Wall clock time and date at job start Mon Mar 30 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48495 * 109.47486 * 269.99788 * 3 2 1 5 5 H 1.48498 * 109.47040 * 30.00420 * 3 2 1 6 6 H 1.48503 * 109.47197 * 149.99932 * 3 2 1 7 7 C 1.37878 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99504 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53516 * 114.16883 * 179.97438 * 9 7 2 11 11 N 1.47476 * 87.93176 * 220.13409 * 10 9 7 12 12 C 1.46901 * 110.99832 * 138.70377 * 11 10 9 13 13 C 1.50701 * 109.47166 * 170.00337 * 12 11 10 14 14 C 1.39390 * 119.99371 * 270.01997 * 13 12 11 15 15 N 1.31089 * 121.61645 * 179.97438 * 14 13 12 16 16 C 1.33528 * 121.29670 * 359.95891 * 15 14 13 17 17 C 1.40925 * 121.15114 * 180.02562 * 16 15 14 18 18 C 1.36501 * 118.23840 * 180.02562 * 17 16 15 19 19 C 1.39395 * 119.99599 * 359.97438 * 18 17 16 20 20 N 1.31087 * 121.62221 * 0.32712 * 19 18 17 21 21 C 1.33527 * 121.29426 * 359.38304 * 20 19 18 22 22 C 1.36492 * 119.99926 * 90.00139 * 13 12 11 23 23 C 1.47477 * 87.83392 * 27.01208 * 11 10 9 24 24 H 0.97004 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09001 * 113.25461 * 312.94737 * 9 7 2 26 26 H 1.09009 * 113.47456 * 105.36790 * 10 9 7 27 27 H 1.08999 * 113.47974 * 334.90699 * 10 9 7 28 28 H 1.09002 * 109.46938 * 50.00455 * 12 11 10 29 29 H 1.09005 * 109.47303 * 290.00388 * 12 11 10 30 30 H 1.07998 * 119.19264 * 359.97438 * 14 13 12 31 31 H 1.08005 * 120.88539 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.00273 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.18439 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.88359 * 359.97438 * 22 13 12 35 35 H 1.09008 * 113.47731 * 87.75645 * 23 11 10 36 36 H 1.09004 * 113.47300 * 218.21416 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.1498 -3.7437 -0.0028 11 7 1.2051 -4.3594 -0.9533 12 6 1.9206 -5.0884 -2.0090 13 6 0.9384 -5.9014 -2.8124 14 6 0.6416 -7.2094 -2.4330 15 7 -0.2080 -7.9448 -3.1081 16 6 -0.8281 -7.4703 -4.1914 17 6 -1.7413 -8.2634 -4.9146 18 6 -2.3409 -7.7187 -6.0132 19 6 -2.0442 -6.4106 -6.3924 20 7 -1.1899 -5.6773 -5.7210 21 6 -0.5744 -6.1496 -4.6343 22 6 0.3393 -5.3567 -3.9112 23 6 0.8519 -2.9981 -1.3974 24 1 -0.4850 0.8401 0.0004 25 1 0.4447 -2.5312 0.7310 26 1 2.1891 -4.2518 0.9609 27 1 3.1380 -3.5654 -0.4266 28 1 2.6575 -5.7522 -1.5567 29 1 2.4252 -4.3776 -2.6636 30 1 1.1233 -7.6272 -1.5614 31 1 -1.9610 -9.2754 -4.6077 32 1 -3.0457 -8.3010 -6.5882 33 1 -2.5266 -5.9926 -7.2637 34 1 0.5583 -4.3444 -4.2175 35 1 1.4937 -2.6208 -2.1936 36 1 -0.2089 -2.8743 -1.6159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139739923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:50 Heat of formation + Delta-G solvation = 79.630668 kcal Electronic energy + Delta-G solvation = -19230.245904 eV Core-core repulsion = 16293.452367 eV Total energy + Delta-G solvation = -2936.793537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22572 -40.70749 -38.87351 -35.44496 -34.62764 -33.14452 -31.93389 -30.28718 -27.65824 -26.57524 -25.86357 -25.08742 -23.49001 -23.07946 -20.48988 -19.59110 -18.68082 -18.49115 -18.02582 -16.77757 -16.38888 -16.10016 -15.97465 -15.71759 -15.58769 -14.91073 -14.46562 -14.20695 -14.02788 -13.95089 -13.53429 -13.44174 -13.16845 -12.90029 -12.78237 -12.38615 -12.07211 -11.88654 -11.76462 -11.47872 -11.17577 -10.88284 -10.51456 -10.13078 -9.87945 -9.85077 -9.66455 -8.15745 -6.27434 -0.76111 -0.39682 0.89251 1.42582 1.43455 1.53934 1.85968 2.42211 2.97039 3.09763 3.13960 3.31941 3.39721 3.47419 3.65174 3.80823 3.91828 4.01283 4.16520 4.27779 4.40564 4.47261 4.56874 4.64150 4.67387 4.75191 4.85082 4.86976 4.98168 5.02927 5.11467 5.21913 5.29411 5.48848 5.62376 5.66941 5.84318 6.27731 6.34218 6.69610 6.80923 6.83210 7.41757 8.94061 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028874 B = 0.003971 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.508380 B = 7050.081391 C = 7693.141257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.019 3.981 10 C 0.014 3.986 11 N -0.478 5.478 12 C 0.060 3.940 13 C -0.102 4.102 14 C 0.149 3.851 15 N -0.481 5.481 16 C 0.050 3.950 17 C -0.056 4.056 18 C -0.146 4.146 19 C 0.129 3.871 20 N -0.503 5.503 21 C 0.057 3.943 22 C -0.058 4.058 23 C 0.018 3.982 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.189 0.811 31 H 0.167 0.833 32 H 0.190 0.810 33 H 0.198 0.802 34 H 0.132 0.868 35 H 0.054 0.946 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -16.365 -11.519 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.082 0.918 9 C 0.000 4.000 10 C -0.115 4.115 11 N -0.200 5.200 12 C -0.069 4.069 13 C -0.107 4.107 14 C -0.024 4.024 15 N -0.189 5.189 16 C -0.073 4.073 17 C -0.082 4.082 18 C -0.167 4.167 19 C -0.045 4.045 20 N -0.213 5.213 21 C -0.065 4.065 22 C -0.086 4.086 23 C -0.112 4.112 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.206 0.794 31 H 0.185 0.815 32 H 0.207 0.793 33 H 0.215 0.785 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.668 -16.758 -11.297 20.280 hybrid contribution 0.741 1.820 -0.261 1.982 sum -0.928 -14.938 -11.558 18.911 Atomic orbital electron populations 1.70109 1.07680 1.27550 1.50971 1.25856 0.95547 1.02841 0.94348 0.85561 0.78859 0.79017 0.78273 1.20140 1.21141 1.18631 1.21405 0.93172 0.91314 1.50842 0.91814 1.20044 0.94673 0.92456 0.92838 1.23852 0.95464 0.95163 0.96974 1.68830 1.27862 1.12673 1.10647 1.21660 0.94015 0.97549 0.93645 1.20639 0.98941 0.96124 0.94953 1.23325 0.91940 0.89679 0.97426 1.68039 1.08050 1.36695 1.06086 1.20071 0.99064 0.93042 0.95122 1.21657 0.92323 1.00750 0.93462 1.22428 1.00710 0.96530 0.97012 1.23831 0.91276 0.91375 0.97969 1.67975 1.09163 1.37859 1.06269 1.19732 0.98401 0.93344 0.94992 1.21291 0.93694 0.99533 0.94043 1.23852 0.98524 0.88604 1.00193 0.92944 0.95429 0.90101 0.91158 0.87078 0.92650 0.79436 0.81533 0.79284 0.78510 0.84978 0.92813 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 13.26 21.45 0.28 -54.48 16 2 C 0.01 0.73 5.46 84.65 0.46 1.20 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.53 -28.57 8.83 25.60 0.23 -28.34 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.02 0.96 3.76 -11.20 -0.04 0.91 16 10 C 0.01 0.54 7.25 83.57 0.61 1.14 16 11 N -0.48 -18.30 6.32 -932.59 -5.89 -24.19 16 12 C 0.06 1.81 4.94 85.56 0.42 2.23 16 13 C -0.10 -3.10 5.45 -19.99 -0.11 -3.21 16 14 C 0.15 4.13 10.82 85.08 0.92 5.05 16 15 N -0.48 -14.04 10.34 -188.50 -1.95 -15.99 16 16 C 0.05 1.44 6.61 40.37 0.27 1.71 16 17 C -0.06 -1.13 10.11 22.52 0.23 -0.90 16 18 C -0.15 -2.16 10.02 22.14 0.22 -1.94 16 19 C 0.13 2.47 11.15 85.08 0.95 3.42 16 20 N -0.50 -14.72 10.34 -188.48 -1.95 -16.67 16 21 C 0.06 1.82 6.61 40.37 0.27 2.08 16 22 C -0.06 -1.92 9.75 22.52 0.22 -1.71 16 23 C 0.02 0.81 7.28 83.56 0.61 1.42 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.03 1.57 8.11 -2.39 -0.02 1.55 16 26 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 27 H 0.07 2.56 7.87 -2.39 -0.02 2.54 16 28 H 0.11 2.67 8.03 -2.39 -0.02 2.65 16 29 H 0.06 1.70 7.24 -2.38 -0.02 1.68 16 30 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.05 2.46 7.38 -2.38 -0.02 2.44 16 36 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.22 310.47 -1.15 -70.37 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.08 Total: 12.81 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 5.25 Total: -16.94 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -9.50 Total: -111.32 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.22 -1.15 -70.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139739923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.000 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds