Wall clock time and date at job start Mon Mar 30 2020 00:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00014 * 2 1 4 4 C 1.53002 * 109.46685 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46851 * 179.97438 * 4 3 2 6 6 N 1.29944 * 126.28735 * 89.97778 * 5 4 3 7 7 O 1.21308 * 110.25054 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.80970 * 359.97438 * 7 6 5 9 9 C 1.50697 * 126.54637 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47293 * 270.02369 * 9 8 7 11 11 C 1.46499 * 120.00136 * 270.00491 * 10 9 8 12 12 C 1.34784 * 119.99893 * 90.00297 * 10 9 8 13 13 O 1.21682 * 119.99954 * 359.97438 * 12 10 9 14 14 C 1.46368 * 119.99916 * 179.72943 * 12 10 9 15 15 H 1.07998 * 120.00437 * 359.97438 * 14 12 10 16 16 C 1.40055 * 119.99853 * 179.97438 * 14 12 10 17 17 N 1.30662 * 119.99894 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99877 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47029 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47165 * 120.00059 * 18 16 14 21 21 H 1.48495 * 109.46978 * 240.00192 * 18 16 14 22 22 N 1.31130 * 106.89791 * 0.23207 * 8 7 6 23 23 H 1.08996 * 109.47252 * 300.00754 * 1 2 3 24 24 H 1.09004 * 109.47070 * 60.00286 * 1 2 3 25 25 H 1.08993 * 109.47608 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46861 * 59.99926 * 3 2 1 27 27 H 1.08994 * 109.47085 * 299.99895 * 3 2 1 28 28 H 1.09005 * 109.47240 * 60.00311 * 4 3 2 29 29 H 1.08994 * 109.47516 * 299.99928 * 4 3 2 30 30 H 1.08997 * 109.46951 * 150.02684 * 9 8 7 31 31 H 1.08998 * 109.47681 * 30.02738 * 9 8 7 32 32 H 1.08999 * 109.47256 * 269.99572 * 11 10 9 33 33 H 1.08998 * 109.47416 * 29.99674 * 11 10 9 34 34 H 1.09008 * 109.47058 * 150.00274 * 11 10 9 35 35 H 0.97000 * 120.00244 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0000 6 7 4.4605 3.2646 1.0471 7 8 4.9346 4.3296 0.7115 8 6 4.9715 4.4088 -0.6221 9 6 5.4865 5.5661 -1.4384 10 7 4.3913 6.5021 -1.7041 11 6 3.5653 6.3417 -2.9033 12 6 4.1436 7.5108 -0.8451 13 8 4.8293 7.6438 0.1512 14 6 3.0531 8.4495 -1.1136 15 1 2.4472 8.3341 -2.0001 16 6 2.7953 9.4973 -0.2208 17 7 3.5280 9.6366 0.8521 18 14 1.4040 10.6957 -0.5638 19 1 0.7312 10.3227 -1.8340 20 1 0.4227 10.6467 0.5496 21 1 1.9525 12.0708 -0.6801 22 7 4.4687 3.2895 -1.0845 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8575 0.6435 -0.8892 29 1 3.8568 0.6438 0.8908 30 1 5.8850 5.1957 -2.3829 31 1 6.2755 6.0773 -0.8868 32 1 4.0046 6.9068 -3.7253 33 1 3.5169 5.2866 -3.1728 34 1 2.5597 6.7124 -2.7041 35 1 3.3498 10.3625 1.4703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150940063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:18 Heat of formation + Delta-G solvation = -36.183199 kcal Electronic energy + Delta-G solvation = -20444.241253 eV Core-core repulsion = 17059.283636 eV Total energy + Delta-G solvation = -3384.957617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.63357 -39.79151 -39.11435 -37.18737 -36.21918 -34.62952 -34.25345 -32.09848 -29.90898 -27.97680 -27.63216 -26.51431 -25.38971 -24.25349 -22.49922 -21.20783 -19.20335 -18.54006 -18.45253 -17.70589 -17.48922 -17.16980 -16.50619 -16.39182 -16.09166 -15.95082 -14.93704 -14.76450 -14.39906 -14.25227 -13.72881 -13.52252 -13.41742 -13.18717 -13.12433 -12.90699 -12.77703 -12.58879 -12.49008 -12.24781 -12.20868 -12.10548 -11.98326 -11.16222 -10.96114 -10.78240 -9.85837 -9.39009 -8.31539 -6.87375 0.00841 1.03142 1.39290 1.41032 1.57888 1.81240 2.22853 2.27266 2.46359 2.76738 2.86203 3.14708 3.58458 3.82326 3.89278 4.02803 4.18764 4.23719 4.46240 4.47235 4.48637 4.53315 4.58191 4.72694 4.80980 4.81146 4.89131 4.93199 5.05352 5.36664 5.63072 6.01150 6.05021 6.22916 6.85986 7.04302 7.27268 8.39593 8.63234 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.004747 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.603396 B = 5897.270527 C = 6542.562514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.075 3.925 4 C -0.017 4.017 5 C 0.170 3.830 6 N -0.409 5.409 7 O 0.056 5.944 8 C 0.188 3.812 9 C 0.210 3.790 10 N -0.640 5.640 11 C 0.097 3.903 12 C 0.536 3.464 13 O -0.615 6.615 14 C -0.564 4.564 15 H 0.096 0.904 16 C 0.030 3.970 17 N -0.817 5.817 18 Si 0.992 3.008 19 H -0.244 1.244 20 H -0.274 1.274 21 H -0.268 1.268 22 N -0.483 5.483 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -13.582 -7.273 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C -0.003 4.003 4 C -0.056 4.056 5 C -0.103 4.103 6 N -0.122 5.122 7 O 0.004 5.996 8 C -0.034 4.034 9 C 0.083 3.917 10 N -0.377 5.377 11 C -0.045 4.045 12 C 0.343 3.657 13 O -0.501 6.501 14 C -0.600 4.600 15 H 0.114 0.886 16 C -0.186 4.186 17 N -0.446 5.446 18 Si 0.812 3.188 19 H -0.167 1.167 20 H -0.199 1.199 21 H -0.192 1.192 22 N -0.219 5.219 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.172 0.828 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.965 -14.122 -6.092 15.883 hybrid contribution -0.535 1.066 0.363 1.246 sum -4.499 -13.056 -5.729 14.951 Atomic orbital electron populations 1.22992 0.78939 1.04408 1.00821 1.87778 1.21839 1.26827 1.95598 1.22228 0.92176 0.85243 1.00690 1.19783 0.93230 0.85457 1.07139 1.26106 1.00213 1.00434 0.83584 1.74636 1.17213 0.94907 1.25469 1.85382 1.58480 1.29399 1.26374 1.30392 0.94463 0.96937 0.81608 1.19922 0.90451 0.83008 0.98290 1.48031 1.34755 1.28666 1.26292 1.21684 0.95217 1.01587 0.86048 1.18758 0.84990 0.80506 0.81496 1.90596 1.53186 1.75809 1.30519 1.21554 1.15934 1.12056 1.10422 0.88628 1.26960 0.98987 0.99396 0.93253 1.70177 1.36335 1.28110 1.10000 0.85038 0.76937 0.77154 0.79660 1.16672 1.19888 1.19240 1.71882 1.17510 1.03201 1.29273 0.93666 0.93150 0.87280 0.93894 0.92606 0.85996 0.87315 0.82836 0.88367 0.91834 0.90706 0.91967 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.99 10.70 -148.98 -1.59 -10.58 16 3 C 0.07 1.81 5.92 71.98 0.43 2.23 16 4 C -0.02 -0.43 6.21 29.85 0.19 -0.24 16 5 C 0.17 5.65 7.47 138.46 1.03 6.68 16 6 N -0.41 -16.16 12.16 -60.29 -0.73 -16.90 16 7 O 0.06 2.43 11.31 74.81 0.85 3.28 16 8 C 0.19 7.11 8.10 88.38 0.72 7.82 16 9 C 0.21 7.39 6.03 85.63 0.52 7.90 16 10 N -0.64 -26.84 2.86 -856.28 -2.45 -29.28 16 11 C 0.10 3.15 10.14 127.77 1.30 4.45 16 12 C 0.54 29.44 7.61 86.36 0.66 30.10 16 13 O -0.62 -39.23 14.60 -4.29 -0.06 -39.29 16 14 C -0.56 -30.40 8.74 24.83 0.22 -30.18 16 15 H 0.10 4.58 6.00 -2.91 -0.02 4.56 16 16 C 0.03 1.61 5.50 85.31 0.47 2.08 16 17 N -0.82 -48.78 11.83 21.84 0.26 -48.53 16 18 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 19 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 N -0.48 -16.51 11.55 -303.18 -3.50 -20.01 16 23 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.15 3.85 8.07 -2.39 -0.02 3.83 16 31 H 0.10 3.73 7.42 -2.39 -0.02 3.71 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.06 2.17 6.10 -2.38 -0.01 2.15 16 35 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 Total: -1.00 -75.43 311.71 2.67 -72.76 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.11 Total: 14.38 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 6.77 Total: 32.49 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -6.42 Total: -114.72 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.81 Total: -46.60 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -75.43 2.67 -72.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150940063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.579 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds