Wall clock time and date at job start Mon Mar 30 2020 00:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47601 * 2 1 4 4 C 1.35733 * 117.00448 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78647 * 179.97438 * 4 3 2 6 6 C 1.36662 * 103.80958 * 179.97438 * 5 4 3 7 7 C 1.47542 * 126.88018 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99892 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00165 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27934 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00505 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00469 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46896 * 89.99850 * 17 15 13 19 19 H 1.48494 * 109.47103 * 209.99655 * 17 15 13 20 20 H 1.48501 * 109.47275 * 329.99811 * 17 15 13 21 21 O 1.34662 * 106.24023 * 0.23259 * 6 5 4 22 22 N 1.20870 * 111.63611 * 359.58618 * 21 6 5 23 23 H 1.08994 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47155 * 300.00183 * 1 2 3 25 25 H 1.09001 * 109.46863 * 60.00271 * 1 2 3 26 26 H 1.09006 * 109.47141 * 239.99340 * 2 1 3 27 27 H 1.09001 * 109.46863 * 119.99729 * 2 1 3 28 28 H 1.08000 * 128.09276 * 359.97438 * 5 4 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 30 30 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 32 32 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 33 33 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 34 34 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 35 35 H 0.96995 * 120.00148 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7626 0.0001 6 6 5.3626 2.3986 0.0016 7 6 6.5304 3.3002 0.0013 8 8 6.3681 4.5052 0.0002 9 7 7.7771 2.7882 0.0024 10 6 8.9367 3.6836 0.0083 11 6 10.2219 2.8536 0.0153 12 7 11.3815 3.7488 0.0206 13 6 12.6482 3.2286 0.0268 14 1 12.7924 2.1583 0.0281 15 6 13.7469 4.0770 0.0313 16 7 13.5712 5.3814 0.0291 17 14 15.4748 3.3674 0.0404 18 1 15.9394 3.1779 -1.3573 19 1 16.3899 4.3016 0.7439 20 1 15.4687 2.0585 0.7417 21 8 5.3812 1.0521 -0.0026 22 7 4.2639 0.5909 0.0019 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.6294 3.7593 -0.0010 29 1 7.9066 1.8269 0.0037 30 1 8.9149 4.3122 -0.8820 31 1 8.9056 4.3125 0.8980 32 1 10.2437 2.2250 0.9056 33 1 10.2531 2.2245 -0.8743 34 1 11.2519 4.7101 0.0190 35 1 14.3389 5.9742 0.0327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131413686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:33 Heat of formation + Delta-G solvation = -20.727125 kcal Electronic energy + Delta-G solvation = -19270.083177 eV Core-core repulsion = 15885.795785 eV Total energy + Delta-G solvation = -3384.287392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.15619 -40.86474 -40.10695 -37.39896 -35.65809 -34.62101 -33.51160 -32.81864 -32.14479 -29.58211 -26.26893 -25.12006 -24.55931 -23.89331 -23.00041 -21.84599 -20.22557 -19.27142 -19.14974 -18.05766 -17.28789 -17.10194 -17.05582 -16.64531 -16.51152 -15.70467 -15.37883 -15.22735 -15.06203 -14.83425 -14.55742 -14.09132 -13.55045 -13.12057 -13.03840 -12.98455 -12.66716 -12.52346 -12.39118 -12.14238 -12.06198 -11.87541 -11.60308 -11.07948 -10.97002 -10.48054 -10.29531 -9.03276 -7.94549 -5.25255 -0.43820 0.91206 1.33405 1.46959 1.51264 1.52664 1.61144 1.78107 2.16302 2.59628 2.91811 3.39987 3.55202 3.69846 3.89931 3.92517 3.99661 4.07583 4.19023 4.24878 4.26875 4.53703 4.61841 4.78747 4.85660 4.94928 5.15612 5.16132 5.22503 5.51837 5.84717 6.17449 6.26636 6.79594 6.89114 7.33382 8.05511 8.27815 9.28870 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.063171 B = 0.002562 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.135588 B =10925.864661 C =11337.928752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.204 3.796 5 C -0.150 4.150 6 C -0.054 4.054 7 C 0.609 3.391 8 O -0.542 6.542 9 N -0.691 5.691 10 C 0.125 3.875 11 C 0.145 3.855 12 N -0.746 5.746 13 C -0.246 4.246 14 H 0.083 0.917 15 C -0.077 4.077 16 N -0.969 5.969 17 Si 0.977 3.023 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.267 1.267 21 O 0.121 5.879 22 N -0.398 5.398 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.204 0.796 29 H 0.422 0.578 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.376 0.624 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.319 -12.053 -0.041 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.195 6.195 4 C 0.007 3.993 5 C -0.173 4.173 6 C -0.120 4.120 7 C 0.392 3.608 8 O -0.419 6.419 9 N -0.342 5.342 10 C 0.002 3.998 11 C 0.018 3.982 12 N -0.390 5.390 13 C -0.378 4.378 14 H 0.101 0.899 15 C -0.270 4.270 16 N -0.619 5.619 17 Si 0.806 3.194 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.191 1.191 21 O 0.055 5.945 22 N -0.122 5.122 23 H 0.122 0.878 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.222 0.778 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.207 0.793 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.600 -12.481 -0.033 28.481 hybrid contribution 0.910 0.484 -0.010 1.030 sum -24.691 -11.998 -0.043 27.451 Atomic orbital electron populations 1.21830 0.90073 1.04683 1.03786 1.23126 0.97552 0.79255 1.02617 1.86241 1.12193 1.32074 1.89038 1.21956 0.86404 0.90379 1.00546 1.22420 0.89806 0.99968 1.05060 1.23724 0.96095 0.84322 1.07894 1.16484 0.81337 0.85762 0.77200 1.90898 1.85310 1.14307 1.51414 1.45608 1.04257 1.11976 1.72407 1.21355 0.83436 0.92566 1.02485 1.20877 0.84877 0.92790 0.99610 1.42393 1.01400 1.05408 1.89784 1.19636 0.84081 0.92511 1.41530 0.89925 1.25641 1.02058 0.95752 1.03510 1.69820 1.30325 1.02610 1.59190 0.85087 0.79502 0.77402 0.77415 1.21394 1.22404 1.19133 1.84952 1.22778 1.18274 1.68535 1.73984 0.90632 1.22357 1.25229 0.87787 0.91237 0.91228 0.91376 0.91385 0.77848 0.74013 0.91395 0.91400 0.94237 0.94237 0.79260 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 2 C 0.05 0.66 6.38 71.98 0.46 1.12 16 3 O -0.29 -5.52 10.21 -90.57 -0.92 -6.44 16 4 C 0.20 4.34 8.00 85.78 0.69 5.03 16 5 C -0.15 -3.09 10.97 22.80 0.25 -2.84 16 6 C -0.05 -1.19 7.29 24.36 0.18 -1.02 16 7 C 0.61 15.86 7.82 86.70 0.68 16.54 16 8 O -0.54 -17.83 16.91 -3.98 -0.07 -17.89 16 9 N -0.69 -16.72 5.55 -466.28 -2.59 -19.31 16 10 C 0.13 3.87 5.79 86.38 0.50 4.37 16 11 C 0.15 5.20 6.37 86.38 0.55 5.75 16 12 N -0.75 -36.54 5.60 -343.45 -1.92 -38.46 16 13 C -0.25 -13.30 9.99 84.03 0.84 -12.46 16 14 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 15 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 16 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 17 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 O 0.12 2.58 11.03 65.65 0.72 3.30 16 22 N -0.40 -8.84 11.50 -172.02 -1.98 -10.82 16 23 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.42 7.90 8.30 -92.71 -0.77 7.13 16 30 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.38 19.78 7.67 -92.71 -0.71 19.07 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -67.42 316.56 0.55 -66.88 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.35 Total: 21.86 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.35 Total: 12.15 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.21 Total: -127.10 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.27 Total: -21.03 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.42 0.55 -66.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131413686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.150 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds