Wall clock time and date at job start Mon Mar 30 2020 01:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00478 * 2 1 4 4 H 1.48503 * 109.46892 * 275.31270 * 3 2 1 5 5 H 1.48499 * 109.46810 * 35.30679 * 3 2 1 6 6 H 1.48498 * 109.47146 * 155.30829 * 3 2 1 7 7 C 1.38816 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00230 * 338.14556 * 7 2 1 9 9 N 1.36938 * 119.99951 * 158.14960 * 7 2 1 10 10 C 1.46498 * 119.99918 * 322.45202 * 9 7 2 11 11 C 1.50707 * 109.47195 * 270.00363 * 10 9 7 12 12 C 1.38234 * 119.99636 * 269.72524 * 11 10 9 13 13 C 1.38238 * 119.99783 * 179.76761 * 12 11 10 14 14 C 1.38234 * 119.99691 * 0.50504 * 13 12 11 15 15 C 1.38232 * 120.00183 * 359.74972 * 14 13 12 16 16 C 1.38227 * 119.99947 * 90.00121 * 11 10 9 17 17 C 1.46494 * 120.00025 * 142.45371 * 9 7 2 18 18 C 1.50695 * 109.47405 * 274.44981 * 17 9 7 19 19 C 1.38603 * 120.79698 * 85.45789 * 18 17 9 20 20 N 1.32331 * 119.10297 * 179.72681 * 19 18 17 21 21 C 1.31791 * 120.82213 * 0.27576 * 20 19 18 22 22 N 1.31804 * 121.75051 * 0.02812 * 21 20 19 23 23 C 1.32327 * 120.82143 * 359.96860 * 22 21 20 24 24 H 0.97001 * 119.99523 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47337 * 29.99981 * 10 9 7 26 26 H 1.08998 * 109.47485 * 150.00053 * 10 9 7 27 27 H 1.08003 * 120.00097 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.00049 * 180.23131 * 13 12 11 29 29 H 1.08002 * 119.99523 * 179.72804 * 14 13 12 30 30 H 1.08005 * 119.99856 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.00310 * 0.02562 * 16 11 10 32 32 H 1.09005 * 109.47415 * 154.45375 * 17 9 7 33 33 H 1.09007 * 109.47392 * 34.45568 * 17 9 7 34 34 H 1.08004 * 120.44841 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.12941 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.45121 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3856 2.1111 -1.3941 5 1 1.5084 2.6176 0.8092 6 1 3.5994 1.4102 0.5849 7 6 2.0102 -1.2022 -0.0005 8 1 1.5284 -2.1041 0.3472 9 7 3.3058 -1.2447 -0.4419 10 6 3.7183 -0.4230 -1.5825 11 6 3.5235 -1.2008 -2.8586 12 6 4.5494 -1.9836 -3.3543 13 6 4.3690 -2.7008 -4.5222 14 6 3.1665 -2.6270 -5.1999 15 6 2.1425 -1.8401 -4.7069 16 6 2.3210 -1.1270 -3.5362 17 6 4.2793 -2.1118 0.2264 18 6 4.8701 -1.3866 1.4078 19 6 4.2345 -1.4005 2.6394 20 7 4.7860 -0.7568 3.6556 21 6 5.9212 -0.1044 3.5057 22 7 6.5505 -0.0644 2.3483 23 6 6.0591 -0.6846 1.2876 24 1 -0.4849 0.8401 0.0004 25 1 3.1147 0.4840 -1.6142 26 1 4.7698 -0.1561 -1.4766 27 1 5.4906 -2.0375 -2.8273 28 1 5.1692 -3.3154 -4.9075 29 1 3.0271 -3.1839 -6.1147 30 1 1.2030 -1.7821 -5.2367 31 1 1.5212 -0.5115 -3.1515 32 1 5.0731 -2.3737 -0.4732 33 1 3.7825 -3.0197 0.5686 34 1 3.3042 -1.9335 2.7692 35 1 6.3472 0.4112 4.3536 36 1 6.5800 -0.6482 0.3422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137669172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:55 Heat of formation + Delta-G solvation = 83.268251 kcal Electronic energy + Delta-G solvation = -20078.605959 eV Core-core repulsion = 17141.970159 eV Total energy + Delta-G solvation = -2936.635800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82257 -40.08855 -37.76478 -34.55823 -34.31663 -33.53005 -31.70010 -31.61054 -28.16789 -27.38872 -25.38580 -24.72303 -23.27091 -22.70762 -21.91137 -19.01375 -18.47133 -18.29661 -17.55679 -17.20883 -16.35592 -16.03612 -15.73690 -15.62441 -15.22881 -14.73223 -14.53543 -14.42030 -14.35562 -14.13234 -14.05070 -13.32874 -13.22186 -12.86069 -12.40565 -12.23039 -12.06854 -11.82618 -11.74833 -11.70230 -11.48520 -10.77241 -10.29665 -10.12862 -9.65907 -9.49451 -8.88900 -8.25660 -5.61449 0.04511 0.19382 0.61979 0.66397 1.18544 1.31976 1.36125 2.31620 2.81947 2.94345 3.15353 3.34345 3.37739 3.58265 3.84583 4.02025 4.04129 4.07790 4.19354 4.30094 4.41184 4.44971 4.63748 4.69931 4.73337 4.87266 4.90892 5.01855 5.14940 5.27473 5.31675 5.55526 5.71178 5.75353 5.86994 5.95348 6.06621 6.16954 6.30035 6.90048 7.17058 7.55375 7.96534 8.93507 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.007422 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.613270 B = 3771.424079 C = 4714.856542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.320 1.320 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.594 5.594 10 C 0.166 3.834 11 C -0.099 4.099 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.130 4.130 15 C -0.134 4.134 16 C -0.123 4.123 17 C 0.192 3.808 18 C -0.191 4.191 19 C 0.147 3.853 20 N -0.544 5.544 21 C 0.264 3.736 22 N -0.537 5.537 23 C 0.141 3.859 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.218 0.782 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 -4.672 -5.750 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.199 4.199 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.249 1.249 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.071 0.929 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.101 4.101 12 C -0.134 4.134 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.152 4.152 16 C -0.142 4.142 17 C 0.066 3.934 18 C -0.197 4.197 19 C -0.018 4.018 20 N -0.257 5.257 21 C -0.023 4.023 22 N -0.251 5.251 23 C -0.025 4.025 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.162 0.838 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.234 0.766 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 13.232 -4.112 -4.949 14.714 hybrid contribution -1.098 0.949 -0.248 1.472 sum 12.134 -3.164 -5.196 13.574 Atomic orbital electron populations 1.69951 1.07285 1.27010 1.53891 1.25817 0.95225 0.99781 0.99065 0.86188 0.79251 0.82247 0.76776 1.20505 1.24912 1.19439 1.18594 0.87188 0.92708 1.38214 0.92929 1.44247 1.06397 1.51333 1.29442 1.20249 0.98748 0.92174 0.84636 1.20660 0.94341 0.99224 0.95871 1.21237 0.98699 0.96667 0.96829 1.21448 0.98030 0.99319 0.95196 1.21385 0.93451 0.99096 1.00905 1.21295 1.00017 0.97777 0.96081 1.21051 0.96944 1.00297 0.95950 1.20003 0.92000 0.91783 0.89615 1.22782 0.96543 1.01779 0.98630 1.23231 0.97610 0.92566 0.88443 1.68386 1.12578 1.09948 1.34835 1.25384 0.88037 0.93376 0.95549 1.68395 1.35576 1.20137 1.00959 1.23506 0.92034 0.89105 0.97855 0.92992 0.95097 0.90388 0.84048 0.83159 0.83765 0.85750 0.89769 0.88638 0.91579 0.82215 0.76575 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 13.97 21.65 0.30 -56.22 16 2 C 0.00 -0.08 5.31 84.86 0.45 0.37 16 3 Si 0.92 46.08 25.01 68.60 1.72 47.79 16 4 H -0.28 -13.37 6.67 99.48 0.66 -12.70 16 5 H -0.32 -16.77 7.11 99.48 0.71 -16.06 16 6 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.24 -12.19 9.92 84.03 0.83 -11.36 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 N -0.59 -24.42 2.06 -710.69 -1.46 -25.88 16 10 C 0.17 6.40 4.60 85.64 0.39 6.79 16 11 C -0.10 -3.50 5.46 -19.87 -0.11 -3.60 16 12 C -0.12 -3.15 9.70 22.27 0.22 -2.93 16 13 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 14 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 15 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 16 C -0.12 -4.76 9.70 22.27 0.22 -4.55 16 17 C 0.19 6.17 5.85 85.63 0.50 6.67 16 18 C -0.19 -6.25 5.47 -19.69 -0.11 -6.36 16 19 C 0.15 5.28 11.03 84.70 0.93 6.21 16 20 N -0.54 -19.17 10.44 -200.04 -2.09 -21.26 16 21 C 0.26 8.16 12.29 180.88 2.22 10.38 16 22 N -0.54 -16.85 10.44 -200.05 -2.09 -18.94 16 23 C 0.14 4.20 11.00 84.70 0.93 5.14 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.03 1.39 3.16 -2.39 -0.01 1.38 16 26 H 0.08 2.50 8.01 -2.39 -0.02 2.48 16 27 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.08 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.10 2.38 7.97 -2.38 -0.02 2.36 16 33 H 0.07 2.15 8.06 -2.38 -0.02 2.13 16 34 H 0.16 5.78 8.06 -2.91 -0.02 5.76 16 35 H 0.22 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.19 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -67.26 311.30 4.57 -62.69 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.03 Total: 14.73 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 7.15 Total: -2.92 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.33 Total: -122.30 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.72 Total: 47.79 kcal Total: -67.26 4.57 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137669172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.959 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds