Wall clock time and date at job start Mon Mar 30 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 O 1.20920 * 124.56386 * 2 1 4 4 C 1.34173 * 112.18882 * 179.97438 * 3 2 1 5 5 C 1.48205 * 126.38523 * 180.02562 * 4 3 2 6 6 O 1.21493 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99711 * 0.02659 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72353 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46748 * 180.02562 * 10 9 8 12 12 C 1.36939 * 119.99838 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99976 * 179.97438 * 12 11 10 15 15 N 1.31612 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99973 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46997 * 60.00396 * 16 14 12 18 18 H 1.48501 * 109.46950 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47074 * 300.00402 * 16 14 12 20 20 C 1.36321 * 107.22924 * 0.26827 * 4 3 2 21 21 C 1.34828 * 124.56435 * 180.02562 * 2 1 3 22 22 O 1.21973 * 127.14921 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.46976 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46898 * 120.01855 * 1 2 3 25 25 H 1.08994 * 109.46694 * 240.02016 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 28 28 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 29 29 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 30 30 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 31 31 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 32 32 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 33 33 H 0.96992 * 119.99973 * 359.97438 * 11 10 9 34 34 H 0.97003 * 120.00466 * 180.02562 * 15 14 12 35 35 H 1.07993 * 127.99285 * 179.71426 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 0.0006 5 6 4.5761 1.6852 0.0013 6 8 5.7265 1.2945 0.0012 7 7 4.3133 3.0071 0.0019 8 6 5.4149 3.9728 0.0087 9 6 4.8475 5.3938 0.0151 10 6 5.9980 6.4023 0.0228 11 7 5.4546 7.7628 0.0295 12 6 6.3020 8.8385 0.0366 13 1 7.3709 8.6838 0.0368 14 6 5.7872 10.1276 0.0423 15 7 4.4846 10.3161 0.0416 16 14 6.9432 11.5950 0.0527 17 1 7.8020 11.5571 -1.1583 18 1 6.1497 12.8502 0.0583 19 1 7.7969 11.5440 1.2667 20 6 3.5770 -0.6501 -0.0052 21 6 2.2300 -1.1103 -0.0005 22 8 1.8473 -2.2684 -0.0006 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5141 -0.8898 25 1 -0.3632 -0.5135 0.8901 26 1 3.3948 3.3191 0.0023 27 1 6.0254 3.8215 0.8990 28 1 6.0284 3.8306 -0.8809 29 1 4.2371 5.5451 -0.8752 30 1 4.2341 5.5361 0.9048 31 1 6.6081 6.2508 0.9132 32 1 6.6118 6.2602 -0.8667 33 1 4.4947 7.9017 0.0282 34 1 4.1248 11.2169 0.0452 35 1 4.4813 -1.2404 -0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157127583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:15 Heat of formation + Delta-G solvation = -6.702699 kcal Electronic energy + Delta-G solvation = -19409.316316 eV Core-core repulsion = 16025.637069 eV Total energy + Delta-G solvation = -3383.679247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.25477 -40.97367 -39.38166 -37.59121 -36.07301 -35.40905 -33.78736 -33.41795 -31.44792 -29.12558 -27.08262 -25.22732 -24.61566 -23.74215 -22.60673 -21.46940 -19.88686 -19.52489 -19.10224 -18.27926 -17.48595 -16.91832 -16.67616 -16.36174 -16.14455 -15.75954 -15.38798 -15.26329 -15.05035 -14.82478 -14.67536 -14.26662 -13.87815 -13.67912 -13.29722 -12.78023 -12.62876 -12.44095 -12.11961 -12.05023 -11.86509 -11.72192 -11.34411 -11.14363 -10.91291 -10.32315 -9.70004 -8.99260 -7.95079 -5.23591 -0.63836 0.49989 1.35307 1.49465 1.52003 1.55659 1.58340 1.80077 2.21751 2.57762 3.36873 3.39241 3.63039 3.75384 3.84867 4.11838 4.26488 4.30135 4.32389 4.45527 4.62999 4.68417 4.73561 4.75818 4.79997 4.89064 5.09435 5.35376 5.35690 5.51244 6.09125 6.28230 6.42749 6.74617 6.81244 7.34775 8.10679 8.33092 9.28230 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044403 B = 0.002655 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.434698 B =10543.819683 C =11143.184436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.444 5.444 3 O 0.016 5.984 4 C 0.041 3.959 5 C 0.607 3.393 6 O -0.528 6.528 7 N -0.693 5.693 8 C 0.129 3.871 9 C -0.122 4.122 10 C 0.150 3.850 11 N -0.748 5.748 12 C -0.248 4.248 13 H 0.076 0.924 14 C -0.075 4.075 15 N -0.969 5.969 16 Si 0.972 3.028 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.278 1.278 20 C -0.245 4.245 21 C 0.467 3.533 22 O -0.565 6.565 23 H 0.130 0.870 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.422 0.578 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -19.307 -0.114 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.204 5.204 3 O 0.003 5.997 4 C -0.018 4.018 5 C 0.389 3.611 6 O -0.405 6.405 7 N -0.344 5.344 8 C 0.006 3.994 9 C -0.160 4.160 10 C 0.024 3.976 11 N -0.391 5.391 12 C -0.380 4.380 13 H 0.093 0.907 14 C -0.267 4.267 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.204 1.204 18 H -0.221 1.221 19 H -0.204 1.204 20 C -0.270 4.270 21 C 0.266 3.734 22 O -0.449 6.449 23 H 0.148 0.852 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.259 0.741 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.208 0.792 34 H 0.061 0.939 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.759 -19.867 -0.114 21.328 hybrid contribution -0.162 1.039 0.008 1.052 sum -7.920 -18.827 -0.106 20.426 Atomic orbital electron populations 1.22607 0.67937 1.07639 1.05756 1.46404 1.07124 0.99173 1.67696 1.84033 1.14769 1.20749 1.80120 1.23130 0.81846 0.95723 1.01108 1.16628 0.85090 0.81679 0.77680 1.90904 1.19571 1.79070 1.50969 1.45859 1.12341 1.04271 1.71946 1.21354 0.88466 0.86111 1.03463 1.21730 0.98557 0.92068 1.03623 1.20702 0.95084 0.83602 0.98251 1.42546 1.05908 1.01080 1.89571 1.19611 0.90580 0.86438 1.41393 0.90651 1.25555 0.97336 1.00183 1.03641 1.69785 1.11687 1.21063 1.59400 0.85231 0.77801 0.78640 0.78211 1.20404 1.22134 1.20418 1.23441 0.99723 0.93779 1.10077 1.18487 0.87337 0.85565 0.81972 1.90944 1.79741 1.17386 1.56872 0.85211 0.88231 0.88233 0.74073 0.90396 0.90380 0.90485 0.90497 0.95740 0.95738 0.79222 0.93935 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.18 127.77 1.43 2.09 16 2 N -0.44 -6.91 3.68 -492.73 -1.82 -8.73 16 3 O 0.02 0.23 10.69 70.37 0.75 0.98 16 4 C 0.04 0.73 7.25 24.47 0.18 0.90 16 5 C 0.61 12.05 7.84 86.89 0.68 12.74 16 6 O -0.53 -14.08 16.89 -3.69 -0.06 -14.14 16 7 N -0.69 -11.49 5.55 -465.63 -2.59 -14.08 16 8 C 0.13 2.62 5.67 86.38 0.49 3.11 16 9 C -0.12 -3.00 5.44 30.59 0.17 -2.84 16 10 C 0.15 5.35 6.26 86.38 0.54 5.89 16 11 N -0.75 -36.02 5.60 -343.44 -1.92 -37.95 16 12 C -0.25 -13.49 9.99 84.03 0.84 -12.65 16 13 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 14 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 15 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 16 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.25 -4.91 10.94 22.84 0.25 -4.66 16 21 C 0.47 10.54 8.02 85.26 0.68 11.22 16 22 O -0.56 -16.84 17.92 -5.23 -0.09 -16.93 16 23 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.42 4.93 8.28 -92.71 -0.77 4.16 16 27 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.38 18.98 7.67 -92.71 -0.71 18.26 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.20 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -73.90 315.80 1.96 -71.94 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.35 Total: 17.14 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.72 Total: 12.08 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.04 Total: -118.09 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: 0.60 Total: -30.09 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.90 1.96 -71.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157127583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.239 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds