Wall clock time and date at job start Mon Mar 30 2020 00:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47322 * 2 1 4 4 O 1.42890 * 109.47616 * 239.99246 * 2 1 3 5 5 C 1.50703 * 109.46800 * 119.99607 * 2 1 3 6 6 C 1.35347 * 126.75466 * 125.00508 * 5 2 1 7 7 N 1.35308 * 106.17795 * 179.97438 * 6 5 2 8 8 C 1.46499 * 125.87035 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47547 * 124.99630 * 8 7 6 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00262 * 179.72203 * 9 8 7 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 C 1.52994 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99561 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46972 * 60.00315 * 18 16 14 20 20 H 1.48502 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47336 * 299.99813 * 18 16 14 22 22 N 1.28720 * 108.26557 * 0.26208 * 7 6 5 23 23 N 1.28638 * 110.17202 * 359.55869 * 22 7 6 24 24 H 1.08995 * 109.47398 * 300.00868 * 1 2 3 25 25 H 1.09007 * 109.46845 * 60.00554 * 1 2 3 26 26 H 1.09002 * 109.47322 * 180.02562 * 1 2 3 27 27 H 0.96702 * 114.00407 * 300.00406 * 4 2 1 28 28 H 1.07995 * 126.90678 * 359.97438 * 6 5 2 29 29 H 1.09004 * 109.47039 * 4.99814 * 8 7 6 30 30 H 1.09000 * 109.47206 * 245.00357 * 8 7 6 31 31 H 1.08998 * 109.47630 * 300.00638 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.01042 * 12 11 9 33 33 H 1.08997 * 109.47687 * 300.00275 * 13 12 11 34 34 H 1.09002 * 109.47633 * 60.00402 * 13 12 11 35 35 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0323 -0.7104 1.2306 6 6 2.8887 -1.7577 1.2683 7 7 3.0541 -2.0626 2.5761 8 6 3.8987 -3.1352 3.1074 9 6 4.8708 -2.5615 4.1058 10 8 4.8590 -1.3780 4.3491 11 8 5.7457 -3.3662 4.7294 12 6 6.6480 -2.7457 5.6829 13 6 7.5638 -3.8122 6.2868 14 6 8.4999 -3.1685 7.2769 15 1 8.4467 -2.1050 7.4577 16 6 9.4243 -3.9371 7.9520 17 7 9.4895 -5.2319 7.7315 18 14 10.5851 -3.1389 9.1787 19 1 9.7964 -2.4946 10.2596 20 1 11.4740 -4.1740 9.7650 21 1 11.4074 -2.1136 8.4874 22 7 2.3371 -1.2520 3.2731 23 7 1.7198 -0.4293 2.5006 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.7211 -1.5953 -1.2327 28 1 3.3477 -2.2509 0.4242 29 1 4.4497 -3.6020 2.2908 30 1 3.2731 -3.8816 3.5969 31 1 7.2520 -1.9937 5.1754 32 1 6.0691 -2.2722 6.4759 33 1 6.9601 -4.5646 6.7943 34 1 8.1428 -4.2855 5.4937 35 1 10.1397 -5.7727 8.2067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116747258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:56 Heat of formation + Delta-G solvation = -42.659045 kcal Electronic energy + Delta-G solvation = -19617.989020 eV Core-core repulsion = 16232.750588 eV Total energy + Delta-G solvation = -3385.238431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.53404 -40.20107 -37.93652 -36.51041 -34.79879 -33.45230 -32.01615 -30.67180 -30.13810 -28.87598 -25.17308 -24.40851 -22.88254 -21.76878 -21.10529 -20.58889 -18.11664 -17.99850 -16.93405 -16.59292 -16.32778 -16.08393 -15.70216 -15.49841 -14.87727 -14.54324 -14.44641 -14.02211 -13.13757 -12.93111 -12.78841 -12.42704 -12.38859 -12.11443 -11.50312 -11.37165 -11.19635 -11.14585 -10.88767 -10.84131 -10.77579 -10.63777 -10.22245 -9.81307 -9.73363 -9.41122 -9.39585 -8.51447 -6.17710 -4.22652 1.27859 1.84293 2.16953 2.30261 2.86772 3.26129 3.30245 3.33593 3.81434 3.93249 4.30388 4.32602 4.46593 4.60401 4.68394 4.77878 4.85653 5.04343 5.19150 5.38205 5.39420 5.70924 5.73849 5.88593 5.90182 5.94702 6.21677 6.49107 6.70124 7.15081 7.42985 7.50321 7.74046 7.89841 8.14131 8.30909 8.82370 9.42360 10.93650 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.058079 B = 0.002778 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.990008 B =10075.705331 C =10202.811647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.194 3.806 3 H 0.117 0.883 4 O -0.554 6.554 5 C -0.061 4.061 6 C -0.036 4.036 7 N -0.285 5.285 8 C 0.123 3.877 9 C 0.442 3.558 10 O -0.487 6.487 11 O -0.351 6.351 12 C 0.077 3.923 13 C 0.026 3.974 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.050 5.050 23 N -0.258 5.258 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.376 0.624 28 H 0.195 0.805 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.554 2.771 -17.031 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.133 3.867 3 H 0.135 0.865 4 O -0.359 6.359 5 C -0.199 4.199 6 C -0.186 4.186 7 N -0.079 5.079 8 C 0.000 4.000 9 C 0.282 3.718 10 O -0.374 6.374 11 O -0.267 6.267 12 C 0.005 3.995 13 C -0.011 4.011 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.030 5.030 23 N -0.127 5.127 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.224 0.776 28 H 0.212 0.788 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.544 3.928 -15.553 22.337 hybrid contribution 0.995 -0.564 -0.027 1.144 sum -14.549 3.363 -15.581 21.581 Atomic orbital electron populations 1.22413 0.94693 1.02864 1.03452 1.19948 0.93171 0.95220 0.78336 0.86518 1.86636 1.77373 1.29421 1.42423 1.22819 1.02239 0.98975 0.95871 1.23273 1.05172 1.02442 0.87703 1.46869 1.31139 1.24345 1.05520 1.21430 0.92237 0.86963 0.99358 1.22943 0.81350 0.85989 0.81538 1.90773 1.68339 1.16856 1.61421 1.86495 1.44762 1.42116 1.53301 1.23787 0.89228 0.98460 0.88039 1.19184 0.92860 0.93297 0.95798 1.20918 1.17698 0.94730 1.23401 0.92260 1.24974 0.97276 0.94834 0.96967 1.69953 1.35846 1.04915 1.42080 0.86510 0.80530 0.78961 0.81192 1.19998 1.21057 1.20024 1.78485 1.04684 0.99553 1.20252 1.75063 1.19288 1.18202 1.00139 0.90509 0.91221 0.92337 0.77622 0.78837 0.83405 0.83949 0.92052 0.91883 0.95213 0.95264 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.51 37.16 0.35 -0.87 16 2 C 0.19 1.61 4.14 -27.88 -0.12 1.49 16 3 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 4 O -0.55 -3.97 12.81 -35.23 -0.45 -4.42 16 5 C -0.06 -0.68 6.45 -82.78 -0.53 -1.21 16 6 C -0.04 -0.35 10.79 -17.05 -0.18 -0.53 16 7 N -0.28 -3.42 3.19 -62.45 -0.20 -3.62 16 8 C 0.12 1.18 7.05 -5.20 -0.04 1.14 16 9 C 0.44 6.92 7.97 36.00 0.29 7.21 16 10 O -0.49 -9.59 15.44 -18.76 -0.29 -9.88 16 11 O -0.35 -6.27 10.22 -39.26 -0.40 -6.67 16 12 C 0.08 1.63 5.40 37.15 0.20 1.83 16 13 C 0.03 0.65 5.35 -27.89 -0.15 0.50 16 14 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 N -0.05 -0.78 12.15 60.35 0.73 -0.05 16 23 N -0.26 -3.81 12.40 33.29 0.41 -3.39 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.38 1.25 8.86 45.56 0.40 1.65 16 28 H 0.19 1.01 7.94 -52.49 -0.42 0.59 16 29 H 0.15 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -35.48 315.78 -4.09 -39.56 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.78 Total: -3.64 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.59 Total: -3.69 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 1.68 Total: -32.13 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.14 Total: -20.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.48 -4.09 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116747258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.096 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds