Wall clock time and date at job start Mon Mar 30 2020 00:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35349 * 117.00239 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44630 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38034 * 179.97438 * 5 4 3 7 7 C 1.47373 * 126.41058 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99806 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99868 * 0.02686 * 7 6 5 10 10 C 1.46499 * 119.99683 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47056 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99761 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00345 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99569 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00456 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99966 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46701 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47219 * 119.99988 * 17 15 13 20 20 H 1.48499 * 109.46891 * 240.00103 * 17 15 13 21 21 C 1.35909 * 107.17858 * 359.97438 * 6 5 4 22 22 O 1.34205 * 125.44581 * 359.68611 * 4 3 2 23 23 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 26 26 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 27 27 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 28 28 H 0.96998 * 119.99677 * 359.97438 * 9 7 6 29 29 H 1.09002 * 109.46933 * 299.99386 * 10 9 7 30 30 H 1.08994 * 109.47243 * 59.99742 * 10 9 7 31 31 H 1.08998 * 109.47117 * 299.99877 * 11 10 9 32 32 H 1.09005 * 109.46953 * 59.99577 * 11 10 9 33 33 H 0.97002 * 119.99870 * 0.02562 * 12 11 10 34 34 H 0.97000 * 120.00470 * 180.02562 * 16 15 13 35 35 H 1.07998 * 126.46073 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0001 6 6 5.3039 2.4524 -0.0004 7 6 6.3630 3.4771 -0.0006 8 8 7.5324 3.1429 -0.0012 9 7 6.0357 4.7846 -0.0001 10 6 7.0886 5.8032 -0.0008 11 6 6.4521 7.1945 -0.0007 12 7 7.5050 8.2132 -0.0008 13 6 7.1724 9.5415 -0.0013 14 1 6.1341 9.8383 -0.0010 15 6 8.1701 10.5067 -0.0020 16 7 9.4357 10.1451 -0.0027 17 14 7.7166 12.3189 -0.0018 18 1 6.2382 12.4590 -0.0015 19 1 8.2762 12.9691 1.2102 20 1 8.2747 12.9689 -1.2147 21 6 5.4846 1.1054 -0.0003 22 8 4.2630 0.5428 0.0049 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.1031 5.0510 0.0001 29 1 7.7078 5.6864 0.8886 30 1 7.7062 5.6867 -0.8913 31 1 5.8332 7.3111 -0.8903 32 1 5.8342 7.3113 0.8897 33 1 8.4377 7.9466 -0.0014 34 1 10.1328 10.8196 -0.0029 35 1 6.4308 0.5848 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130844608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:35 Heat of formation + Delta-G solvation = -63.525571 kcal Electronic energy + Delta-G solvation = -19306.076909 eV Core-core repulsion = 15919.933637 eV Total energy + Delta-G solvation = -3386.143272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.57347 -40.72550 -39.93268 -37.35751 -36.13413 -35.48562 -33.17584 -32.84039 -30.74962 -29.49905 -26.19980 -24.94997 -24.44474 -23.45417 -22.89780 -21.66703 -20.16791 -19.28710 -18.66767 -18.43899 -17.41752 -16.99924 -16.80740 -16.49435 -16.42546 -16.06713 -15.39029 -15.20931 -15.03878 -14.76133 -14.38183 -13.92538 -13.56369 -13.15629 -13.05169 -12.72261 -12.66988 -12.53253 -12.52561 -12.04996 -11.94169 -11.87656 -11.79677 -11.45977 -11.00834 -10.27287 -9.77502 -9.06728 -7.96714 -5.28138 -0.00886 0.81846 0.87452 1.48933 1.50466 1.60419 1.62556 1.98774 2.13400 2.57531 3.26952 3.37356 3.69988 3.93667 3.94910 3.96856 4.05036 4.17152 4.21045 4.27266 4.37440 4.55505 4.64276 4.84056 4.87654 4.99060 5.11353 5.19435 5.27715 5.49183 5.62632 6.23794 6.24393 6.53115 6.99529 7.30734 8.01378 8.25704 9.27047 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002803 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.156240 B = 9987.287818 C =10786.393077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.257 6.257 4 C 0.387 3.613 5 N -0.485 5.485 6 C -0.076 4.076 7 C 0.602 3.398 8 O -0.565 6.565 9 N -0.698 5.698 10 C 0.127 3.873 11 C 0.148 3.852 12 N -0.745 5.745 13 C -0.248 4.248 14 H 0.081 0.919 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.980 3.020 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.035 3.965 22 O -0.214 6.214 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.417 0.583 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.253 0.747 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.774 -26.069 0.004 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.165 6.165 4 C 0.140 3.860 5 N -0.231 5.231 6 C -0.194 4.194 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.348 5.348 10 C 0.003 3.997 11 C 0.021 3.979 12 N -0.389 5.389 13 C -0.379 4.379 14 H 0.099 0.901 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.038 4.038 22 O -0.104 6.104 23 H 0.086 0.914 24 H 0.130 0.870 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.208 0.792 34 H 0.062 0.938 35 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -17.662 -25.494 0.007 31.014 hybrid contribution 0.371 0.428 0.001 0.566 sum -17.292 -25.066 0.008 30.452 Atomic orbital electron populations 1.21866 0.89874 1.05083 1.03834 1.23455 0.97896 0.77704 1.04233 1.86429 1.07824 1.33382 1.88895 1.23295 0.84208 0.81376 0.97152 1.71014 1.04226 1.22978 1.24889 1.21400 0.89757 0.94565 1.13664 1.16876 0.86332 0.81918 0.76038 1.90826 1.19225 1.81853 1.52557 1.45617 1.11373 1.04847 1.72998 1.21276 0.89934 0.86470 1.01992 1.20827 0.91529 0.86372 0.99178 1.42395 1.04681 1.02035 1.89758 1.19674 0.93024 0.83537 1.41692 0.90097 1.25674 0.95204 1.02715 1.03325 1.69838 0.99343 1.33663 1.59145 0.84984 0.77935 0.79576 0.76683 1.18786 1.21923 1.21934 1.25595 0.86695 0.91914 0.99595 1.84439 1.15959 1.38510 1.71533 0.91366 0.86996 0.91377 0.89588 0.89598 0.74609 0.91800 0.91810 0.94695 0.94698 0.79236 0.93844 0.71484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 71.98 0.74 -0.01 16 2 C 0.04 0.35 6.38 71.98 0.46 0.81 16 3 O -0.26 -4.50 10.19 -64.17 -0.65 -5.16 16 4 C 0.39 8.10 8.98 130.43 1.17 9.27 16 5 N -0.48 -12.60 11.10 -419.39 -4.65 -17.25 16 6 C -0.08 -1.93 6.99 40.31 0.28 -1.64 16 7 C 0.60 18.64 7.81 86.65 0.68 19.32 16 8 O -0.56 -20.28 16.89 -4.10 -0.07 -20.35 16 9 N -0.70 -21.59 5.55 -466.41 -2.59 -24.18 16 10 C 0.13 4.59 5.79 86.38 0.50 5.09 16 11 C 0.15 5.99 6.37 86.38 0.55 6.54 16 12 N -0.75 -38.87 5.60 -343.46 -1.92 -40.80 16 13 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 14 H 0.08 4.35 7.83 -2.92 -0.02 4.33 16 15 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 16 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 17 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 C 0.03 0.62 11.93 67.28 0.80 1.42 16 22 O -0.21 -3.61 10.20 18.83 0.19 -3.42 16 23 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.42 11.70 8.20 -92.71 -0.76 10.94 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.38 20.89 7.67 -92.71 -0.71 20.18 16 34 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.27 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.15 316.83 -1.24 -74.39 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.34 Total: 24.71 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 6.49 Total: 23.59 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -8.88 Total: -142.28 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.53 Total: -28.93 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.15 -1.24 -74.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130844608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.862 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds