Wall clock time and date at job start Mon Mar 30 2020 00:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00249 * 2 1 4 4 C 1.50699 * 109.47248 * 270.00052 * 3 2 1 5 5 N 1.31700 * 126.18263 * 275.18945 * 4 3 2 6 6 C 1.34346 * 105.81682 * 180.22685 * 5 4 3 7 7 O 1.21897 * 126.56514 * 179.77935 * 6 5 4 8 8 O 1.34146 * 106.86491 * 359.75336 * 6 5 4 9 9 N 1.21340 * 109.54848 * 359.97438 * 8 6 5 10 10 H 0.97001 * 124.93126 * 179.97438 * 9 8 6 11 11 C 1.34780 * 119.99485 * 180.02562 * 2 1 3 12 12 O 1.21284 * 119.99827 * 180.02562 * 11 2 1 13 13 C 1.50700 * 120.00043 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.46777 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46721 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47036 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00069 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00021 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99849 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47006 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47243 * 119.99912 * 20 18 16 23 23 H 1.48496 * 109.46667 * 239.99419 * 20 18 16 24 24 H 1.09000 * 109.47385 * 89.99138 * 1 2 3 25 25 H 1.08993 * 109.47616 * 209.99748 * 1 2 3 26 26 H 1.09009 * 109.46821 * 329.99674 * 1 2 3 27 27 H 1.09000 * 109.46889 * 150.00278 * 3 2 1 28 28 H 1.08993 * 109.47134 * 30.00859 * 3 2 1 29 29 H 1.08998 * 109.46897 * 300.00163 * 13 11 2 30 30 H 1.09000 * 109.47252 * 60.00066 * 13 11 2 31 31 H 1.08998 * 109.47414 * 299.99692 * 14 13 11 32 32 H 1.09000 * 109.47302 * 59.99942 * 14 13 11 33 33 H 1.09005 * 109.46734 * 299.99429 * 15 14 13 34 34 H 1.09000 * 109.47533 * 59.99773 * 15 14 13 35 35 H 0.96997 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.4498 1.3204 -2.1859 6 6 3.2792 1.9552 -3.3575 7 8 3.9978 1.8740 -4.3388 8 8 2.1665 2.6952 -3.2408 9 7 1.6935 2.5454 -2.1335 10 1 0.8872 2.9774 -1.8107 11 6 2.1388 -1.1673 -0.0005 12 8 3.3516 -1.1674 -0.0001 13 6 1.3852 -2.4723 -0.0005 14 6 2.3794 -3.6353 -0.0005 15 6 1.6143 -4.9603 -0.0012 16 6 2.5935 -6.1058 -0.0005 17 1 3.6553 -5.9085 -0.0002 18 6 2.1338 -7.4057 -0.0015 19 7 0.8408 -7.6459 -0.0024 20 14 3.3477 -8.8256 -0.0014 21 1 4.7335 -8.2921 -0.0009 22 1 3.1365 -9.6573 1.2105 23 1 3.1378 -9.6561 -1.2144 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3634 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1383 0.5138 28 1 1.6086 2.0283 0.5139 29 1 0.7589 -2.5302 0.8897 30 1 0.7582 -2.5298 -0.8903 31 1 3.0060 -3.5776 -0.8905 32 1 3.0061 -3.5776 0.8894 33 1 0.9874 -5.0182 0.8887 34 1 0.9878 -5.0178 -0.8913 35 1 0.5175 -8.5604 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143360765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:24 Heat of formation + Delta-G solvation = 1.669329 kcal Electronic energy + Delta-G solvation = -20129.961543 eV Core-core repulsion = 16746.645335 eV Total energy + Delta-G solvation = -3383.316209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.87011 -40.02025 -38.22489 -36.80136 -35.30492 -34.26783 -32.76124 -32.07896 -29.65064 -27.74896 -26.48925 -24.38635 -23.72920 -22.58065 -20.67337 -20.17130 -19.16349 -18.73078 -17.10181 -17.02753 -16.50533 -16.22963 -15.97414 -15.73222 -14.62406 -14.41170 -13.89857 -13.60050 -13.55851 -13.08275 -12.89373 -12.81410 -12.25929 -12.03909 -11.83632 -11.76223 -11.40895 -10.82512 -10.77243 -10.61031 -10.50746 -9.79987 -9.69615 -9.40132 -9.31295 -9.21435 -9.02434 -8.32233 -5.97890 -3.98934 0.55509 1.42742 2.45942 2.62439 2.85134 3.01839 3.34898 3.42362 3.48693 3.57292 4.18879 4.49511 4.55011 4.67690 4.79615 5.03732 5.12309 5.31973 5.38734 5.42943 5.58864 5.63517 5.96844 6.05583 6.16006 6.69420 6.89034 7.05766 7.14459 7.31791 7.66114 7.70050 7.81707 8.02665 8.17587 8.46801 9.08373 9.65413 11.13680 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003531 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.898418 B = 7928.797943 C = 8465.830930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.183 3.817 4 C 0.332 3.668 5 N -0.521 5.521 6 C 0.555 3.445 7 O -0.467 6.467 8 O -0.088 6.088 9 N -0.502 5.502 10 H 0.467 0.533 11 C 0.513 3.487 12 O -0.503 6.503 13 C -0.133 4.133 14 C -0.098 4.098 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 24.030 2.905 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.364 5.364 3 C 0.057 3.943 4 C 0.061 3.939 5 N -0.281 5.281 6 C 0.304 3.696 7 O -0.347 6.347 8 O -0.110 6.110 9 N -0.170 5.170 10 H 0.320 0.680 11 C 0.303 3.697 12 O -0.374 6.374 13 C -0.173 4.173 14 C -0.136 4.136 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.791 23.513 2.086 24.305 hybrid contribution -0.484 -0.084 -0.341 0.598 sum -6.274 23.429 1.745 24.317 Atomic orbital electron populations 1.21963 0.78521 1.04325 1.02205 1.48094 1.07210 1.04547 1.76581 1.20089 1.02317 0.87472 0.84456 1.26373 0.85411 0.84224 0.97913 1.73573 1.23518 1.28178 1.02879 1.22073 0.79102 0.78846 0.89563 1.91185 1.44577 1.64960 1.33938 1.85242 1.43403 1.64039 1.18269 1.42498 1.26625 1.44016 1.03886 0.67967 1.21527 0.88563 0.85221 0.74437 1.90764 1.13897 1.86675 1.46080 1.21896 1.00411 0.91341 1.03672 1.21497 0.96779 0.93340 1.01951 1.19130 0.95431 0.89985 0.97073 1.21313 0.93336 0.90914 1.49962 0.92459 1.25011 0.95124 0.98997 0.95353 1.69965 1.12511 1.19970 1.51374 0.86540 0.81670 0.82373 0.77504 1.19619 1.21048 1.21048 0.92643 0.89294 0.90828 0.84734 0.86916 0.89053 0.89321 0.92517 0.92505 0.96602 0.96645 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.28 59.85 0.62 0.95 16 2 N -0.63 -5.39 2.86 -182.95 -0.52 -5.91 16 3 C 0.18 1.13 6.07 -5.19 -0.03 1.10 16 4 C 0.33 2.92 7.81 -155.65 -1.22 1.70 16 5 N -0.52 -7.72 11.55 -14.52 -0.17 -7.89 16 6 C 0.55 8.53 9.62 53.45 0.51 9.04 16 7 O -0.47 -9.03 18.07 -19.16 -0.35 -9.38 16 8 O -0.09 -0.91 11.35 -7.39 -0.08 -0.99 16 9 N -0.50 -2.91 6.79 32.13 0.22 -2.69 16 10 H 0.47 0.11 8.96 -40.82 -0.37 -0.25 16 11 C 0.51 7.27 7.67 -10.98 -0.08 7.19 16 12 O -0.50 -9.30 15.56 5.55 0.09 -9.21 16 13 C -0.13 -2.01 4.25 -27.88 -0.12 -2.13 16 14 C -0.10 -2.05 4.44 -26.73 -0.12 -2.16 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.46 6.44 -51.93 -0.33 0.12 16 26 H 0.07 0.07 7.89 -51.92 -0.41 -0.34 16 27 H 0.13 1.06 7.42 -51.93 -0.39 0.68 16 28 H 0.11 0.05 7.89 -51.93 -0.41 -0.36 16 29 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 30 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -40.55 310.81 -5.77 -46.32 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: -4.36 Total: -8.20 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.99 Total: 2.39 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.26 Total: -42.64 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.34 Total: -19.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -40.55 -5.77 -46.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143360765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.990 kcal (2) G-P(sol) polarization free energy of solvation -40.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds