Wall clock time and date at job start Mon Mar 30 2020 00:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47322 * 2 1 4 4 O 1.42890 * 109.47616 * 239.99246 * 2 1 3 5 5 C 1.50703 * 109.46800 * 119.99607 * 2 1 3 6 6 C 1.35347 * 126.75466 * 125.00508 * 5 2 1 7 7 N 1.35308 * 106.17795 * 179.97438 * 6 5 2 8 8 C 1.46499 * 125.87035 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47547 * 124.99630 * 8 7 6 10 10 O 1.20833 * 119.99747 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00262 * 179.72203 * 9 8 7 12 12 C 1.45202 * 116.99836 * 180.27336 * 11 9 8 13 13 C 1.52994 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47473 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99561 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00335 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46972 * 60.00315 * 18 16 14 20 20 H 1.48502 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47336 * 299.99813 * 18 16 14 22 22 N 1.28720 * 108.26557 * 0.26208 * 7 6 5 23 23 N 1.28638 * 110.17202 * 359.55869 * 22 7 6 24 24 H 1.08995 * 109.47398 * 300.00868 * 1 2 3 25 25 H 1.09007 * 109.46845 * 60.00554 * 1 2 3 26 26 H 1.09002 * 109.47322 * 180.02562 * 1 2 3 27 27 H 0.96702 * 114.00407 * 300.00406 * 4 2 1 28 28 H 1.07995 * 126.90678 * 359.97438 * 6 5 2 29 29 H 1.09004 * 109.47039 * 4.99814 * 8 7 6 30 30 H 1.09000 * 109.47206 * 245.00357 * 8 7 6 31 31 H 1.08998 * 109.47630 * 300.00638 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.01042 * 12 11 9 33 33 H 1.08997 * 109.47687 * 300.00275 * 13 12 11 34 34 H 1.09002 * 109.47633 * 60.00402 * 13 12 11 35 35 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0323 -0.7104 1.2306 6 6 2.8887 -1.7577 1.2683 7 7 3.0541 -2.0626 2.5761 8 6 3.8987 -3.1352 3.1074 9 6 4.8708 -2.5615 4.1058 10 8 4.8590 -1.3780 4.3491 11 8 5.7457 -3.3662 4.7294 12 6 6.6480 -2.7457 5.6829 13 6 7.5638 -3.8122 6.2868 14 6 8.4999 -3.1685 7.2769 15 1 8.4467 -2.1050 7.4577 16 6 9.4243 -3.9371 7.9520 17 7 9.4895 -5.2319 7.7315 18 14 10.5851 -3.1389 9.1787 19 1 9.7964 -2.4946 10.2596 20 1 11.4740 -4.1740 9.7650 21 1 11.4074 -2.1136 8.4874 22 7 2.3371 -1.2520 3.2731 23 7 1.7198 -0.4293 2.5006 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.7211 -1.5953 -1.2327 28 1 3.3477 -2.2509 0.4242 29 1 4.4497 -3.6020 2.2908 30 1 3.2731 -3.8816 3.5969 31 1 7.2520 -1.9937 5.1754 32 1 6.0691 -2.2722 6.4759 33 1 6.9601 -4.5646 6.7943 34 1 8.1428 -4.2855 5.4937 35 1 10.1397 -5.7727 8.2067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116747258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:56 Heat of formation + Delta-G solvation = -69.974362 kcal Electronic energy + Delta-G solvation = -19619.173501 eV Core-core repulsion = 16232.750588 eV Total energy + Delta-G solvation = -3386.422912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.40761 -41.56736 -38.55389 -37.92929 -35.73766 -35.48453 -32.74709 -32.45835 -30.96350 -29.85891 -27.06538 -25.12364 -24.09404 -22.94338 -22.50680 -21.68779 -19.30310 -18.93228 -18.38773 -17.96249 -17.53258 -17.21330 -16.78411 -16.45275 -16.31429 -15.58761 -15.45519 -15.06470 -14.44691 -14.39332 -14.07199 -13.52471 -13.17608 -13.11845 -13.04841 -12.82733 -12.64838 -12.62675 -12.20122 -12.05954 -11.94761 -11.70218 -11.56890 -11.50730 -11.36199 -11.11302 -10.63073 -10.21660 -8.29793 -6.42642 0.40205 0.93877 1.03030 1.40017 1.42487 1.42571 1.50582 1.74604 2.37419 3.04951 3.11526 3.31086 3.48107 3.71431 3.83148 3.97899 4.07280 4.16008 4.18518 4.26140 4.39144 4.62961 4.65673 4.80996 5.02535 5.12998 5.16163 5.30171 5.43089 5.44062 5.44315 5.70330 6.03682 6.50601 6.70423 6.80580 7.27153 7.40963 8.82264 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.058079 B = 0.002778 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.990008 B =10075.705331 C =10202.811647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.201 3.799 3 H 0.109 0.891 4 O -0.558 6.558 5 C -0.075 4.075 6 C -0.016 4.016 7 N -0.288 5.288 8 C 0.131 3.869 9 C 0.441 3.559 10 O -0.532 6.532 11 O -0.351 6.351 12 C 0.093 3.907 13 C 0.032 3.968 14 C -0.554 4.554 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.267 1.267 22 N -0.107 5.107 23 N -0.291 5.291 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.394 0.606 28 H 0.243 0.757 29 H 0.204 0.796 30 H 0.175 0.825 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.010 0.990 34 H 0.013 0.987 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.542 2.260 -18.669 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.140 3.860 3 H 0.126 0.874 4 O -0.364 6.364 5 C -0.213 4.213 6 C -0.165 4.165 7 N -0.082 5.082 8 C 0.010 3.990 9 C 0.283 3.717 10 O -0.420 6.420 11 O -0.267 6.267 12 C 0.020 3.980 13 C -0.005 4.005 14 C -0.592 4.592 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.192 1.192 22 N -0.086 5.086 23 N -0.159 5.159 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.245 0.755 28 H 0.259 0.741 29 H 0.221 0.779 30 H 0.192 0.808 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.031 0.969 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.559 3.403 -17.192 23.436 hybrid contribution 0.940 -0.439 0.354 1.096 sum -14.619 2.964 -16.839 22.495 Atomic orbital electron populations 1.22347 0.93850 1.03316 1.03253 1.19857 0.93697 0.94697 0.77751 0.87367 1.86615 1.77460 1.30970 1.41396 1.23381 1.02720 0.99744 0.95504 1.24043 1.03482 1.01217 0.87804 1.47093 1.30636 1.24211 1.06286 1.21890 0.91308 0.86153 0.99675 1.24130 0.80825 0.85379 0.81351 1.90766 1.69423 1.18907 1.62952 1.86469 1.45040 1.42238 1.52957 1.23195 0.89321 0.96785 0.88668 1.18974 0.92890 0.93632 0.94987 1.21334 1.18521 0.95105 1.24215 0.92055 1.25893 0.98910 0.95360 0.98817 1.70060 1.36718 1.06287 1.43184 0.85433 0.78338 0.78195 0.78705 1.19303 1.20307 1.19156 1.78441 1.06977 1.01486 1.21674 1.74984 1.20132 1.18848 1.01892 0.92146 0.89908 0.91573 0.75520 0.74096 0.77927 0.80822 0.92230 0.92544 0.97153 0.96900 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.51 71.98 0.68 -1.44 16 2 C 0.20 3.01 4.14 29.85 0.12 3.13 16 3 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 4 O -0.56 -6.27 12.81 -148.98 -1.91 -8.18 16 5 C -0.07 -1.54 6.45 41.60 0.27 -1.27 16 6 C -0.02 -0.24 10.79 83.49 0.90 0.66 16 7 N -0.29 -6.26 3.19 -351.48 -1.12 -7.38 16 8 C 0.13 2.07 7.05 85.63 0.60 2.68 16 9 C 0.44 13.26 7.97 71.23 0.57 13.83 16 10 O -0.53 -20.99 15.44 21.94 0.34 -20.65 16 11 O -0.35 -12.32 10.22 -51.41 -0.53 -12.84 16 12 C 0.09 4.02 5.40 71.98 0.39 4.41 16 13 C 0.03 1.67 5.35 29.85 0.16 1.83 16 14 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.92 -54.00 13.29 21.45 0.28 -53.71 16 18 Si 0.97 43.12 29.54 68.60 2.03 45.15 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 N -0.11 -3.32 12.15 37.02 0.45 -2.87 16 23 N -0.29 -8.59 12.40 -48.60 -0.60 -9.19 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.39 1.10 8.86 -74.06 -0.66 0.44 16 28 H 0.24 1.15 7.94 -2.91 -0.02 1.13 16 29 H 0.20 0.97 8.07 -2.38 -0.02 0.96 16 30 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 32 H 0.06 2.48 8.13 -2.38 -0.02 2.46 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -80.33 315.78 3.79 -76.54 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 0.45 Total: -1.02 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.39 Total: -5.84 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -0.99 Total: -73.15 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -2.10 Total: -41.68 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -80.33 3.79 -76.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116747258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.563 kcal (2) G-P(sol) polarization free energy of solvation -80.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds