 29 1 4.4489 -0.1819 -4.2655 30 1 3.2714 -1.1718 -5.1609 31 1 7.2493 -3.4857 -4.3183 32 1 6.0654 -4.4714 -5.2100 33 1 6.9562 -3.6000 -7.3542 34 1 8.1397 -2.6145 -6.4619 35 1 10.1347 -4.2196 -9.1082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116747257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:54 Heat of formation + Delta-G solvation = -70.881478 kcal Electronic energy + Delta-G solvation = -19606.980022 eV Core-core repulsion = 16220.517774 eV Total energy + Delta-G solvation = -3386.462248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.38852 -41.56351 -38.47783 -37.90820 -35.64721 -35.47686 -32.99290 -32.47769 -30.75312 -29.89826 -27.06832 -25.14865 -24.04573 -23.02845 -22.57317 -21.52516 -19.29408 -18.84123 -18.38413 -17.96909 -17.50270 -17.26656 -16.75490 -16.42085 -16.29014 -15.63572 -15.44968 -15.09173 -14.45076 -14.39342 -14.08102 -13.52506 -13.17573 -13.10518 -12.96588 -12.88584 -12.64541 -12.62594 -12.15360 -12.09244 -11.88256 -11.70436 -11.56850 -11.50407 -11.25870 -11.13202 -10.63085 -10.28666 -8.29807 -6.42658 0.41458 0.94277 1.04026 1.40004 1.41323 1.42497 1.50599 1.75234 2.37432 3.04938 3.17280 3.43280 3.59235 3.64275 3.77920 3.98421 4.06855 4.16038 4.18565 4.30877 4.37839 4.63196 4.65697 4.79944 5.04932 5.11057 5.16337 5.35179 5.43655 5.44126 5.44450 5.70348 6.03680 6.50944 6.66441 6.70418 7.27145 7.41067 8.82249 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.054270 B = 0.002807 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.811795 B = 9971.641958 C =10214.566360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.195 3.805 3 H 0.143 0.857 4 O -0.573 6.573 5 C -0.078 4.078 6 C -0.012 4.012 7 N -0.290 5.290 8 C 0.131 3.869 9 C 0.441 3.559 10 O -0.531 6.531 11 O -0.352 6.352 12 C 0.094 3.906 13 C 0.032 3.968 14 C -0.554 4.554 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.267 1.267 22 N -0.108 5.108 23 N -0.289 5.289 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.386 0.614 28 H 0.247 0.753 29 H 0.204 0.796 30 H 0.174 0.826 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.010 0.990 34 H 0.013 0.987 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 14.479 11.675 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.134 3.866 3 H 0.160 0.840 4 O -0.379 6.379 5 C -0.217 4.217 6 C -0.162 4.162 7 N -0.084 5.084 8 C 0.010 3.990 9 C 0.283 3.717 10 O -0.420 6.420 11 O -0.267 6.267 12 C 0.020 3.980 13 C -0.005 4.005 14 C -0.592 4.592 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.192 1.192 22 N -0.087 5.087 23 N -0.157 5.157 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.263 0.737 29 H 0.221 0.779 30 H 0.191 0.809 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.031 0.969 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.452 13.374 11.492 23.445 hybrid contribution 0.900 -0.738 -0.231 1.186 sum -14.552 12.637 11.261 22.321 Atomic orbital electron populations 1.22383 0.94356 1.02754 1.03606 1.20346 0.93747 0.95240 0.77229 0.83988 1.86523 1.77868 1.30394 1.43074 1.23415 1.02762 0.93363 1.02150 1.24277 1.02955 0.98656 0.90318 1.47109 1.30668 1.10803 1.19782 1.21886 0.91311 0.98795 0.87025 1.24135 0.80812 0.87040 0.79706 1.90767 1.69388 1.44194 1.37683 1.86469 1.45094 1.49301 1.45864 1.23192 0.89336 0.84789 1.00642 1.18973 0.92894 0.97015 0.91600 1.21335 1.18562 1.10941 1.08338 0.92055 1.25894 0.98904 0.99610 0.94574 1.70060 1.36732 1.38233 1.11227 0.85433 0.78340 0.78900 0.78000 1.19303 1.20308 1.19152 1.78431 1.07063 1.12357 1.10879 1.74953 1.19861 1.15507 1.05385 0.93104 0.89991 0.90820 0.76515 0.73693 0.77869 0.80906 0.92231 0.92561 0.97164 0.96899 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.51 71.98 0.68 -1.48 16 2 C 0.19 2.84 4.09 29.85 0.12 2.96 16 3 H 0.14 1.20 8.12 -2.39 -0.02 1.18 16 4 O -0.57 -10.88 13.33 -148.98 -1.99 -12.86 16 5 C -0.08 -1.59 6.10 41.59 0.25 -1.33 16 6 C -0.01 -0.18 11.49 83.49 0.96 0.78 16 7 N -0.29 -6.24 3.19 -351.48 -1.12 -7.36 16 8 C 0.13 2.06 7.05 85.63 0.60 2.66 16 9 C 0.44 13.22 7.97 71.23 0.57 13.79 16 10 O -0.53 -20.94 15.44 21.94 0.34 -20.60 16 11 O -0.35 -12.31 10.22 -51.41 -0.53 -12.84 16 12 C 0.09 4.02 5.40 71.98 0.39 4.41 16 13 C 0.03 1.67 5.35 29.85 0.16 1.83 16 14 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.92 -54.00 13.29 21.45 0.28 -53.71 16 18 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 N -0.11 -3.33 12.15 37.02 0.45 -2.88 16 23 N -0.29 -8.33 12.40 -48.60 -0.60 -8.93 16 24 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.39 6.52 9.04 -74.06 -0.67 5.85 16 28 H 0.25 0.84 8.06 -2.91 -0.02 0.81 16 29 H 0.20 0.93 8.07 -2.38 -0.02 0.91 16 30 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 32 H 0.06 2.47 8.13 -2.38 -0.02 2.45 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -80.45 316.87 3.74 -76.71 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.44 Total: 3.38 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.44 Total: -6.03 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -0.99 Total: -72.89 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.17 Total: -46.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -80.45 3.74 -76.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116747257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.824 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds