Wall clock time and date at job start Mon Mar 30 2020 01:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47195 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47581 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47247 * 120.00029 * 3 2 1 7 7 C 1.38812 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00110 * 157.00926 * 7 2 1 9 9 N 1.36933 * 119.99860 * 337.01392 * 7 2 1 10 10 C 1.46504 * 120.00199 * 326.04853 * 9 7 2 11 11 C 1.50699 * 109.47277 * 269.99869 * 10 9 7 12 12 C 1.38230 * 119.99972 * 269.73076 * 11 10 9 13 13 C 1.38243 * 119.99738 * 179.76663 * 12 11 10 14 14 C 1.38233 * 119.99845 * 0.49761 * 13 12 11 15 15 C 1.38230 * 120.00218 * 359.75116 * 14 13 12 16 16 C 1.38233 * 119.99746 * 89.99500 * 11 10 9 17 17 C 1.46507 * 120.00165 * 146.04875 * 9 7 2 18 18 C 1.50700 * 109.46673 * 271.75960 * 17 9 7 19 19 C 1.38608 * 120.07700 * 95.19534 * 18 17 9 20 20 C 1.38876 * 117.97390 * 180.02562 * 19 18 17 21 21 C 1.38613 * 117.96723 * 0.27971 * 20 19 18 22 22 N 1.31933 * 119.84129 * 359.43316 * 21 20 19 23 23 N 1.28339 * 122.18643 * 0.58831 * 22 21 20 24 24 H 0.97001 * 119.99832 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46917 * 30.00111 * 10 9 7 26 26 H 1.09003 * 109.47082 * 149.99974 * 10 9 7 27 27 H 1.07995 * 120.00041 * 359.97438 * 12 11 10 28 28 H 1.07995 * 119.99794 * 180.22594 * 13 12 11 29 29 H 1.08007 * 120.00068 * 179.72457 * 14 13 12 30 30 H 1.08002 * 120.00191 * 179.97438 * 15 14 13 31 31 H 1.07999 * 120.00559 * 0.02562 * 16 11 10 32 32 H 1.08998 * 109.47150 * 151.76404 * 17 9 7 33 33 H 1.08993 * 109.46677 * 31.75609 * 17 9 7 34 34 H 1.08003 * 121.01291 * 0.03963 * 19 18 17 35 35 H 1.08004 * 121.02231 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.07849 * 179.72102 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0259 -1.2394 -0.3647 9 7 1.4072 -2.3407 0.4641 10 6 0.4489 -2.2640 1.5697 11 6 1.1788 -2.4197 2.8789 12 6 1.3519 -3.6761 3.4285 13 6 2.0257 -3.8194 4.6271 14 6 2.5172 -2.7051 5.2811 15 6 2.3396 -1.4482 4.7340 16 6 1.6703 -1.3054 3.5328 17 6 1.7201 -3.6357 -0.1453 18 6 0.7970 -3.8781 -1.3115 19 6 1.2014 -3.5532 -2.5969 20 6 0.3158 -3.7945 -3.6390 21 6 -0.9202 -4.3399 -3.3287 22 7 -1.2168 -4.6226 -2.0746 23 7 -0.3983 -4.3996 -1.1115 24 1 -0.4850 0.8401 0.0004 25 1 -0.0551 -1.2977 1.5472 26 1 -0.2881 -3.0606 1.4676 27 1 0.9637 -4.5462 2.9199 28 1 2.1641 -4.8013 5.0547 29 1 3.0398 -2.8166 6.2197 30 1 2.7233 -0.5776 5.2451 31 1 1.5310 -0.3233 3.1058 32 1 1.5878 -4.4263 0.5932 33 1 2.7528 -3.6330 -0.4939 34 1 2.1757 -3.1256 -2.7823 35 1 0.5799 -3.5598 -4.6596 36 1 -1.6368 -4.5373 -4.1121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139972461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:47 Heat of formation + Delta-G solvation = 103.056641 kcal Electronic energy + Delta-G solvation = -19966.100993 eV Core-core repulsion = 17030.323282 eV Total energy + Delta-G solvation = -2935.777711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23793 -38.55024 -35.85991 -32.77347 -32.39069 -31.53458 -30.22064 -30.10075 -26.52982 -25.63931 -23.87812 -23.06301 -21.84869 -21.35357 -20.12121 -17.14113 -16.53700 -16.37440 -15.95192 -15.26973 -14.76929 -14.45665 -14.33744 -14.21521 -13.54370 -13.35445 -13.02777 -12.76244 -12.65878 -12.22041 -11.90431 -11.56744 -11.05451 -10.93719 -10.78754 -10.63760 -10.29336 -10.25238 -10.07914 -9.94895 -9.61433 -9.12510 -8.99063 -8.66855 -8.26785 -7.99619 -6.86472 -5.97501 -3.51128 1.46251 1.59314 2.05206 2.08916 3.25369 3.33360 3.35366 4.17772 4.37009 4.49277 4.74650 5.11367 5.16950 5.20425 5.34064 5.47857 5.52575 5.58681 5.61311 5.65727 5.88136 5.99045 6.13997 6.20475 6.27082 6.36957 6.48261 6.54859 6.74056 6.78275 6.83220 6.89918 7.09303 7.17495 7.43043 7.63593 7.64458 7.74316 8.29965 8.96018 9.43719 9.58444 10.15193 11.01482 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.007653 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.846593 B = 3657.676554 C = 5087.057211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.556 5.556 10 C 0.168 3.832 11 C -0.068 4.068 12 C -0.121 4.121 13 C -0.130 4.130 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.097 4.097 17 C 0.189 3.811 18 C 0.077 3.923 19 C -0.101 4.101 20 C -0.129 4.129 21 C 0.012 3.988 22 N -0.252 5.252 23 N -0.244 5.244 24 H 0.259 0.741 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -5.649 0.278 6.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.186 4.186 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.273 5.273 10 C 0.043 3.957 11 C -0.071 4.071 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.116 4.116 17 C 0.061 3.939 18 C -0.070 4.070 19 C -0.131 4.131 20 C -0.158 4.158 21 C -0.153 4.153 22 N -0.094 5.094 23 N -0.088 5.088 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.063 0.937 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.202 -6.082 1.353 6.609 hybrid contribution 1.447 1.715 -1.304 2.595 sum 3.649 -4.367 0.050 5.691 Atomic orbital electron populations 1.69986 1.05604 1.26290 1.49705 1.25146 0.94938 0.98837 0.99689 0.86489 0.79339 0.83147 0.78616 1.20596 1.21481 1.20454 1.19084 0.94768 0.85582 1.39736 0.91612 1.43915 1.50058 1.01797 1.31517 1.20181 0.89963 1.04267 0.81285 1.21119 0.96884 0.92163 0.96926 1.21095 0.99853 0.97263 0.95752 1.20988 0.99736 0.97828 0.96235 1.20895 1.02173 0.93054 0.99972 1.21077 1.00172 0.96812 0.96654 1.21112 0.97183 0.99213 0.94074 1.20067 0.93990 0.90093 0.89799 1.24324 0.95187 0.90892 0.96604 1.22209 1.01092 0.96697 0.93144 1.22241 0.94784 0.98160 1.00595 1.23982 0.96326 0.98353 0.96682 1.72882 1.25529 1.12853 0.98094 1.72844 1.01109 1.10454 1.24363 0.93108 0.87510 0.93681 0.86869 0.87272 0.87393 0.87246 0.86417 0.92000 0.91701 0.84102 0.84535 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.90 11.31 55.49 0.63 -23.28 16 2 C 0.02 0.40 4.95 -17.43 -0.09 0.32 16 3 Si 0.90 20.35 29.61 -169.99 -5.03 15.32 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.55 9.49 -15.06 -0.14 -6.69 16 8 H 0.07 1.62 7.93 -52.49 -0.42 1.21 16 9 N -0.56 -12.88 2.42 -175.98 -0.43 -13.31 16 10 C 0.17 3.88 5.41 -5.19 -0.03 3.85 16 11 C -0.07 -1.40 5.46 -104.63 -0.57 -1.97 16 12 C -0.12 -2.19 9.70 -39.58 -0.38 -2.57 16 13 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 14 C -0.14 -2.25 10.05 -39.59 -0.40 -2.65 16 15 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 16 C -0.10 -1.95 9.70 -39.58 -0.38 -2.33 16 17 C 0.19 3.79 6.00 -5.19 -0.03 3.76 16 18 C 0.08 1.57 6.44 -82.41 -0.53 1.04 16 19 C -0.10 -1.80 9.85 -39.21 -0.39 -2.18 16 20 C -0.13 -2.00 10.21 -39.21 -0.40 -2.40 16 21 C 0.01 0.19 11.31 -17.37 -0.20 0.00 16 22 N -0.25 -5.12 11.50 30.55 0.35 -4.76 16 23 N -0.24 -5.28 11.43 33.59 0.38 -4.90 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.11 2.79 5.26 -51.93 -0.27 2.51 16 26 H 0.04 1.05 8.01 -51.93 -0.42 0.63 16 27 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 33 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 34 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 35 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -29.29 316.27 -8.12 -37.41 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.46 Total: 5.68 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -4.34 Total: -16.93 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.94 Total: -46.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.29 -8.12 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139972461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.470 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds