Wall clock time and date at job start Mon Mar 30 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00249 * 2 1 4 4 C 1.50699 * 109.47248 * 270.00052 * 3 2 1 5 5 N 1.31700 * 126.18263 * 275.18945 * 4 3 2 6 6 C 1.34346 * 105.81682 * 180.22685 * 5 4 3 7 7 O 1.21897 * 126.56514 * 179.77935 * 6 5 4 8 8 O 1.34146 * 106.86491 * 359.75336 * 6 5 4 9 9 N 1.21340 * 109.54848 * 359.97438 * 8 6 5 10 10 H 0.97001 * 124.93126 * 179.97438 * 9 8 6 11 11 C 1.34780 * 119.99485 * 180.02562 * 2 1 3 12 12 O 1.21284 * 119.99827 * 180.02562 * 11 2 1 13 13 C 1.50700 * 120.00043 * 359.97438 * 11 2 1 14 14 C 1.53003 * 109.46777 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46721 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47036 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00069 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00021 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99849 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47006 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47243 * 119.99912 * 20 18 16 23 23 H 1.48496 * 109.46667 * 239.99419 * 20 18 16 24 24 H 1.09000 * 109.47385 * 89.99138 * 1 2 3 25 25 H 1.08993 * 109.47616 * 209.99748 * 1 2 3 26 26 H 1.09009 * 109.46821 * 329.99674 * 1 2 3 27 27 H 1.09000 * 109.46889 * 150.00278 * 3 2 1 28 28 H 1.08993 * 109.47134 * 30.00859 * 3 2 1 29 29 H 1.08998 * 109.46897 * 300.00163 * 13 11 2 30 30 H 1.09000 * 109.47252 * 60.00066 * 13 11 2 31 31 H 1.08998 * 109.47414 * 299.99692 * 14 13 11 32 32 H 1.09000 * 109.47302 * 59.99942 * 14 13 11 33 33 H 1.09005 * 109.46734 * 299.99429 * 15 14 13 34 34 H 1.09000 * 109.47533 * 59.99773 * 15 14 13 35 35 H 0.96997 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.4498 1.3204 -2.1859 6 6 3.2792 1.9552 -3.3575 7 8 3.9978 1.8740 -4.3388 8 8 2.1665 2.6952 -3.2408 9 7 1.6935 2.5454 -2.1335 10 1 0.8872 2.9774 -1.8107 11 6 2.1388 -1.1673 -0.0005 12 8 3.3516 -1.1674 -0.0001 13 6 1.3852 -2.4723 -0.0005 14 6 2.3794 -3.6353 -0.0005 15 6 1.6143 -4.9603 -0.0012 16 6 2.5935 -6.1058 -0.0005 17 1 3.6553 -5.9085 -0.0002 18 6 2.1338 -7.4057 -0.0015 19 7 0.8408 -7.6459 -0.0024 20 14 3.3477 -8.8256 -0.0014 21 1 4.7335 -8.2921 -0.0009 22 1 3.1365 -9.6573 1.2105 23 1 3.1378 -9.6561 -1.2144 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3634 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1383 0.5138 28 1 1.6086 2.0283 0.5139 29 1 0.7589 -2.5302 0.8897 30 1 0.7582 -2.5298 -0.8903 31 1 3.0060 -3.5776 -0.8905 32 1 3.0061 -3.5776 0.8894 33 1 0.9874 -5.0182 0.8887 34 1 0.9878 -5.0178 -0.8913 35 1 0.5175 -8.5604 -0.0027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143360765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:23 Heat of formation + Delta-G solvation = -31.734157 kcal Electronic energy + Delta-G solvation = -20131.410027 eV Core-core repulsion = 16746.645335 eV Total energy + Delta-G solvation = -3384.764692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.71825 -41.00610 -39.37436 -37.72083 -36.20978 -36.10298 -34.06545 -33.58836 -30.67325 -29.06948 -27.30421 -25.73772 -25.00439 -23.60267 -22.14942 -21.13175 -20.16061 -19.63122 -18.51528 -18.02414 -17.88395 -17.31483 -17.06839 -16.74662 -16.44054 -15.76712 -14.99146 -14.77223 -14.59409 -14.19321 -13.87836 -13.75040 -13.51027 -13.23418 -13.08345 -12.91227 -12.69307 -12.61459 -12.48886 -12.29464 -11.84877 -11.53845 -11.44587 -11.22025 -10.74143 -10.53683 -10.36459 -9.96259 -8.20181 -6.29269 -0.26593 0.71401 1.39022 1.40158 1.46438 1.53652 1.60443 2.00706 2.13478 2.42234 2.87623 3.13079 3.61251 3.70381 4.14175 4.24004 4.25158 4.38286 4.53406 4.57154 4.74492 4.81104 4.98962 5.07800 5.14260 5.20807 5.43122 5.54914 5.56470 5.77245 5.88013 6.18505 6.24388 6.30729 6.77561 6.86128 7.16518 7.39422 8.91373 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003531 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.898418 B = 7928.797943 C = 8465.830930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.613 5.613 3 C 0.181 3.819 4 C 0.348 3.652 5 N -0.580 5.580 6 C 0.548 3.452 7 O -0.528 6.528 8 O -0.077 6.077 9 N -0.463 5.463 10 H 0.496 0.504 11 C 0.512 3.488 12 O -0.558 6.558 13 C -0.126 4.126 14 C -0.086 4.086 15 C 0.027 3.973 16 C -0.548 4.548 17 H 0.048 0.952 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.277 1.277 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.190 0.810 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.007 0.993 34 H -0.002 1.002 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 25.746 4.407 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.348 5.348 3 C 0.056 3.944 4 C 0.077 3.923 5 N -0.344 5.344 6 C 0.298 3.702 7 O -0.413 6.413 8 O -0.098 6.098 9 N -0.132 5.132 10 H 0.356 0.644 11 C 0.301 3.699 12 O -0.434 6.434 13 C -0.166 4.166 14 C -0.124 4.124 15 C -0.010 4.010 16 C -0.586 4.586 17 H 0.066 0.934 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.202 1.202 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.136 0.864 28 H 0.207 0.793 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.114 25.313 3.643 26.830 hybrid contribution 0.027 -0.545 -0.719 0.903 sum -8.087 24.768 2.925 26.218 Atomic orbital electron populations 1.22376 0.75381 1.06837 1.03473 1.47943 1.08967 1.03674 1.74229 1.20640 1.03045 0.87893 0.82781 1.26733 0.84002 0.83301 0.98262 1.73542 1.26809 1.30346 1.03657 1.22069 0.79620 0.79264 0.89281 1.91116 1.46961 1.67351 1.35879 1.85214 1.41947 1.62726 1.19879 1.42720 1.26310 1.42270 1.01936 0.64396 1.21229 0.87733 0.86619 0.74286 1.90756 1.16058 1.87651 1.48977 1.21694 0.99103 0.90150 1.05614 1.21191 0.97212 0.93918 1.00071 1.19011 0.94813 0.91564 0.95601 1.21732 0.93609 0.92663 1.50559 0.93380 1.25848 0.97026 1.01654 0.94718 1.70053 1.14100 1.20927 1.51704 0.85500 0.79190 0.78946 0.78052 1.19484 1.19778 1.20246 0.91934 0.89765 0.85579 0.86430 0.79308 0.86365 0.88098 0.95081 0.93730 0.97480 0.98329 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.28 127.77 1.31 1.55 16 2 N -0.61 -8.34 2.86 -851.13 -2.43 -10.77 16 3 C 0.18 1.48 6.07 85.63 0.52 2.00 16 4 C 0.35 5.15 7.81 138.21 1.08 6.23 16 5 N -0.58 -17.19 11.55 -431.18 -4.98 -22.18 16 6 C 0.55 17.13 9.62 130.00 1.25 18.38 16 7 O -0.53 -21.66 18.07 18.13 0.33 -21.34 16 8 O -0.08 -1.44 11.35 93.22 1.06 -0.38 16 9 N -0.46 -3.59 6.79 -53.62 -0.36 -3.95 16 10 H 0.50 -2.63 8.96 -92.71 -0.83 -3.46 16 11 C 0.51 13.97 7.67 87.66 0.67 14.64 16 12 O -0.56 -21.07 15.56 -3.04 -0.05 -21.11 16 13 C -0.13 -3.71 4.25 29.85 0.13 -3.58 16 14 C -0.09 -3.71 4.44 30.60 0.14 -3.58 16 15 C 0.03 1.42 4.97 29.85 0.15 1.57 16 16 C -0.55 -32.37 9.11 25.60 0.23 -32.13 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 20 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.08 0.49 6.44 -2.39 -0.02 0.48 16 26 H 0.13 -0.74 7.89 -2.38 -0.02 -0.76 16 27 H 0.12 1.58 7.42 -2.39 -0.02 1.56 16 28 H 0.19 -1.30 7.89 -2.39 -0.02 -1.32 16 29 H 0.12 2.81 7.40 -2.39 -0.02 2.79 16 30 H 0.10 2.71 8.11 -2.39 -0.02 2.69 16 31 H 0.03 1.46 8.10 -2.39 -0.02 1.44 16 32 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 33 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -96.93 310.81 2.11 -94.82 By element: Atomic # 1 Polarization: -13.20 SS G_CDS: 0.29 Total: -12.91 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.94 Total: 5.87 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -7.49 Total: -92.52 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: 1.34 Total: -42.83 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -96.93 2.11 -94.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143360765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.084 kcal (2) G-P(sol) polarization free energy of solvation -96.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds