Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47197 * 270.00091 * 3 2 1 5 5 H 1.48500 * 109.47408 * 29.99992 * 3 2 1 6 6 H 1.48506 * 109.47391 * 150.00218 * 3 2 1 7 7 C 1.38816 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99679 * 222.51547 * 7 2 1 9 9 N 1.36941 * 119.99865 * 42.51513 * 7 2 1 10 10 C 1.46501 * 120.00232 * 342.93062 * 9 7 2 11 11 C 1.50698 * 109.47260 * 263.44604 * 10 9 7 12 12 C 1.38228 * 120.00505 * 66.10037 * 11 10 9 13 13 C 1.38232 * 120.00330 * 179.97438 * 12 11 10 14 14 C 1.38232 * 120.00100 * 0.09858 * 13 12 11 15 15 C 1.38234 * 119.99789 * 359.86016 * 14 13 12 16 16 C 1.38234 * 120.00169 * 0.09105 * 15 14 13 17 17 C 1.46503 * 119.99742 * 162.93164 * 9 7 2 18 18 C 1.50694 * 109.47022 * 271.31642 * 17 9 7 19 19 C 1.38920 * 121.01605 * 269.70488 * 18 17 9 20 20 C 1.38567 * 117.97497 * 179.78983 * 19 18 17 21 21 N 1.31962 * 119.84640 * 0.49234 * 20 19 18 22 22 N 1.28354 * 122.17988 * 359.74359 * 21 20 19 23 23 C 1.31961 * 122.17726 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99853 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46851 * 143.43954 * 10 9 7 26 26 H 1.09001 * 109.46961 * 23.44091 * 10 9 7 27 27 H 1.08011 * 119.99484 * 359.70705 * 12 11 10 28 28 H 1.08001 * 119.99950 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.00477 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.99941 * 180.02562 * 15 14 13 31 31 H 1.07994 * 120.00390 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.46906 * 31.31555 * 17 9 7 33 33 H 1.09000 * 109.46872 * 151.31912 * 17 9 7 34 34 H 1.08007 * 121.01088 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.07824 * 180.20910 * 20 19 18 36 36 H 1.08005 * 120.07286 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8773 -1.3254 0.6315 9 7 1.5956 -2.2319 -0.8025 10 6 0.2436 -2.2223 -1.3665 11 6 -0.6684 -3.0513 -0.4992 12 6 -0.9572 -2.6422 0.7892 13 6 -1.7942 -3.4024 1.5845 14 6 -2.3407 -4.5727 1.0921 15 6 -2.0526 -4.9813 -0.1967 16 6 -1.2164 -4.2207 -0.9923 17 6 2.5041 -3.3430 -1.0963 18 6 3.3197 -3.0148 -2.3202 19 6 2.8770 -3.3631 -3.5900 20 6 3.6751 -3.0266 -4.6717 21 7 4.8211 -2.4032 -4.4734 22 7 5.2325 -2.0856 -3.2998 23 6 4.5371 -2.3617 -2.2128 24 1 -0.4850 0.8400 -0.0004 25 1 0.2668 -2.6401 -2.3729 26 1 -0.1260 -1.1976 -1.4069 27 1 -0.5255 -1.7308 1.1759 28 1 -2.0195 -3.0829 2.5913 29 1 -2.9943 -5.1668 1.7135 30 1 -2.4799 -5.8955 -0.5815 31 1 -0.9910 -4.5401 -1.9990 32 1 3.1697 -3.5021 -0.2480 33 1 1.9243 -4.2480 -1.2781 34 1 1.9375 -3.8771 -3.7303 35 1 3.3621 -3.2780 -5.6743 36 1 4.9160 -2.0791 -1.2417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139983926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = 101.782708 kcal Electronic energy + Delta-G solvation = -20018.995249 eV Core-core repulsion = 17083.162297 eV Total energy + Delta-G solvation = -2935.832952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77609 -39.87322 -37.67100 -34.84263 -33.38961 -33.10956 -31.77333 -31.36311 -28.14246 -27.36018 -25.31540 -24.61020 -23.14407 -22.69749 -21.50832 -18.98765 -18.20676 -17.59440 -17.17985 -16.97699 -16.53753 -15.90226 -15.70602 -15.58257 -15.40364 -14.88819 -14.54438 -14.16045 -13.96048 -13.53665 -13.42417 -13.26719 -12.98106 -12.64622 -12.36011 -12.10538 -12.05535 -11.66925 -11.61220 -11.29958 -10.95220 -10.72955 -10.62667 -10.22909 -9.49593 -9.29964 -8.92398 -8.07427 -5.10513 -0.02577 0.14770 0.78102 0.89535 1.40470 1.52159 1.55450 2.45496 2.73542 3.03531 3.22323 3.35173 3.75497 3.80378 3.92991 3.98082 4.12036 4.30244 4.35848 4.46724 4.54893 4.63580 4.71418 4.86284 4.94139 4.97106 5.06441 5.17444 5.27750 5.45463 5.46990 5.59064 5.73377 5.80232 5.84617 6.03087 6.20071 6.39215 6.60764 7.09782 7.81760 7.83916 8.25891 8.93863 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.007769 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.520423 B = 3603.388171 C = 5120.708964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C -0.001 4.001 3 Si 0.893 3.107 4 H -0.305 1.305 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.270 4.270 8 H 0.078 0.922 9 N -0.587 5.587 10 C 0.163 3.837 11 C -0.088 4.088 12 C -0.098 4.098 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.137 4.137 17 C 0.191 3.809 18 C -0.085 4.085 19 C -0.115 4.115 20 C 0.039 3.961 21 N -0.294 5.294 22 N -0.285 5.285 23 C 0.047 3.953 24 H 0.255 0.745 25 H 0.037 0.963 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.204 0.796 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -10.949 -3.230 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.200 4.200 3 Si 0.722 3.278 4 H -0.234 1.234 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.398 4.398 8 H 0.096 0.904 9 N -0.307 5.307 10 C 0.039 3.961 11 C -0.091 4.091 12 C -0.116 4.116 13 C -0.171 4.171 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.155 4.155 17 C 0.064 3.936 18 C -0.100 4.100 19 C -0.144 4.144 20 C -0.126 4.126 21 N -0.135 5.135 22 N -0.126 5.126 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.189 0.811 35 H 0.220 0.780 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.481 -10.136 -3.845 10.941 hybrid contribution -0.779 0.938 0.892 1.510 sum -2.260 -9.198 -2.953 9.921 Atomic orbital electron populations 1.70145 1.05951 1.25859 1.48827 1.25120 0.95117 0.98730 1.01016 0.86388 0.80581 0.84124 0.76686 1.23365 1.22731 1.20111 1.19197 1.10993 0.89969 1.19658 0.90415 1.44141 1.08640 1.23071 1.54810 1.20730 0.82738 1.01406 0.91249 1.20852 0.96857 0.95328 0.96028 1.21614 0.95879 0.99526 0.94602 1.21383 0.99319 0.96407 0.99962 1.21278 1.01019 0.96777 0.96630 1.21286 0.99227 1.00458 0.94400 1.21318 0.98965 0.94927 1.00338 1.19811 0.91515 0.90501 0.91800 1.22374 0.94269 0.94104 0.99208 1.22598 1.01363 0.98582 0.91882 1.24751 0.91327 0.94167 1.02312 1.72798 1.15017 1.10570 1.15159 1.72834 1.29294 1.15045 0.95398 1.24302 0.93196 0.94796 0.99595 0.93486 0.94508 0.88185 0.85737 0.86641 0.84655 0.84163 0.85308 0.91687 0.90460 0.81127 0.77977 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.83 8.07 21.65 0.17 -43.65 16 2 C 0.00 -0.07 4.95 84.86 0.42 0.35 16 3 Si 0.89 41.85 29.69 68.60 2.04 43.88 16 4 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.27 -12.91 9.29 84.03 0.78 -12.13 16 8 H 0.08 3.73 8.05 -2.91 -0.02 3.71 16 9 N -0.59 -24.46 2.45 -710.70 -1.74 -26.21 16 10 C 0.16 6.73 5.34 85.63 0.46 7.19 16 11 C -0.09 -3.43 5.47 -19.87 -0.11 -3.54 16 12 C -0.10 -4.09 9.25 22.27 0.21 -3.88 16 13 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 14 C -0.14 -4.09 10.05 22.27 0.22 -3.86 16 15 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 16 C -0.14 -4.32 9.67 22.27 0.22 -4.10 16 17 C 0.19 6.38 5.87 85.63 0.50 6.88 16 18 C -0.09 -2.73 5.51 -19.62 -0.11 -2.84 16 19 C -0.11 -3.08 9.93 22.51 0.22 -2.86 16 20 C 0.04 1.04 11.31 84.75 0.96 2.00 16 21 N -0.29 -10.27 11.50 -57.27 -0.66 -10.93 16 22 N -0.29 -10.80 11.50 -57.26 -0.66 -11.46 16 23 C 0.05 1.64 11.03 84.75 0.93 2.58 16 24 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 25 H 0.04 1.34 7.87 -2.39 -0.02 1.32 16 26 H 0.10 4.88 4.84 -2.39 -0.01 4.87 16 27 H 0.12 6.11 5.57 -2.90 -0.02 6.09 16 28 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.13 3.36 7.96 -2.91 -0.02 3.34 16 32 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 33 H 0.08 2.28 8.03 -2.39 -0.02 2.26 16 34 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.17 5.58 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -58.67 309.29 5.38 -53.28 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.08 Total: 18.05 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 5.15 Total: -22.96 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.89 Total: -92.25 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.04 Total: 43.88 kcal Total: -58.67 5.38 -53.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139983926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.065 kcal (2) G-P(sol) polarization free energy of solvation -58.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds