Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36936 * 119.99757 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48506 * 109.46902 * 240.00248 * 19 17 15 23 23 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 25 25 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 26 26 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 27 27 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 28 28 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 29 29 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 30 30 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 31 31 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 32 32 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 33 33 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 34 34 H 0.97000 * 120.00386 * 359.97438 * 14 13 12 35 35 H 0.96996 * 120.00458 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 7 5.5634 1.0030 -7.2263 15 6 6.5429 0.9200 -8.1796 16 1 7.5785 0.8387 -7.8842 17 6 6.2046 0.9392 -9.5258 18 7 4.9425 1.0367 -9.8859 19 14 7.5408 0.8251 -10.8263 20 1 8.8669 0.7239 -10.1659 21 1 7.3124 -0.3778 -11.6664 22 1 7.5051 2.0395 -11.6804 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 6.5911 0.9310 -1.1214 29 1 5.9373 0.9934 -3.2730 30 1 3.9939 0.2471 -5.1816 31 1 4.1364 2.0214 -5.1906 32 1 6.5767 1.8235 -5.5831 33 1 6.4343 0.0492 -5.5742 34 1 4.6333 1.0757 -7.4917 35 1 4.7061 1.0504 -10.8265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147551702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -3.379099 kcal Electronic energy + Delta-G solvation = -19669.883308 eV Core-core repulsion = 16286.348183 eV Total energy + Delta-G solvation = -3383.535125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.24221 -39.55337 -38.09965 -35.78989 -34.25247 -33.99296 -32.44024 -31.14504 -28.68558 -27.85333 -25.99714 -24.92736 -23.36341 -21.73219 -21.45248 -20.61457 -18.53951 -18.08022 -17.32786 -16.91596 -16.51051 -16.07487 -15.74728 -15.38294 -15.26870 -14.65959 -14.33107 -13.81615 -13.68909 -13.22168 -12.97968 -12.74981 -12.62585 -11.80145 -11.72196 -11.54863 -11.17397 -10.87381 -10.86264 -10.46129 -10.26856 -10.09672 -10.03997 -9.90390 -9.78990 -9.08641 -8.91993 -7.04100 -5.83558 -3.14658 0.80367 1.35929 2.61452 3.03800 3.12576 3.39676 3.44439 3.46909 3.47631 3.84618 4.15163 4.54118 4.54742 4.74317 4.93060 4.98974 5.13116 5.19736 5.30491 5.44090 5.45590 5.47392 5.54955 5.70487 5.88182 6.06531 6.35466 6.62839 6.63688 6.81534 7.41889 7.62616 7.85252 8.11847 8.33779 9.45357 9.99376 10.33857 11.38996 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.003153 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.811575 B = 8877.693094 C = 9655.419673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.340 5.340 6 O 0.106 5.894 7 C -0.009 4.009 8 C -0.233 4.233 9 C 0.591 3.409 10 O -0.524 6.524 11 N -0.714 5.714 12 C 0.112 3.888 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.245 4.245 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 H 0.089 0.911 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.230 0.770 29 H 0.398 0.602 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 0.607 21.888 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.099 4.099 5 N -0.045 5.045 6 O 0.042 5.958 7 C -0.091 4.091 8 C -0.240 4.240 9 C 0.376 3.624 10 O -0.401 6.401 11 N -0.365 5.365 12 C -0.011 4.011 13 C 0.016 3.984 14 N -0.375 5.375 15 C -0.376 4.376 16 H 0.091 0.909 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 H 0.107 0.893 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.246 0.754 29 H 0.232 0.768 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.220 0.780 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.809 0.508 22.849 23.026 hybrid contribution 0.705 0.110 -1.632 1.781 sum -2.104 0.618 21.217 21.330 Atomic orbital electron populations 1.22774 0.79982 1.03167 1.00320 1.87909 1.20384 1.26232 1.95532 1.20574 0.84122 0.86252 1.02613 1.24366 0.97479 1.01276 0.86733 1.73672 0.89526 1.17777 1.23530 1.84586 1.21620 1.66308 1.23264 1.26468 1.00398 0.98400 0.83815 1.22405 0.92757 1.13093 0.95787 1.16772 0.85628 0.77172 0.82853 1.90809 1.18319 1.49210 1.81775 1.45737 1.09375 1.74398 1.07027 1.21653 0.99114 1.02932 0.77443 1.20757 0.93077 0.98473 0.86058 1.42188 1.07575 1.89200 0.98510 1.19226 0.88790 1.43156 0.86427 0.90944 1.24787 0.96309 1.02535 0.97149 1.69671 1.15263 1.56886 1.15950 0.86080 0.80722 0.77286 0.81830 1.20487 1.21743 1.21755 0.89267 0.93983 0.93284 0.91400 0.89194 0.75353 0.76801 0.90891 0.90903 0.95709 0.95713 0.77963 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.00 10.69 -35.23 -0.38 -5.38 16 3 C 0.14 1.68 6.20 36.01 0.22 1.90 16 4 C 0.06 0.81 7.21 -79.77 -0.58 0.24 16 5 N -0.34 -4.12 12.01 34.78 0.42 -3.71 16 6 O 0.11 1.03 11.06 18.64 0.21 1.24 16 7 C -0.01 -0.07 11.85 30.41 0.36 0.29 16 8 C -0.23 -2.72 6.47 -102.89 -0.67 -3.39 16 9 C 0.59 8.35 7.81 -12.53 -0.10 8.26 16 10 O -0.52 -9.33 15.70 5.27 0.08 -9.25 16 11 N -0.71 -9.00 5.55 -61.39 -0.34 -9.34 16 12 C 0.11 1.81 5.79 -4.04 -0.02 1.78 16 13 C 0.14 2.67 6.37 -4.04 -0.03 2.65 16 14 N -0.73 -18.02 5.60 -59.91 -0.34 -18.35 16 15 C -0.25 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.09 1.10 7.11 -51.93 -0.37 0.73 16 28 H 0.23 0.62 7.68 -52.49 -0.40 0.22 16 29 H 0.40 3.57 7.66 -40.82 -0.31 3.25 16 30 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.39 10.13 7.67 -40.82 -0.31 9.82 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -34.83 314.13 -4.18 -39.01 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.33 Total: 5.35 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.06 Total: 5.90 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.47 Total: -58.51 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.09 Total: -13.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.83 -4.18 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147551702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.627 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds