Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38034 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41058 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99806 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99868 * 0.02686 * 7 6 5 10 10 C 1.46499 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47056 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99761 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00345 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99569 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00456 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46701 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47219 * 119.99988 * 17 15 13 20 20 H 1.48499 * 109.46891 * 240.00103 * 17 15 13 21 21 C 1.35909 * 107.17858 * 359.97438 * 6 5 4 22 22 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 23 23 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 26 26 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 27 27 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 28 28 H 0.96998 * 119.99677 * 359.97438 * 9 7 6 29 29 H 1.09002 * 109.46933 * 299.99386 * 10 9 7 30 30 H 1.08994 * 109.47243 * 59.99742 * 10 9 7 31 31 H 1.08998 * 109.47117 * 299.99877 * 11 10 9 32 32 H 1.09005 * 109.46953 * 59.99577 * 11 10 9 33 33 H 0.97002 * 119.99870 * 0.02562 * 12 11 10 34 34 H 0.97000 * 120.00470 * 180.02562 * 16 15 13 35 35 H 1.07998 * 126.46073 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0357 4.7846 -0.0001 10 6 7.0886 5.8032 -0.0008 11 6 6.4521 7.1945 -0.0007 12 7 7.5050 8.2132 -0.0008 13 6 7.1724 9.5415 -0.0013 14 1 6.1341 9.8383 -0.0010 15 6 8.1701 10.5067 -0.0020 16 7 9.4357 10.1451 -0.0027 17 14 7.7166 12.3189 -0.0018 18 1 6.2382 12.4590 -0.0015 19 1 8.2762 12.9691 1.2102 20 1 8.2747 12.9689 -1.2147 21 6 5.4846 1.1054 -0.0003 22 8 4.2630 0.5428 0.0049 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.1031 5.0510 0.0001 29 1 7.7078 5.6864 0.8886 30 1 7.7062 5.6867 -0.8913 31 1 5.8332 7.3111 -0.8903 32 1 5.8342 7.3113 0.8897 33 1 8.4377 7.9466 -0.0014 34 1 10.1328 10.8196 -0.0029 35 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130844608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = -34.003828 kcal Electronic energy + Delta-G solvation = -19304.796750 eV Core-core repulsion = 15919.933637 eV Total energy + Delta-G solvation = -3384.863113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.72134 -39.58166 -39.15634 -35.68556 -35.20961 -33.77661 -32.43853 -31.17973 -29.84043 -27.84204 -24.79049 -24.05436 -23.24650 -22.45999 -21.39354 -20.63410 -19.21362 -17.90231 -17.46006 -17.18040 -16.61599 -16.03525 -15.55926 -15.34119 -15.24418 -14.51749 -14.00984 -13.75225 -13.58160 -13.42083 -13.29023 -13.12909 -12.82082 -12.30350 -11.86300 -11.46394 -11.15203 -11.09983 -11.02502 -10.79646 -10.78887 -10.25115 -10.02340 -9.72804 -9.06697 -8.92267 -8.76799 -6.95490 -5.76271 -3.06651 0.88207 1.56255 1.82314 2.38619 3.16165 3.26630 3.45108 3.50561 3.53029 4.24062 4.25336 4.26279 4.57760 4.60176 4.63415 4.83036 5.12207 5.16479 5.21990 5.45095 5.49218 5.53959 5.60780 5.80524 6.00226 6.17397 6.32139 6.49450 6.75532 6.76392 7.20239 7.64467 7.70779 8.21976 8.41458 9.52849 10.07584 10.42643 11.46454 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002803 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.156240 B = 9987.287818 C =10786.393077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.245 6.245 4 C 0.382 3.618 5 N -0.454 5.454 6 C -0.042 4.042 7 C 0.599 3.401 8 O -0.536 6.536 9 N -0.701 5.701 10 C 0.110 3.890 11 C 0.144 3.856 12 N -0.730 5.730 13 C -0.241 4.241 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.931 5.931 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.000 4.000 22 O -0.227 6.227 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -24.760 0.003 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.153 6.153 4 C 0.136 3.864 5 N -0.200 5.200 6 C -0.161 4.161 7 C 0.383 3.617 8 O -0.413 6.413 9 N -0.352 5.352 10 C -0.014 4.014 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.372 4.372 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.072 4.072 22 O -0.118 6.118 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.897 -24.154 0.006 28.916 hybrid contribution -0.045 0.183 0.001 0.188 sum -15.942 -23.972 0.007 28.789 Atomic orbital electron populations 1.21814 0.91189 1.03654 1.04307 1.23063 0.96897 0.79357 1.03051 1.86395 1.08926 1.30803 1.89190 1.23289 0.83474 0.81581 0.98039 1.71133 1.03935 1.21502 1.23436 1.21761 0.90177 0.94114 1.10039 1.16618 0.86070 0.81805 0.77176 1.90848 1.17885 1.81432 1.51164 1.45761 1.11634 1.05017 1.72741 1.21672 0.89783 0.87047 1.02851 1.20766 0.92615 0.86365 0.98707 1.42193 1.04027 1.01543 1.89714 1.19251 0.92630 0.82300 1.43039 0.90930 1.24783 0.95217 0.98178 1.02801 1.69678 0.98345 1.32473 1.57467 0.86072 0.77469 0.85172 0.77190 1.20493 1.21805 1.21811 1.24974 0.85797 0.92878 1.03555 1.84388 1.16265 1.39184 1.71975 0.90898 0.89441 0.90906 0.90781 0.90783 0.75457 0.90884 0.90894 0.95569 0.95570 0.78003 0.93450 0.74683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 10.28 37.16 0.38 -0.15 16 2 C 0.05 0.27 6.38 37.16 0.24 0.51 16 3 O -0.24 -2.32 10.19 -40.97 -0.42 -2.74 16 4 C 0.38 4.30 8.98 52.22 0.47 4.77 16 5 N -0.45 -6.10 11.10 -11.71 -0.13 -6.23 16 6 C -0.04 -0.55 6.99 -82.98 -0.58 -1.13 16 7 C 0.60 9.39 7.81 -12.54 -0.10 9.29 16 8 O -0.54 -9.69 16.89 5.26 0.09 -9.60 16 9 N -0.70 -10.92 5.55 -61.40 -0.34 -11.26 16 10 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 11 C 0.14 2.93 6.37 -4.04 -0.03 2.90 16 12 N -0.73 -18.91 5.60 -59.91 -0.34 -19.25 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 17 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 C 0.00 0.00 11.93 29.90 0.36 0.36 16 22 O -0.23 -2.20 10.20 -17.77 -0.18 -2.38 16 23 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.41 5.83 8.20 -40.82 -0.33 5.49 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.39 10.50 7.67 -40.82 -0.31 10.19 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.24 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -34.22 316.83 -4.79 -39.01 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.42 Total: 6.94 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 0.47 Total: 10.99 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.08 Total: -64.60 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.51 Total: -14.72 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.22 -4.79 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130844608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.010 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds