Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47197 * 270.00091 * 3 2 1 5 5 H 1.48500 * 109.47408 * 29.99992 * 3 2 1 6 6 H 1.48506 * 109.47391 * 150.00218 * 3 2 1 7 7 C 1.38816 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99679 * 222.51547 * 7 2 1 9 9 N 1.36941 * 119.99865 * 42.51513 * 7 2 1 10 10 C 1.46501 * 120.00232 * 342.93062 * 9 7 2 11 11 C 1.50698 * 109.47260 * 263.44604 * 10 9 7 12 12 C 1.38228 * 120.00505 * 66.10037 * 11 10 9 13 13 C 1.38232 * 120.00330 * 179.97438 * 12 11 10 14 14 C 1.38232 * 120.00100 * 0.09858 * 13 12 11 15 15 C 1.38234 * 119.99789 * 359.86016 * 14 13 12 16 16 C 1.38234 * 120.00169 * 0.09105 * 15 14 13 17 17 C 1.46503 * 119.99742 * 162.93164 * 9 7 2 18 18 C 1.50694 * 109.47022 * 271.31642 * 17 9 7 19 19 C 1.38920 * 121.01605 * 269.70488 * 18 17 9 20 20 C 1.38567 * 117.97497 * 179.78983 * 19 18 17 21 21 N 1.31962 * 119.84640 * 0.49234 * 20 19 18 22 22 N 1.28354 * 122.17988 * 359.74359 * 21 20 19 23 23 C 1.31961 * 122.17726 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46851 * 143.43954 * 10 9 7 26 26 H 1.09001 * 109.46961 * 23.44091 * 10 9 7 27 27 H 1.08011 * 119.99484 * 359.70705 * 12 11 10 28 28 H 1.08001 * 119.99950 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.00477 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.99941 * 180.02562 * 15 14 13 31 31 H 1.07994 * 120.00390 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.46906 * 31.31555 * 17 9 7 33 33 H 1.09000 * 109.46872 * 151.31912 * 17 9 7 34 34 H 1.08007 * 121.01088 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.07824 * 180.20910 * 20 19 18 36 36 H 1.08005 * 120.07286 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8773 -1.3254 0.6315 9 7 1.5956 -2.2319 -0.8025 10 6 0.2436 -2.2223 -1.3665 11 6 -0.6684 -3.0513 -0.4992 12 6 -0.9572 -2.6422 0.7892 13 6 -1.7942 -3.4024 1.5845 14 6 -2.3407 -4.5727 1.0921 15 6 -2.0526 -4.9813 -0.1967 16 6 -1.2164 -4.2207 -0.9923 17 6 2.5041 -3.3430 -1.0963 18 6 3.3197 -3.0148 -2.3202 19 6 2.8770 -3.3631 -3.5900 20 6 3.6751 -3.0266 -4.6717 21 7 4.8211 -2.4032 -4.4734 22 7 5.2325 -2.0856 -3.2998 23 6 4.5371 -2.3617 -2.2128 24 1 -0.4850 0.8400 -0.0004 25 1 0.2668 -2.6401 -2.3729 26 1 -0.1260 -1.1976 -1.4069 27 1 -0.5255 -1.7308 1.1759 28 1 -2.0195 -3.0829 2.5913 29 1 -2.9943 -5.1668 1.7135 30 1 -2.4799 -5.8955 -0.5815 31 1 -0.9910 -4.5401 -1.9990 32 1 3.1697 -3.5021 -0.2480 33 1 1.9243 -4.2480 -1.2781 34 1 1.9375 -3.8771 -3.7303 35 1 3.3621 -3.2780 -5.6743 36 1 4.9160 -2.0791 -1.2417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139983926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = 114.154646 kcal Electronic energy + Delta-G solvation = -20018.458762 eV Core-core repulsion = 17083.162297 eV Total energy + Delta-G solvation = -2935.296465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45862 -38.47448 -36.14841 -33.35422 -32.09233 -31.50560 -30.31508 -30.00144 -26.67732 -25.74248 -24.01215 -23.12237 -21.75700 -21.29720 -20.03028 -17.39509 -16.77066 -16.29861 -15.83517 -15.47228 -15.12878 -14.41981 -14.32169 -14.06398 -13.75938 -13.38393 -13.17856 -12.81572 -12.60069 -12.16787 -11.87813 -11.73509 -11.31465 -11.04168 -10.60622 -10.53576 -10.38823 -10.26034 -10.16731 -9.76635 -9.65685 -9.35823 -9.30043 -8.46532 -8.12584 -7.83405 -7.28562 -6.26891 -3.30965 1.27573 1.40861 2.14714 2.26422 3.28768 3.40218 3.45783 4.01276 4.32761 4.58905 4.62590 4.84912 4.98406 5.12371 5.17742 5.40728 5.46299 5.55057 5.63030 5.71900 5.74621 6.00129 6.04185 6.25912 6.29202 6.33098 6.42374 6.54300 6.58071 6.73639 6.83821 6.98758 7.17921 7.39185 7.51400 7.63077 7.74320 7.90521 8.17020 8.86665 9.15591 9.52491 10.00647 10.76982 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.007769 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.520423 B = 3603.388171 C = 5120.708964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.032 3.968 3 Si 0.859 3.141 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.279 4.279 8 H 0.084 0.916 9 N -0.576 5.576 10 C 0.159 3.841 11 C -0.070 4.070 12 C -0.068 4.068 13 C -0.143 4.143 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.137 4.137 17 C 0.187 3.813 18 C -0.075 4.075 19 C -0.126 4.126 20 C 0.033 3.967 21 N -0.268 5.268 22 N -0.256 5.256 23 C 0.057 3.943 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.135 0.865 27 H 0.161 0.839 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 -8.123 -2.095 8.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.168 4.168 3 Si 0.686 3.314 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.406 4.406 8 H 0.102 0.898 9 N -0.295 5.295 10 C 0.035 3.965 11 C -0.073 4.073 12 C -0.086 4.086 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.156 4.156 17 C 0.059 3.941 18 C -0.091 4.091 19 C -0.156 4.156 20 C -0.131 4.131 21 N -0.110 5.110 22 N -0.097 5.097 23 C -0.108 4.108 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.151 0.849 27 H 0.178 0.822 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.178 0.822 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.358 -7.298 -2.708 7.792 hybrid contribution -1.125 0.195 0.589 1.284 sum -1.482 -7.102 -2.119 7.559 Atomic orbital electron populations 1.69992 1.05863 1.26565 1.47341 1.24860 0.94759 0.97771 0.99402 0.86943 0.81194 0.85031 0.78198 1.21305 1.21971 1.20120 1.19117 1.11992 0.89321 1.20158 0.89798 1.44056 1.07641 1.22858 1.54917 1.20963 0.82638 1.02783 0.90145 1.20933 0.95896 0.94051 0.96414 1.21818 0.93856 0.99688 0.93284 1.21228 0.99548 0.95705 0.99611 1.20907 1.01563 0.97626 0.95969 1.20854 1.00509 0.99738 0.94879 1.21081 0.99413 0.96004 0.99069 1.19768 0.91801 0.91104 0.91467 1.22444 0.94318 0.93680 0.98608 1.22207 1.00625 0.99852 0.92889 1.24113 0.92743 0.95949 1.00312 1.72883 1.13259 1.09498 1.15405 1.72882 1.28215 1.13747 0.94818 1.24165 0.92553 0.94540 0.99578 0.92681 0.96284 0.84863 0.82220 0.87564 0.87838 0.87787 0.87780 0.91765 0.92389 0.84297 0.82150 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.89 8.07 55.49 0.45 -20.44 16 2 C 0.03 0.78 4.95 -17.43 -0.09 0.69 16 3 Si 0.86 19.72 29.69 -169.99 -5.05 14.67 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.28 -6.56 9.29 -15.06 -0.14 -6.70 16 8 H 0.08 1.97 8.05 -52.49 -0.42 1.55 16 9 N -0.58 -12.14 2.45 -175.99 -0.43 -12.58 16 10 C 0.16 3.34 5.34 -5.19 -0.03 3.31 16 11 C -0.07 -1.41 5.47 -104.63 -0.57 -1.98 16 12 C -0.07 -1.42 9.25 -39.59 -0.37 -1.79 16 13 C -0.14 -2.60 10.05 -39.59 -0.40 -3.00 16 14 C -0.14 -2.34 10.05 -39.59 -0.40 -2.74 16 15 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 16 C -0.14 -2.40 9.67 -39.58 -0.38 -2.78 16 17 C 0.19 3.28 5.87 -5.19 -0.03 3.25 16 18 C -0.08 -1.28 5.51 -104.25 -0.57 -1.85 16 19 C -0.13 -1.90 9.93 -39.21 -0.39 -2.29 16 20 C 0.03 0.49 11.31 -17.37 -0.20 0.30 16 21 N -0.27 -4.88 11.50 30.55 0.35 -4.53 16 22 N -0.26 -4.89 11.50 30.55 0.35 -4.54 16 23 C 0.06 1.01 11.03 -17.37 -0.19 0.82 16 24 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 25 H 0.02 0.36 7.87 -51.93 -0.41 -0.04 16 26 H 0.13 3.20 4.84 -51.93 -0.25 2.95 16 27 H 0.16 3.76 5.57 -52.48 -0.29 3.47 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.10 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.10 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.10 1.61 7.96 -52.49 -0.42 1.19 16 32 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 33 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 34 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -26.40 309.29 -8.11 -34.51 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.30 Total: 5.71 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -4.15 Total: -17.47 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.72 Total: -42.08 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.05 Total: 14.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.40 -8.11 -34.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139983926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.665 kcal (2) G-P(sol) polarization free energy of solvation -26.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds