Wall clock time and date at job start Mon Mar 30 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00478 * 2 1 4 4 H 1.48503 * 109.46892 * 275.31270 * 3 2 1 5 5 H 1.48499 * 109.46810 * 35.30679 * 3 2 1 6 6 H 1.48498 * 109.47146 * 155.30829 * 3 2 1 7 7 C 1.38816 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00230 * 338.14556 * 7 2 1 9 9 N 1.36938 * 119.99951 * 158.14960 * 7 2 1 10 10 C 1.46498 * 119.99918 * 322.45202 * 9 7 2 11 11 C 1.50707 * 109.47195 * 270.00363 * 10 9 7 12 12 C 1.38234 * 119.99636 * 269.72524 * 11 10 9 13 13 C 1.38238 * 119.99783 * 179.76761 * 12 11 10 14 14 C 1.38234 * 119.99691 * 0.50504 * 13 12 11 15 15 C 1.38232 * 120.00183 * 359.74972 * 14 13 12 16 16 C 1.38227 * 119.99947 * 90.00121 * 11 10 9 17 17 C 1.46494 * 120.00025 * 142.45371 * 9 7 2 18 18 C 1.50695 * 109.47405 * 274.44981 * 17 9 7 19 19 C 1.38603 * 120.79698 * 85.45789 * 18 17 9 20 20 N 1.32331 * 119.10297 * 179.72681 * 19 18 17 21 21 C 1.31791 * 120.82213 * 0.27576 * 20 19 18 22 22 N 1.31804 * 121.75051 * 0.02812 * 21 20 19 23 23 C 1.32327 * 120.82143 * 359.96860 * 22 21 20 24 24 H 0.97001 * 119.99523 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47337 * 29.99981 * 10 9 7 26 26 H 1.08998 * 109.47485 * 150.00053 * 10 9 7 27 27 H 1.08003 * 120.00097 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.00049 * 180.23131 * 13 12 11 29 29 H 1.08002 * 119.99523 * 179.72804 * 14 13 12 30 30 H 1.08005 * 119.99856 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.00310 * 0.02562 * 16 11 10 32 32 H 1.09005 * 109.47415 * 154.45375 * 17 9 7 33 33 H 1.09007 * 109.47392 * 34.45568 * 17 9 7 34 34 H 1.08004 * 120.44841 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.12941 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.45121 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3856 2.1111 -1.3941 5 1 1.5084 2.6176 0.8092 6 1 3.5994 1.4102 0.5849 7 6 2.0102 -1.2022 -0.0005 8 1 1.5284 -2.1041 0.3472 9 7 3.3058 -1.2447 -0.4419 10 6 3.7183 -0.4230 -1.5825 11 6 3.5235 -1.2008 -2.8586 12 6 4.5494 -1.9836 -3.3543 13 6 4.3690 -2.7008 -4.5222 14 6 3.1665 -2.6270 -5.1999 15 6 2.1425 -1.8401 -4.7069 16 6 2.3210 -1.1270 -3.5362 17 6 4.2793 -2.1118 0.2264 18 6 4.8701 -1.3866 1.4078 19 6 4.2345 -1.4005 2.6394 20 7 4.7860 -0.7568 3.6556 21 6 5.9212 -0.1044 3.5057 22 7 6.5505 -0.0644 2.3483 23 6 6.0591 -0.6846 1.2876 24 1 -0.4849 0.8401 0.0004 25 1 3.1147 0.4840 -1.6142 26 1 4.7698 -0.1561 -1.4766 27 1 5.4906 -2.0375 -2.8273 28 1 5.1692 -3.3154 -4.9075 29 1 3.0271 -3.1839 -6.1147 30 1 1.2030 -1.7821 -5.2367 31 1 1.5212 -0.5115 -3.1515 32 1 5.0731 -2.3737 -0.4732 33 1 3.7825 -3.0197 0.5686 34 1 3.3042 -1.9335 2.7692 35 1 6.3472 0.4112 4.3536 36 1 6.5800 -0.6482 0.3422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137669172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:55 Heat of formation + Delta-G solvation = 99.251154 kcal Electronic energy + Delta-G solvation = -20077.912888 eV Core-core repulsion = 17141.970159 eV Total energy + Delta-G solvation = -2935.942729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47787 -38.79956 -36.21496 -33.20533 -32.68532 -31.90885 -30.39009 -30.22710 -26.72281 -25.74430 -24.02870 -23.19092 -22.01271 -21.33103 -20.41640 -17.33456 -17.18915 -16.83827 -16.14072 -15.55530 -14.86639 -14.63633 -14.32585 -14.23869 -13.79729 -13.25221 -13.09920 -12.97324 -12.82494 -12.77431 -12.43723 -12.03945 -11.64553 -11.08609 -10.88646 -10.74264 -10.53655 -10.45325 -10.34226 -10.03643 -9.75745 -9.02318 -8.78039 -8.68902 -8.42806 -8.20763 -7.12877 -6.20125 -3.61586 1.37142 1.55343 1.86097 1.91169 3.15847 3.35043 3.37626 4.16554 4.30073 4.33660 4.54139 4.68809 5.00944 5.14926 5.17034 5.29949 5.33376 5.38500 5.42253 5.50449 5.63082 5.85763 5.91126 5.99493 6.05297 6.15417 6.27932 6.40502 6.50716 6.52595 6.58717 6.88205 6.90720 7.00252 7.26085 7.40666 7.51962 7.81852 8.16972 8.50373 8.72500 9.47457 9.84972 10.93978 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.007422 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.613270 B = 3771.424079 C = 4714.856542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.046 3.954 3 Si 0.870 3.130 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.084 0.916 9 N -0.585 5.585 10 C 0.167 3.833 11 C -0.078 4.078 12 C -0.119 4.119 13 C -0.130 4.130 14 C -0.136 4.136 15 C -0.124 4.124 16 C -0.090 4.090 17 C 0.189 3.811 18 C -0.183 4.183 19 C 0.163 3.837 20 N -0.524 5.524 21 C 0.264 3.736 22 N -0.528 5.528 23 C 0.137 3.863 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 -3.552 -4.297 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.156 4.156 3 Si 0.700 3.300 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.397 4.397 8 H 0.102 0.898 9 N -0.304 5.304 10 C 0.043 3.957 11 C -0.081 4.081 12 C -0.137 4.137 13 C -0.148 4.148 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.109 4.109 17 C 0.062 3.938 18 C -0.190 4.190 19 C -0.004 4.004 20 N -0.237 5.237 21 C -0.024 4.024 22 N -0.242 5.242 23 C -0.030 4.030 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.557 -2.978 -3.490 10.601 hybrid contribution -0.102 0.744 -0.672 1.007 sum 9.455 -2.235 -4.162 10.569 Atomic orbital electron populations 1.69845 1.05895 1.27018 1.49789 1.25435 0.94997 0.97556 0.97644 0.87067 0.80770 0.85036 0.77145 1.21009 1.22707 1.19611 1.18777 0.85398 0.94391 1.41106 0.89824 1.44214 1.07069 1.50926 1.28149 1.20260 0.97987 0.93269 0.84219 1.20764 0.93529 0.97847 0.95956 1.20953 0.98650 0.97834 0.96302 1.20974 0.97327 1.00208 0.96257 1.20968 0.94116 1.00283 1.00067 1.21111 0.98553 0.97707 0.96855 1.21158 0.97091 0.98751 0.93901 1.19922 0.91917 0.92919 0.89071 1.22819 0.95769 1.01443 0.99015 1.23138 0.97455 0.92240 0.87536 1.68351 1.11632 1.09128 1.34623 1.24665 0.88798 0.94385 0.94572 1.68273 1.35466 1.19827 1.00638 1.22961 0.92570 0.90653 0.96783 0.92377 0.92018 0.93259 0.86962 0.87034 0.87093 0.86801 0.85845 0.92314 0.91446 0.81525 0.79814 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.97 55.49 0.78 -24.47 16 2 C 0.05 1.23 5.31 -17.43 -0.09 1.14 16 3 Si 0.87 21.44 25.01 -169.99 -4.25 17.19 16 4 H -0.28 -6.74 6.67 56.52 0.38 -6.36 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.27 -6.71 9.92 -15.06 -0.15 -6.86 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 N -0.58 -12.25 2.06 -175.98 -0.36 -12.61 16 10 C 0.17 3.34 4.60 -5.19 -0.02 3.31 16 11 C -0.08 -1.45 5.46 -104.62 -0.57 -2.02 16 12 C -0.12 -1.86 9.70 -39.58 -0.38 -2.24 16 13 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 14 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 15 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 16 C -0.09 -1.71 9.70 -39.59 -0.38 -2.10 16 17 C 0.19 3.26 5.85 -5.20 -0.03 3.23 16 18 C -0.18 -3.21 5.47 -104.36 -0.57 -3.78 16 19 C 0.16 2.97 11.03 -17.20 -0.19 2.79 16 20 N -0.52 -9.55 10.44 -14.58 -0.15 -9.71 16 21 C 0.26 4.40 12.29 -92.15 -1.13 3.27 16 22 N -0.53 -9.13 10.44 -14.58 -0.15 -9.28 16 23 C 0.14 2.28 11.00 -17.20 -0.19 2.09 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.06 1.38 3.16 -51.93 -0.16 1.22 16 26 H 0.05 0.87 8.01 -51.93 -0.42 0.46 16 27 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 31 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 32 H 0.06 0.87 7.97 -51.93 -0.41 0.45 16 33 H 0.07 1.14 8.06 -51.92 -0.42 0.72 16 34 H 0.17 2.94 8.06 -52.48 -0.42 2.52 16 35 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -29.62 311.30 -8.74 -38.36 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.38 Total: 4.03 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -4.91 Total: -8.20 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.11 Total: -56.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.25 Total: 17.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.62 -8.74 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137669172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.612 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds