Wall clock time and date at job start Mon Mar 30 2020 00:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47601 * 2 1 4 4 C 1.35733 * 117.00448 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78647 * 179.97438 * 4 3 2 6 6 C 1.36662 * 103.80958 * 179.97438 * 5 4 3 7 7 C 1.47542 * 126.88018 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99892 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00165 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27934 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00505 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00469 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99655 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 O 1.34662 * 106.24023 * 0.23259 * 6 5 4 22 22 N 1.20870 * 111.63611 * 359.58618 * 21 6 5 23 23 H 1.08994 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47155 * 300.00183 * 1 2 3 25 25 H 1.09001 * 109.46863 * 60.00271 * 1 2 3 26 26 H 1.09006 * 109.47141 * 239.99340 * 2 1 3 27 27 H 1.09001 * 109.46863 * 119.99729 * 2 1 3 28 28 H 1.08000 * 128.09276 * 359.97438 * 5 4 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 30 30 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 32 32 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 33 33 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 34 34 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 35 35 H 0.96995 * 120.00148 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7626 0.0001 6 6 5.3626 2.3986 0.0016 7 6 6.5304 3.3002 0.0013 8 8 6.3681 4.5052 0.0002 9 7 7.7771 2.7882 0.0024 10 6 8.9367 3.6836 0.0083 11 6 10.2219 2.8536 0.0153 12 7 11.3815 3.7488 0.0206 13 6 12.6482 3.2286 0.0268 14 1 12.7924 2.1583 0.0281 15 6 13.7469 4.0770 0.0313 16 7 13.5712 5.3814 0.0291 17 14 15.4748 3.3674 0.0404 18 1 15.9394 3.1779 -1.3573 19 1 16.3899 4.3016 0.7439 20 1 15.4687 2.0585 0.7417 21 8 5.3812 1.0521 -0.0026 22 7 4.2639 0.5909 0.0019 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.6294 3.7593 -0.0010 29 1 7.9066 1.8269 0.0037 30 1 8.9149 4.3122 -0.8820 31 1 8.9056 4.3125 0.8980 32 1 10.2437 2.2250 0.9056 33 1 10.2531 2.2245 -0.8743 34 1 11.2519 4.7101 0.0190 35 1 14.3389 5.9742 0.0327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131413686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:33 Heat of formation + Delta-G solvation = 4.661187 kcal Electronic energy + Delta-G solvation = -19268.982257 eV Core-core repulsion = 15885.795785 eV Total energy + Delta-G solvation = -3383.186472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.25432 -39.70937 -39.34583 -35.89752 -34.09627 -33.74293 -32.34093 -31.58139 -31.12217 -27.99057 -24.98676 -23.91012 -23.62573 -22.78049 -21.56088 -20.93730 -19.14879 -18.25406 -17.33381 -17.23252 -16.34915 -16.14393 -15.95430 -15.43610 -14.89783 -14.59067 -14.13593 -13.88009 -13.77898 -13.50494 -13.23126 -13.14350 -12.92032 -12.34051 -11.65311 -11.58295 -11.57182 -11.16471 -10.88612 -10.82898 -10.49021 -10.13822 -10.11758 -9.78817 -9.65075 -9.15879 -8.91987 -7.02253 -5.81584 -3.12593 0.51485 1.79932 2.23941 2.35999 2.84302 3.19161 3.41808 3.46965 3.48744 3.77531 4.37162 4.44140 4.52731 4.55749 4.68382 4.76840 4.88036 5.15316 5.28541 5.37551 5.42682 5.46823 5.53956 5.68973 5.87175 6.02146 6.29415 6.59600 6.61770 6.64060 7.23923 7.64619 7.74561 7.90637 8.35791 9.47359 10.01019 10.35645 11.40867 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.063171 B = 0.002562 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.135588 B =10925.864661 C =11337.928752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.157 4.157 6 C -0.051 4.051 7 C 0.601 3.399 8 O -0.508 6.508 9 N -0.703 5.703 10 C 0.109 3.891 11 C 0.143 3.857 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 O 0.117 5.883 22 N -0.391 5.391 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.191 0.809 29 H 0.408 0.592 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.386 0.614 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.358 -10.308 -0.054 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.179 4.179 6 C -0.117 4.117 7 C 0.383 3.617 8 O -0.384 6.384 9 N -0.353 5.353 10 C -0.014 4.014 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 O 0.051 5.949 22 N -0.115 5.115 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.208 0.792 29 H 0.243 0.757 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.220 0.780 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.596 -10.655 -0.045 26.805 hybrid contribution 0.750 0.033 -0.004 0.751 sum -23.846 -10.622 -0.049 26.105 Atomic orbital electron populations 1.21800 0.92063 1.03284 1.03746 1.22856 0.95983 0.80447 1.02539 1.86222 1.12924 1.30374 1.89266 1.21840 0.85879 0.90470 1.00853 1.22183 0.90080 0.99309 1.06366 1.24158 0.96679 0.84244 1.06662 1.16441 0.81051 0.86057 0.78170 1.90908 1.84786 1.12779 1.49886 1.45840 1.05159 1.11585 1.72746 1.21757 0.83540 0.92865 1.03265 1.20772 0.85701 0.93222 0.98806 1.42171 1.00378 1.05127 1.89778 1.19187 0.82864 0.91987 1.43524 0.90957 1.24785 0.98084 0.95354 1.02607 1.69660 1.29707 1.01333 1.57118 0.86141 0.84351 0.77814 0.77552 1.21618 1.21695 1.20684 1.84955 1.22845 1.18618 1.68459 1.74002 0.90434 1.22112 1.24950 0.89885 0.91291 0.91285 0.91463 0.91466 0.79221 0.75677 0.90503 0.90511 0.95492 0.95497 0.77960 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.42 6.38 37.16 0.24 0.66 16 3 O -0.28 -2.88 10.21 -18.91 -0.19 -3.07 16 4 C 0.21 2.35 8.00 -16.72 -0.13 2.21 16 5 C -0.16 -1.73 10.97 -38.77 -0.43 -2.15 16 6 C -0.05 -0.60 7.29 -36.36 -0.26 -0.86 16 7 C 0.60 8.14 7.82 -12.47 -0.10 8.04 16 8 O -0.51 -8.49 16.91 5.29 0.09 -8.40 16 9 N -0.70 -8.99 5.55 -61.35 -0.34 -9.33 16 10 C 0.11 1.72 5.79 -4.04 -0.02 1.70 16 11 C 0.14 2.66 6.37 -4.04 -0.03 2.64 16 12 N -0.73 -17.97 5.60 -59.91 -0.34 -18.31 16 13 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 17 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 O 0.12 1.34 11.03 15.50 0.17 1.51 16 22 N -0.39 -4.63 11.50 30.47 0.35 -4.28 16 23 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.41 4.23 8.30 -40.82 -0.34 3.89 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.39 10.05 7.67 -40.82 -0.31 9.74 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -32.05 316.56 -4.81 -36.86 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.43 Total: 5.76 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.60 Total: 4.57 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.40 Total: -59.03 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.05 -4.81 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131413686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.521 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds