Wall clock time and date at job start Mon Mar 30 2020 01:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48501 * 109.47195 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47581 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47247 * 120.00029 * 3 2 1 7 7 C 1.38812 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00110 * 157.00926 * 7 2 1 9 9 N 1.36933 * 119.99860 * 337.01392 * 7 2 1 10 10 C 1.46504 * 120.00199 * 326.04853 * 9 7 2 11 11 C 1.50699 * 109.47277 * 269.99869 * 10 9 7 12 12 C 1.38230 * 119.99972 * 269.73076 * 11 10 9 13 13 C 1.38243 * 119.99738 * 179.76663 * 12 11 10 14 14 C 1.38233 * 119.99845 * 0.49761 * 13 12 11 15 15 C 1.38230 * 120.00218 * 359.75116 * 14 13 12 16 16 C 1.38233 * 119.99746 * 89.99500 * 11 10 9 17 17 C 1.46507 * 120.00165 * 146.04875 * 9 7 2 18 18 C 1.50700 * 109.46673 * 271.75960 * 17 9 7 19 19 C 1.38608 * 120.07700 * 95.19534 * 18 17 9 20 20 C 1.38876 * 117.97390 * 180.02562 * 19 18 17 21 21 C 1.38613 * 117.96723 * 0.27971 * 20 19 18 22 22 N 1.31933 * 119.84129 * 359.43316 * 21 20 19 23 23 N 1.28339 * 122.18643 * 0.58831 * 22 21 20 24 24 H 0.97001 * 119.99832 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46917 * 30.00111 * 10 9 7 26 26 H 1.09003 * 109.47082 * 149.99974 * 10 9 7 27 27 H 1.07995 * 120.00041 * 359.97438 * 12 11 10 28 28 H 1.07995 * 119.99794 * 180.22594 * 13 12 11 29 29 H 1.08007 * 120.00068 * 179.72457 * 14 13 12 30 30 H 1.08002 * 120.00191 * 179.97438 * 15 14 13 31 31 H 1.07999 * 120.00559 * 0.02562 * 16 11 10 32 32 H 1.08998 * 109.47150 * 151.76404 * 17 9 7 33 33 H 1.08993 * 109.46677 * 31.75609 * 17 9 7 34 34 H 1.08003 * 121.01291 * 0.03963 * 19 18 17 35 35 H 1.08004 * 121.02231 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.07849 * 179.72102 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0259 -1.2394 -0.3647 9 7 1.4072 -2.3407 0.4641 10 6 0.4489 -2.2640 1.5697 11 6 1.1788 -2.4197 2.8789 12 6 1.3519 -3.6761 3.4285 13 6 2.0257 -3.8194 4.6271 14 6 2.5172 -2.7051 5.2811 15 6 2.3396 -1.4482 4.7340 16 6 1.6703 -1.3054 3.5328 17 6 1.7201 -3.6357 -0.1453 18 6 0.7970 -3.8781 -1.3115 19 6 1.2014 -3.5532 -2.5969 20 6 0.3158 -3.7945 -3.6390 21 6 -0.9202 -4.3399 -3.3287 22 7 -1.2168 -4.6226 -2.0746 23 7 -0.3983 -4.3996 -1.1115 24 1 -0.4850 0.8401 0.0004 25 1 -0.0551 -1.2977 1.5472 26 1 -0.2881 -3.0606 1.4676 27 1 0.9637 -4.5462 2.9199 28 1 2.1641 -4.8013 5.0547 29 1 3.0398 -2.8166 6.2197 30 1 2.7233 -0.5776 5.2451 31 1 1.5310 -0.3233 3.1058 32 1 1.5878 -4.4263 0.5932 33 1 2.7528 -3.6330 -0.4939 34 1 2.1757 -3.1256 -2.7823 35 1 0.5799 -3.5598 -4.6596 36 1 -1.6368 -4.5373 -4.1121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139972461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:47 Heat of formation + Delta-G solvation = 87.343451 kcal Electronic energy + Delta-G solvation = -19966.782368 eV Core-core repulsion = 17030.323282 eV Total energy + Delta-G solvation = -2936.459086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67685 -39.99293 -37.53810 -34.37632 -33.81066 -33.19582 -31.69205 -31.59359 -28.13772 -27.39582 -25.29245 -24.65408 -23.26476 -22.85935 -21.70861 -18.87564 -18.05312 -17.71673 -17.35606 -16.92896 -16.28906 -16.04847 -15.86728 -15.68236 -15.28280 -14.96322 -14.45472 -14.13916 -14.00753 -13.65791 -13.41524 -13.24981 -12.81719 -12.67507 -12.46146 -12.26725 -12.02893 -11.72907 -11.70090 -11.59506 -10.97133 -10.65435 -10.56496 -10.40773 -9.65575 -9.43676 -8.73069 -7.88716 -5.46244 0.08957 0.20870 0.65869 0.68660 1.42910 1.47847 1.52838 2.45832 2.79117 3.04582 3.22587 3.37750 3.84722 3.90555 3.93748 4.02630 4.15595 4.25369 4.30552 4.34666 4.42378 4.55283 4.69099 4.74374 4.84806 4.90888 4.99256 5.03937 5.31813 5.33769 5.38071 5.52415 5.58386 5.68949 5.73567 5.79061 6.05371 6.30167 6.41434 7.05996 7.74120 7.98642 8.28925 9.08043 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.007653 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.846593 B = 3657.676554 C = 5087.057211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.027 4.027 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.568 5.568 10 C 0.180 3.820 11 C -0.090 4.090 12 C -0.129 4.129 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.122 4.122 17 C 0.191 3.809 18 C 0.058 3.942 19 C -0.115 4.115 20 C -0.114 4.114 21 C 0.016 3.984 22 N -0.290 5.290 23 N -0.281 5.281 24 H 0.250 0.750 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -6.652 0.145 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.225 4.225 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.286 5.286 10 C 0.055 3.945 11 C -0.092 4.092 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.141 4.141 17 C 0.063 3.937 18 C -0.090 4.090 19 C -0.145 4.145 20 C -0.143 4.143 21 C -0.149 4.149 22 N -0.130 5.130 23 N -0.124 5.124 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.135 0.865 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.176 0.824 35 H 0.203 0.797 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.953 -7.117 1.224 8.232 hybrid contribution 0.900 1.879 -1.311 2.462 sum 4.853 -5.238 -0.087 7.141 Atomic orbital electron populations 1.70139 1.06996 1.26049 1.52331 1.25691 0.95288 1.01225 1.00322 0.85645 0.78060 0.79953 0.78708 1.19617 1.22484 1.20401 1.19279 0.94791 0.86414 1.38384 0.91388 1.43967 1.49859 1.02352 1.32389 1.19825 0.90050 1.01474 0.83177 1.20876 0.98283 0.93694 0.96384 1.21178 1.00449 0.96202 0.96897 1.21387 0.97855 0.99806 0.94875 1.21352 1.00862 0.91932 1.00914 1.21339 0.99188 0.98765 0.95423 1.21011 0.99314 0.97855 0.95878 1.20088 0.94766 0.88719 0.90127 1.24305 0.94893 0.91950 0.97805 1.22521 1.02494 0.96632 0.92835 1.22776 0.93485 0.95759 1.02256 1.24729 0.97598 0.96397 0.96219 1.72778 1.26066 1.14512 0.99607 1.72749 1.01891 1.11975 1.25774 0.94044 0.90997 0.95457 0.86482 0.83656 0.83394 0.84947 0.89138 0.91744 0.90075 0.82403 0.79715 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.27 11.31 21.65 0.24 -52.03 16 2 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 3 Si 0.95 42.87 29.61 68.60 2.03 44.90 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.26 -13.20 9.49 84.03 0.80 -12.40 16 8 H 0.07 3.37 7.93 -2.91 -0.02 3.35 16 9 N -0.57 -27.17 2.42 -710.68 -1.72 -28.89 16 10 C 0.18 8.81 5.41 85.63 0.46 9.28 16 11 C -0.09 -3.81 5.46 -19.87 -0.11 -3.92 16 12 C -0.13 -4.59 9.70 22.27 0.22 -4.38 16 13 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 14 C -0.13 -3.71 10.05 22.27 0.22 -3.49 16 15 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 16 C -0.12 -5.00 9.70 22.27 0.22 -4.78 16 17 C 0.19 7.79 6.00 85.63 0.51 8.30 16 18 C 0.06 2.39 6.44 42.63 0.27 2.67 16 19 C -0.12 -3.93 9.85 22.51 0.22 -3.70 16 20 C -0.11 -3.19 10.21 22.51 0.23 -2.96 16 21 C 0.02 0.50 11.31 84.77 0.96 1.46 16 22 N -0.29 -11.72 11.50 -57.26 -0.66 -12.38 16 23 N -0.28 -12.47 11.43 -47.63 -0.54 -13.02 16 24 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.07 4.05 5.26 -2.39 -0.01 4.04 16 26 H 0.03 1.37 8.01 -2.39 -0.02 1.35 16 27 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 29 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 32 H 0.06 2.52 8.06 -2.39 -0.02 2.50 16 33 H 0.08 2.96 7.96 -2.39 -0.02 2.94 16 34 H 0.16 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.19 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -67.21 316.27 5.30 -61.91 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.07 Total: 21.78 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.87 Total: -22.28 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -2.68 Total: -106.31 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -67.21 5.30 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139972461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.255 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds