Wall clock time and date at job start Mon Mar 30 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 O 1.20920 * 124.56386 * 2 1 4 4 C 1.34173 * 112.18882 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38523 * 180.02562 * 4 3 2 6 6 O 1.21493 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99711 * 0.02659 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72353 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46748 * 180.02562 * 10 9 8 12 12 C 1.36939 * 119.99838 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99976 * 179.97438 * 12 11 10 15 15 N 1.31612 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99973 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46997 * 60.00396 * 16 14 12 18 18 H 1.48501 * 109.46950 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47074 * 300.00402 * 16 14 12 20 20 C 1.36321 * 107.22924 * 0.26827 * 4 3 2 21 21 C 1.34828 * 124.56435 * 180.02562 * 2 1 3 22 22 O 1.21973 * 127.14921 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.46976 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46898 * 120.01855 * 1 2 3 25 25 H 1.08994 * 109.46694 * 240.02016 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 28 28 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 29 29 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 30 30 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 31 31 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 32 32 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 33 33 H 0.96992 * 119.99973 * 359.97438 * 11 10 9 34 34 H 0.97003 * 120.00466 * 180.02562 * 15 14 12 35 35 H 1.07993 * 127.99285 * 179.71426 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 0.0006 5 6 4.5761 1.6852 0.0013 6 8 5.7265 1.2945 0.0012 7 7 4.3133 3.0071 0.0019 8 6 5.4149 3.9728 0.0087 9 6 4.8475 5.3938 0.0151 10 6 5.9980 6.4023 0.0228 11 7 5.4546 7.7628 0.0295 12 6 6.3020 8.8385 0.0366 13 1 7.3709 8.6838 0.0368 14 6 5.7872 10.1276 0.0423 15 7 4.4846 10.3161 0.0416 16 14 6.9432 11.5950 0.0527 17 1 7.8020 11.5571 -1.1583 18 1 6.1497 12.8502 0.0583 19 1 7.7969 11.5440 1.2667 20 6 3.5770 -0.6501 -0.0052 21 6 2.2300 -1.1103 -0.0005 22 8 1.8473 -2.2684 -0.0006 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5141 -0.8898 25 1 -0.3632 -0.5135 0.8901 26 1 3.3948 3.3191 0.0023 27 1 6.0254 3.8215 0.8990 28 1 6.0284 3.8306 -0.8809 29 1 4.2371 5.5451 -0.8752 30 1 4.2341 5.5361 0.9048 31 1 6.6081 6.2508 0.9132 32 1 6.6118 6.2602 -0.8667 33 1 4.4947 7.9017 0.0282 34 1 4.1248 11.2169 0.0452 35 1 4.4813 -1.2404 -0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157127583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:15 Heat of formation + Delta-G solvation = 19.578409 kcal Electronic energy + Delta-G solvation = -19408.176681 eV Core-core repulsion = 16025.637069 eV Total energy + Delta-G solvation = -3382.539613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.46461 -40.05446 -38.48011 -36.32992 -34.75774 -34.52781 -32.59741 -32.13295 -29.91351 -28.36352 -25.71809 -24.06994 -23.63466 -22.43548 -21.39761 -20.49969 -19.04609 -18.76696 -17.63614 -17.00324 -16.51474 -15.94594 -15.66054 -15.27128 -14.73092 -14.68594 -14.20309 -14.13767 -14.01328 -13.74953 -13.35281 -13.33944 -13.12044 -12.64915 -11.81171 -11.17384 -11.00451 -10.95633 -10.74410 -10.71316 -10.43666 -10.38501 -10.13220 -9.76616 -9.44213 -8.93050 -8.90065 -6.99919 -5.82431 -3.11819 0.17928 1.19769 2.22646 2.40202 2.65751 3.03923 3.41303 3.45663 3.46637 4.18306 4.30855 4.53483 4.61659 4.65921 4.70125 4.93802 4.95479 5.13993 5.42950 5.45771 5.47700 5.51527 5.70663 5.90359 6.04824 6.09546 6.22255 6.68757 6.73003 6.91110 7.24787 7.55185 7.60536 7.64784 8.36409 9.47648 10.03754 10.38143 11.40437 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044403 B = 0.002655 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.434698 B =10543.819683 C =11143.184436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.453 5.453 3 O -0.003 6.003 4 C 0.033 3.967 5 C 0.599 3.401 6 O -0.496 6.496 7 N -0.706 5.706 8 C 0.119 3.881 9 C -0.139 4.139 10 C 0.157 3.843 11 N -0.734 5.734 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.237 4.237 21 C 0.480 3.520 22 O -0.522 6.522 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.409 0.591 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -19.436 -0.110 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.216 5.216 3 O -0.015 6.015 4 C -0.025 4.025 5 C 0.381 3.619 6 O -0.371 6.371 7 N -0.357 5.357 8 C -0.004 4.004 9 C -0.178 4.178 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.374 4.374 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.262 4.262 21 C 0.278 3.722 22 O -0.403 6.403 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.244 0.756 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.547 -19.994 -0.110 21.371 hybrid contribution -0.191 1.087 0.008 1.104 sum -7.738 -18.907 -0.103 20.429 Atomic orbital electron populations 1.22157 0.70475 1.05387 1.04810 1.46107 1.05940 0.99822 1.69777 1.84007 1.15245 1.21108 1.81097 1.23483 0.81605 0.96420 1.00978 1.16688 0.85416 0.81522 0.78298 1.90910 1.18221 1.78542 1.49426 1.46055 1.11959 1.04930 1.72751 1.21584 0.88278 0.87173 1.03336 1.21973 1.00399 0.92316 1.03066 1.20515 0.93247 0.85044 0.98363 1.42320 1.06446 0.99371 1.89687 1.19194 0.89877 0.85289 1.42991 0.91101 1.24756 0.95879 0.97476 1.02840 1.69641 1.10080 1.20969 1.57621 0.86238 0.79670 0.82178 0.77928 1.21183 1.21651 1.21187 1.23347 0.99727 0.93361 1.09790 1.18341 0.86695 0.85533 0.81613 1.90973 1.79052 1.15863 1.54389 0.88128 0.89123 0.89124 0.75603 0.90418 0.90409 0.91016 0.91022 0.95929 0.95933 0.78281 0.93402 0.78917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.50 11.18 59.85 0.67 1.17 16 2 N -0.45 -3.95 3.68 -69.77 -0.26 -4.20 16 3 O 0.00 -0.03 10.69 16.82 0.18 0.15 16 4 C 0.03 0.32 7.25 -36.18 -0.26 0.06 16 5 C 0.60 6.50 7.84 -12.16 -0.10 6.40 16 6 O -0.50 -6.91 16.89 5.37 0.09 -6.82 16 7 N -0.71 -6.73 5.55 -61.13 -0.34 -7.07 16 8 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 9 C -0.14 -1.87 5.44 -26.73 -0.15 -2.01 16 10 C 0.16 2.89 6.26 -4.04 -0.03 2.86 16 11 N -0.73 -17.91 5.60 -59.90 -0.34 -18.24 16 12 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 15 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 16 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 C -0.24 -2.46 10.94 -38.69 -0.42 -2.88 16 21 C 0.48 5.56 8.02 -14.66 -0.12 5.44 16 22 O -0.52 -7.71 17.92 4.94 0.09 -7.62 16 23 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.41 3.01 8.28 -40.82 -0.34 2.67 16 27 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.74 7.67 -40.82 -0.31 9.42 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -34.60 315.80 -5.21 -39.81 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.42 Total: 4.15 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.67 Total: 5.07 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.21 Total: -56.49 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.36 Total: -14.29 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.60 -5.21 -39.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157127583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.388 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds