Wall clock time and date at job start Mon Mar 30 2020 00:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99504 * 2 1 4 4 C 1.50706 * 109.46891 * 179.97438 * 3 2 1 5 5 C 1.35311 * 126.66450 * 90.28628 * 4 3 2 6 6 C 1.42271 * 103.92043 * 180.09264 * 5 4 3 7 7 C 1.48334 * 126.93784 * 179.91390 * 6 5 4 8 8 O 1.21503 * 120.00080 * 359.70105 * 7 6 5 9 9 N 1.34777 * 120.00028 * 179.70657 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27546 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 N 1.46502 * 109.47591 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00505 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99628 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99400 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00144 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46850 * 90.00418 * 17 15 13 19 19 H 1.48501 * 109.46793 * 210.00071 * 17 15 13 20 20 H 1.48494 * 109.47271 * 329.99959 * 17 15 13 21 21 N 1.30978 * 106.12479 * 359.64516 * 6 5 4 22 22 O 1.20908 * 111.43902 * 0.22643 * 21 6 5 23 23 H 1.09002 * 109.47048 * 299.99717 * 1 2 3 24 24 H 1.08992 * 109.47420 * 60.00295 * 1 2 3 25 25 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47117 * 60.00197 * 3 2 1 27 27 H 1.08992 * 109.46953 * 300.00164 * 3 2 1 28 28 H 1.07999 * 128.03814 * 359.96473 * 5 4 3 29 29 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 30 30 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 32 32 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 33 33 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 34 34 H 0.97000 * 119.99258 * 359.97438 * 12 11 10 35 35 H 0.97000 * 119.99204 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.3189 1.1281 -1.0844 6 6 5.6262 1.0197 -0.5338 7 6 6.9031 0.9195 -1.2821 8 8 6.8969 0.9199 -2.4971 9 7 8.0701 0.8279 -0.6142 10 6 9.3317 0.7351 -1.3532 11 6 10.4965 0.6493 -0.3650 12 7 11.7581 0.5559 -1.1039 13 6 12.9442 0.4679 -0.4254 14 1 12.9497 0.4679 0.6546 15 6 14.1394 0.3788 -1.1257 16 7 15.2795 0.2948 -0.4734 17 14 14.1297 0.3782 -2.9936 18 1 14.2307 1.7743 -3.4896 19 1 15.2846 -0.4097 -3.4943 20 1 12.8663 -0.2304 -3.4819 21 7 5.4752 1.0320 0.7672 22 8 4.3099 1.1241 1.0759 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 4.0356 1.1550 -2.1262 29 1 8.0751 0.8279 0.3558 30 1 9.3207 -0.1565 -1.9802 31 1 9.4514 1.6186 -1.9802 32 1 10.5075 1.5410 0.2619 33 1 10.3768 -0.2342 0.2620 34 1 11.7530 0.5556 -2.0739 35 1 16.1147 0.2322 -0.9627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134905178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:49 Heat of formation + Delta-G solvation = 3.112262 kcal Electronic energy + Delta-G solvation = -19260.453318 eV Core-core repulsion = 15877.199680 eV Total energy + Delta-G solvation = -3383.253638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.43091 -39.65711 -38.51556 -35.97907 -34.38607 -34.05268 -33.03370 -31.42074 -28.50546 -28.26126 -26.15524 -25.10406 -23.30176 -22.69922 -21.53943 -20.19402 -18.38017 -18.25104 -17.67125 -16.99581 -16.81081 -16.40712 -15.84714 -15.50636 -15.48383 -14.52001 -14.19626 -13.95383 -13.84603 -13.73348 -13.42372 -12.78956 -12.65231 -12.10362 -11.91814 -11.70053 -11.54317 -11.01571 -10.87035 -10.75332 -10.41339 -10.36431 -10.17743 -10.02958 -9.63364 -9.17103 -8.93380 -7.32101 -5.80737 -3.18554 0.74683 1.24901 2.40189 2.79906 3.00518 3.37665 3.41056 3.41958 3.45205 3.68594 4.11632 4.42586 4.56437 4.57064 4.68216 4.78986 4.81555 4.96832 5.06408 5.15337 5.26465 5.41564 5.48372 5.56491 5.60486 5.88637 6.23345 6.40636 6.54398 6.54660 7.28086 7.67065 7.91967 7.97714 8.37042 9.14401 9.86532 10.04701 11.37004 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.057257 B = 0.002700 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.907774 B =10367.186315 C =10702.139687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.145 3.855 4 C -0.042 4.042 5 C -0.153 4.153 6 C -0.024 4.024 7 C 0.596 3.404 8 O -0.523 6.523 9 N -0.704 5.704 10 C 0.107 3.893 11 C 0.148 3.852 12 N -0.752 5.752 13 C -0.249 4.249 14 H 0.092 0.908 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 N -0.321 5.321 22 O 0.133 5.867 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.184 0.816 29 H 0.408 0.592 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.363 0.637 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.300 2.853 1.157 32.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.068 3.932 4 C -0.105 4.105 5 C -0.175 4.175 6 C -0.183 4.183 7 C 0.379 3.621 8 O -0.397 6.397 9 N -0.356 5.356 10 C -0.017 4.017 11 C 0.020 3.980 12 N -0.398 5.398 13 C -0.379 4.379 14 H 0.110 0.890 15 C -0.190 4.190 16 N -0.578 5.578 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.202 1.202 21 N -0.020 5.020 22 O 0.055 5.945 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.201 0.799 29 H 0.243 0.757 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.196 0.804 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.052 2.593 1.441 31.194 hybrid contribution -0.356 0.192 -1.560 1.612 sum -31.408 2.784 -0.119 31.531 Atomic orbital electron populations 1.22832 0.79604 1.03576 1.00485 1.87990 1.20625 1.26221 1.95571 1.20652 0.82984 0.86261 1.03304 1.23916 0.95083 1.05759 0.85749 1.22496 0.89716 1.03738 1.01588 1.23560 0.96970 1.07738 0.90054 1.16812 0.81490 0.77440 0.86359 1.90817 1.86456 1.50076 1.12397 1.45762 1.05816 1.72878 1.11127 1.21723 0.81608 1.02798 0.95544 1.20734 0.84480 0.99504 0.93287 1.42515 1.01885 1.90912 1.04520 1.19008 0.82435 1.43487 0.92950 0.89046 1.24684 0.95124 1.01610 0.97550 1.69705 0.97000 1.56704 1.34418 0.86531 0.77091 0.77878 0.86965 1.20903 1.21564 1.20172 1.74210 0.97255 1.14878 1.15666 1.84794 1.11364 1.65161 1.33225 0.93439 0.93476 0.88976 0.90268 0.89226 0.79866 0.75668 0.90791 0.90791 0.94690 0.94734 0.80360 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.76 10.69 -35.23 -0.38 -3.14 16 3 C 0.15 0.76 6.50 36.01 0.23 0.99 16 4 C -0.04 -0.36 7.10 -35.35 -0.25 -0.62 16 5 C -0.15 -1.56 10.92 -39.08 -0.43 -1.99 16 6 C -0.02 -0.31 7.19 -82.53 -0.59 -0.91 16 7 C 0.60 9.05 7.85 -12.11 -0.10 8.95 16 8 O -0.52 -9.32 16.95 5.36 0.09 -9.23 16 9 N -0.70 -10.24 5.55 -61.09 -0.34 -10.58 16 10 C 0.11 1.76 5.79 -4.04 -0.02 1.74 16 11 C 0.15 2.82 6.37 -4.04 -0.03 2.80 16 12 N -0.75 -18.06 5.41 -59.91 -0.32 -18.38 16 13 C -0.25 -7.12 10.47 -15.06 -0.16 -7.27 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 17 Si 0.89 22.29 27.74 -169.99 -4.71 17.58 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 21 N -0.32 -3.97 11.84 33.29 0.39 -3.58 16 22 O 0.13 1.40 11.18 17.25 0.19 1.60 16 23 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 24 H 0.05 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.41 5.26 8.23 -40.82 -0.34 4.92 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.36 8.53 5.53 -40.82 -0.23 8.30 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -34.90 314.23 -4.27 -39.17 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.38 Total: 5.39 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.32 Total: 5.02 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.51 Total: -61.11 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.90 -4.27 -39.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134905178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.282 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds