Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36936 * 119.99757 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31614 * 120.00323 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48506 * 109.46902 * 240.00248 * 19 17 15 23 23 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 25 25 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 26 26 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 27 27 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 28 28 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 29 29 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 30 30 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 31 31 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 32 32 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 33 33 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 34 34 H 0.97000 * 120.00386 * 359.97438 * 14 13 12 35 35 H 0.96996 * 120.00458 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 7 5.5634 1.0030 -7.2263 15 6 6.5429 0.9200 -8.1796 16 1 7.5785 0.8387 -7.8842 17 6 6.2046 0.9392 -9.5258 18 7 4.9425 1.0367 -9.8859 19 14 7.5408 0.8251 -10.8263 20 1 8.8669 0.7239 -10.1659 21 1 7.3124 -0.3778 -11.6664 22 1 7.5051 2.0395 -11.6804 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 6.5911 0.9310 -1.1214 29 1 5.9373 0.9934 -3.2730 30 1 3.9939 0.2471 -5.1816 31 1 4.1364 2.0214 -5.1906 32 1 6.5767 1.8235 -5.5831 33 1 6.4343 0.0492 -5.5742 34 1 4.6333 1.0757 -7.4917 35 1 4.7061 1.0504 -10.8265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147551702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -31.488554 kcal Electronic energy + Delta-G solvation = -19671.102226 eV Core-core repulsion = 16286.348183 eV Total energy + Delta-G solvation = -3384.754042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.09161 -40.70197 -38.98335 -37.32009 -35.57919 -35.11569 -33.56650 -32.77945 -29.77921 -29.17246 -26.84834 -26.20553 -24.95796 -23.10894 -22.43296 -21.66493 -19.57853 -19.12963 -18.92787 -17.92185 -17.36768 -17.13963 -16.77180 -16.64503 -16.48717 -16.22129 -15.45577 -15.17003 -15.15835 -14.78979 -14.50645 -13.60328 -13.39529 -13.11972 -13.02929 -12.69641 -12.59111 -12.57026 -12.46372 -12.02398 -11.85209 -11.38044 -11.30387 -10.98791 -10.87906 -10.78206 -10.20223 -9.04308 -7.95314 -5.26311 0.02614 0.48038 1.50488 1.51498 1.61478 1.75377 2.04335 2.17775 2.57729 2.64714 3.01821 3.34620 3.39720 3.70847 3.84835 4.01971 4.10959 4.20678 4.24140 4.25108 4.44656 4.49693 4.58882 4.61557 4.66244 4.78481 5.02046 5.16229 5.30234 5.51592 5.99837 6.25806 6.42081 7.06273 7.09751 7.32218 8.04658 8.26361 9.28617 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.003153 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.811575 B = 8877.693094 C = 9655.419673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.140 3.860 4 C 0.043 3.957 5 N -0.356 5.356 6 O 0.114 5.886 7 C 0.039 3.961 8 C -0.267 4.267 9 C 0.593 3.407 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.129 3.871 13 C 0.148 3.852 14 N -0.749 5.749 15 C -0.244 4.244 16 H 0.085 0.915 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.295 1.295 22 H -0.295 1.295 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.286 0.714 29 H 0.419 0.581 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.374 0.626 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 0.449 23.199 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.063 3.937 4 C -0.119 4.119 5 N -0.061 5.061 6 O 0.050 5.950 7 C -0.042 4.042 8 C -0.275 4.275 9 C 0.380 3.620 10 O -0.450 6.450 11 N -0.350 5.350 12 C 0.005 3.995 13 C 0.022 3.978 14 N -0.392 5.392 15 C -0.376 4.376 16 H 0.103 0.897 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.806 3.194 20 H -0.184 1.184 21 H -0.223 1.223 22 H -0.222 1.222 23 H 0.118 0.882 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.301 0.699 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.205 0.795 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.250 0.346 24.234 24.238 hybrid contribution -0.031 0.151 -1.920 1.926 sum -0.282 0.498 22.314 22.321 Atomic orbital electron populations 1.22966 0.78388 1.04231 1.01189 1.87856 1.22309 1.27054 1.95694 1.20597 0.84327 0.85959 1.02798 1.24604 0.98020 1.01884 0.87425 1.73676 0.90189 1.18516 1.23687 1.84573 1.20659 1.65540 1.24185 1.27377 1.00797 0.93442 0.82612 1.22142 0.94426 1.16823 0.94150 1.17054 0.85015 0.75992 0.83902 1.90789 1.20295 1.51334 1.82622 1.45416 1.10428 1.73943 1.05223 1.21207 0.97692 1.01465 0.79181 1.20872 0.94147 0.99619 0.83201 1.42445 1.06633 1.89245 1.00871 1.19693 0.89796 1.40997 0.87103 0.89664 1.25653 0.98345 1.03488 0.99512 1.69835 1.17392 1.59097 1.15858 0.85021 0.78932 0.76504 0.78952 1.18433 1.22261 1.22223 0.88166 0.91923 0.93583 0.89667 0.90460 0.69912 0.74271 0.92685 0.92398 0.93921 0.94103 0.79484 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.89 10.69 -148.98 -1.59 -12.48 16 3 C 0.14 3.38 6.20 71.24 0.44 3.83 16 4 C 0.04 1.06 7.21 45.16 0.33 1.38 16 5 N -0.36 -8.07 12.01 -44.78 -0.54 -8.61 16 6 O 0.11 1.87 11.06 76.93 0.85 2.72 16 7 C 0.04 0.46 11.85 67.61 0.80 1.26 16 8 C -0.27 -5.78 6.47 -18.74 -0.12 -5.90 16 9 C 0.59 16.27 7.81 86.66 0.68 16.95 16 10 O -0.57 -20.81 15.70 -4.04 -0.06 -20.88 16 11 N -0.70 -16.14 5.55 -466.39 -2.59 -18.73 16 12 C 0.13 4.08 5.79 86.38 0.50 4.58 16 13 C 0.15 5.19 6.37 86.38 0.55 5.74 16 14 N -0.75 -36.58 5.60 -343.45 -1.92 -38.50 16 15 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 16 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 18 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 19 Si 0.98 44.82 29.55 68.60 2.03 46.85 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 2.01 7.11 -2.39 -0.02 1.99 16 28 H 0.29 -0.29 7.68 -2.91 -0.02 -0.31 16 29 H 0.42 5.87 7.66 -92.71 -0.71 5.16 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.37 19.92 7.67 -92.71 -0.71 19.21 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -77.19 314.13 1.90 -75.30 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.29 Total: 19.65 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.73 Total: 13.45 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -4.77 Total: -124.61 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.80 Total: -30.64 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.19 1.90 -75.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147551702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.809 kcal (2) G-P(sol) polarization free energy of solvation -77.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds