Wall clock time and date at job start Mon Mar 30 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48495 * 109.47486 * 269.99788 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00420 * 3 2 1 6 6 H 1.48503 * 109.47197 * 149.99932 * 3 2 1 7 7 C 1.37878 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99504 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53516 * 114.16883 * 179.97438 * 9 7 2 11 11 N 1.47476 * 87.93176 * 220.13409 * 10 9 7 12 12 C 1.46901 * 110.99832 * 138.70377 * 11 10 9 13 13 C 1.50701 * 109.47166 * 170.00337 * 12 11 10 14 14 C 1.39390 * 119.99371 * 270.01997 * 13 12 11 15 15 N 1.31089 * 121.61645 * 179.97438 * 14 13 12 16 16 C 1.33528 * 121.29670 * 359.95891 * 15 14 13 17 17 C 1.40925 * 121.15114 * 180.02562 * 16 15 14 18 18 C 1.36501 * 118.23840 * 180.02562 * 17 16 15 19 19 C 1.39395 * 119.99599 * 359.97438 * 18 17 16 20 20 N 1.31087 * 121.62221 * 0.32712 * 19 18 17 21 21 C 1.33527 * 121.29426 * 359.38304 * 20 19 18 22 22 C 1.36492 * 119.99926 * 90.00139 * 13 12 11 23 23 C 1.47477 * 87.83392 * 27.01208 * 11 10 9 24 24 H 0.97004 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09001 * 113.25461 * 312.94737 * 9 7 2 26 26 H 1.09009 * 113.47456 * 105.36790 * 10 9 7 27 27 H 1.08999 * 113.47974 * 334.90699 * 10 9 7 28 28 H 1.09002 * 109.46938 * 50.00455 * 12 11 10 29 29 H 1.09005 * 109.47303 * 290.00388 * 12 11 10 30 30 H 1.07998 * 119.19264 * 359.97438 * 14 13 12 31 31 H 1.08005 * 120.88539 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.00273 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.18439 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.88359 * 359.97438 * 22 13 12 35 35 H 1.09008 * 113.47731 * 87.75645 * 23 11 10 36 36 H 1.09004 * 113.47300 * 218.21416 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.1498 -3.7437 -0.0028 11 7 1.2051 -4.3594 -0.9533 12 6 1.9206 -5.0884 -2.0090 13 6 0.9384 -5.9014 -2.8124 14 6 0.6416 -7.2094 -2.4330 15 7 -0.2080 -7.9448 -3.1081 16 6 -0.8281 -7.4703 -4.1914 17 6 -1.7413 -8.2634 -4.9146 18 6 -2.3409 -7.7187 -6.0132 19 6 -2.0442 -6.4106 -6.3924 20 7 -1.1899 -5.6773 -5.7210 21 6 -0.5744 -6.1496 -4.6343 22 6 0.3393 -5.3567 -3.9112 23 6 0.8519 -2.9981 -1.3974 24 1 -0.4850 0.8401 0.0004 25 1 0.4447 -2.5312 0.7310 26 1 2.1891 -4.2518 0.9609 27 1 3.1380 -3.5654 -0.4266 28 1 2.6575 -5.7522 -1.5567 29 1 2.4252 -4.3776 -2.6636 30 1 1.1233 -7.6272 -1.5614 31 1 -1.9610 -9.2754 -4.6077 32 1 -3.0457 -8.3010 -6.5882 33 1 -2.5266 -5.9926 -7.2637 34 1 0.5583 -4.3444 -4.2175 35 1 1.4937 -2.6208 -2.1936 36 1 -0.2089 -2.8743 -1.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139739923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:50 Heat of formation + Delta-G solvation = 101.041316 kcal Electronic energy + Delta-G solvation = -19229.317468 eV Core-core repulsion = 16293.452367 eV Total energy + Delta-G solvation = -2935.865102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20060 -39.13498 -37.79516 -34.26677 -32.84761 -31.88974 -30.91533 -28.78229 -26.03415 -24.96503 -24.69013 -23.68455 -22.45317 -21.71360 -18.72731 -18.52835 -17.53254 -17.10504 -16.58069 -15.15156 -15.10065 -14.81521 -14.70173 -14.48359 -14.03867 -13.66033 -13.26864 -13.02113 -12.97896 -12.54592 -12.18802 -11.95237 -11.62802 -11.18639 -11.01343 -10.84769 -10.68013 -10.60198 -10.31926 -9.85042 -9.39056 -9.08819 -9.00450 -8.83873 -8.71037 -8.46333 -8.09408 -6.08339 -4.13549 0.22480 0.60636 1.92688 2.82954 3.26983 3.34461 3.36885 3.98990 4.08299 4.28225 4.37828 4.44077 4.64667 4.71841 4.89175 4.94715 5.03768 5.19019 5.22449 5.38874 5.63241 5.67798 5.76628 5.81348 5.91908 6.03964 6.17602 6.24692 6.31042 6.40434 6.61806 6.63068 6.64830 7.08151 7.09859 7.68471 7.72249 7.78839 7.85479 7.98576 8.32752 8.89946 9.51998 11.01149 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.003971 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.508380 B = 7050.081391 C = 7693.141257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.004 4.004 11 N -0.480 5.480 12 C 0.056 3.944 13 C -0.096 4.096 14 C 0.157 3.843 15 N -0.473 5.473 16 C 0.071 3.929 17 C -0.044 4.044 18 C -0.167 4.167 19 C 0.126 3.874 20 N -0.463 5.463 21 C 0.081 3.919 22 C -0.040 4.040 23 C 0.004 3.996 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.164 0.836 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.055 0.945 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -14.732 -10.319 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.133 4.133 11 N -0.202 5.202 12 C -0.073 4.073 13 C -0.100 4.100 14 C -0.017 4.017 15 N -0.181 5.181 16 C -0.052 4.052 17 C -0.071 4.071 18 C -0.189 4.189 19 C -0.048 4.048 20 N -0.171 5.171 21 C -0.042 4.042 22 C -0.067 4.067 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.181 0.819 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.179 0.821 34 H 0.163 0.837 35 H 0.073 0.927 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.008 -15.108 -10.101 18.284 hybrid contribution 0.963 1.409 -0.501 1.778 sum -1.045 -13.700 -10.602 17.354 Atomic orbital electron populations 1.69968 1.06022 1.26829 1.49393 1.25022 0.94810 0.99207 0.94526 0.86614 0.79931 0.83421 0.78164 1.20627 1.21126 1.19795 1.21021 0.92749 0.90204 1.51684 0.92359 1.20084 0.94285 0.90843 0.92468 1.24035 0.95758 0.97657 0.95841 1.68940 1.27131 1.14441 1.09724 1.21634 0.93664 0.97460 0.94533 1.20686 0.98710 0.95586 0.95056 1.22986 0.91844 0.90087 0.96762 1.67990 1.07787 1.36528 1.05782 1.19627 0.98108 0.92808 0.94664 1.21264 0.92869 0.99885 0.93092 1.21926 1.01657 0.97197 0.98132 1.23034 0.93029 0.90767 0.97951 1.67957 1.07257 1.36286 1.05603 1.19611 0.97732 0.92681 0.94156 1.21224 0.92667 0.99748 0.93040 1.24165 1.00349 0.86436 1.01560 0.92806 0.91760 0.91720 0.92562 0.90213 0.92566 0.81877 0.83831 0.84093 0.82118 0.83686 0.92667 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.26 55.43 0.74 -24.64 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.82 8.83 -34.44 -0.30 -14.12 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 1.03 3.76 -91.24 -0.34 0.69 16 10 C 0.00 -0.09 7.25 -7.56 -0.05 -0.14 16 11 N -0.48 -9.21 6.32 -246.12 -1.55 -10.76 16 12 C 0.06 0.87 4.94 -4.97 -0.02 0.84 16 13 C -0.10 -1.45 5.45 -104.82 -0.57 -2.03 16 14 C 0.16 2.22 10.82 -17.44 -0.19 2.03 16 15 N -0.47 -7.09 10.34 -10.93 -0.11 -7.21 16 16 C 0.07 1.05 6.61 -84.83 -0.56 0.49 16 17 C -0.04 -0.51 10.11 -39.19 -0.40 -0.90 16 18 C -0.17 -1.55 10.02 -39.78 -0.40 -1.95 16 19 C 0.13 1.36 11.15 -17.44 -0.19 1.17 16 20 N -0.46 -6.83 10.34 -10.93 -0.11 -6.94 16 21 C 0.08 1.27 6.61 -84.83 -0.56 0.71 16 22 C -0.04 -0.63 9.75 -39.19 -0.38 -1.01 16 23 C 0.00 0.08 7.28 -7.56 -0.06 0.03 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 26 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 27 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 28 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 29 H 0.06 0.87 7.24 -51.93 -0.38 0.50 16 30 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.06 1.22 7.38 -51.92 -0.38 0.84 16 36 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.62 310.47 -10.03 -40.65 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.51 Total: 0.89 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -4.13 Total: -12.45 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.05 Total: -49.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.62 -10.03 -40.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139739923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.691 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds