Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47026 * 2 1 4 4 O 1.42904 * 109.47173 * 119.99881 * 2 1 3 5 5 C 1.52992 * 109.47413 * 239.99889 * 2 1 3 6 6 H 1.09006 * 109.46874 * 64.99665 * 5 2 1 7 7 C 1.53000 * 109.47509 * 184.99732 * 5 2 1 8 8 O 1.42901 * 109.46603 * 55.00451 * 7 5 2 9 9 N 1.46503 * 109.47358 * 305.00333 * 5 2 1 10 10 C 1.39883 * 120.00181 * 154.99425 * 9 5 2 11 11 C 1.39096 * 119.96280 * 0.25967 * 10 9 5 12 12 C 1.38618 * 120.46628 * 180.30248 * 11 10 9 13 13 C 1.37573 * 120.38887 * 359.71941 * 12 11 10 14 14 C 1.40796 * 119.90668 * 359.97438 * 13 12 11 15 15 C 1.41325 * 120.22894 * 179.97438 * 14 13 12 16 16 H 1.07991 * 119.99647 * 204.59952 * 15 14 13 17 17 C 1.39924 * 119.99575 * 24.60082 * 15 14 13 18 18 N 1.30851 * 120.00486 * 17.79756 * 17 15 14 19 19 Si 1.86806 * 119.99610 * 197.79088 * 17 15 14 20 20 H 1.48505 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46813 * 120.00463 * 19 17 15 22 22 H 1.48501 * 109.47154 * 240.00324 * 19 17 15 23 23 C 1.38595 * 119.96153 * 179.97438 * 10 9 5 24 24 F 1.35104 * 120.18611 * 359.97438 * 23 10 9 25 25 H 1.09000 * 109.47276 * 299.99786 * 1 2 3 26 26 H 1.09001 * 109.47296 * 59.99895 * 1 2 3 27 27 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 28 28 H 0.96699 * 114.00160 * 300.00602 * 4 2 1 29 29 H 1.09000 * 109.47292 * 175.00170 * 7 5 2 30 30 H 1.08994 * 109.47248 * 295.00629 * 7 5 2 31 31 H 0.96700 * 113.99685 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99644 * 335.00028 * 9 5 2 33 33 H 1.08000 * 119.76772 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.80991 * 179.69621 * 12 11 10 35 35 H 1.08003 * 120.05245 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00274 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2491 6 1 1.7516 -0.1583 -2.1369 7 6 3.5649 -0.8310 -1.1879 8 8 3.9479 -1.4666 0.0333 9 7 1.4559 -2.0633 -1.3109 10 6 1.3245 -2.7129 -2.5428 11 6 1.7538 -2.0861 -3.7080 12 6 1.6229 -2.7177 -4.9350 13 6 1.0717 -3.9756 -5.0149 14 6 0.6377 -4.6276 -3.8449 15 6 0.0700 -5.9196 -3.9192 16 1 -0.6045 -6.2582 -3.1467 17 6 0.3819 -6.7601 -4.9935 18 7 1.4352 -6.5163 -5.7306 19 14 -0.7053 -8.2304 -5.3754 20 1 -1.8246 -8.2847 -4.4009 21 1 -1.2520 -8.0979 -6.7497 22 1 0.0962 -9.4768 -5.2794 23 6 0.7723 -3.9828 -2.6002 24 9 0.3604 -4.5963 -1.4692 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -0.2702 1.9980 29 1 3.9209 -1.4215 -2.0321 30 1 4.0030 0.1661 -1.2315 31 1 4.9034 -1.5702 0.1398 32 1 1.1601 -2.5014 -0.4976 33 1 2.1880 -1.0986 -3.6569 34 1 1.9553 -2.2192 -5.8336 35 1 0.9727 -4.4628 -5.9737 36 1 1.6512 -7.0986 -6.4756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161779413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -125.699763 kcal Electronic energy + Delta-G solvation = -21013.715993 eV Core-core repulsion = 17604.956684 eV Total energy + Delta-G solvation = -3408.759309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.99420 -38.76621 -37.10141 -35.89810 -34.66103 -33.15009 -30.86436 -29.50317 -28.71158 -26.66371 -25.25144 -23.29608 -21.42862 -20.63422 -19.65350 -17.87973 -16.96563 -16.58217 -16.15994 -15.81358 -15.12440 -14.93076 -14.62529 -14.13097 -13.85278 -13.67544 -13.35110 -13.06333 -12.83410 -12.41620 -12.26706 -12.00794 -11.73661 -11.57691 -11.47215 -11.09714 -11.02326 -10.81856 -10.46452 -10.39303 -9.92864 -9.79530 -9.59563 -9.41972 -9.31209 -8.77342 -7.34948 -6.79747 -6.18035 -4.36904 2.74137 3.05333 3.08869 3.15475 3.24043 3.93328 4.09048 4.42332 4.58687 4.66375 4.86488 5.13293 5.24578 5.56653 5.59244 5.69483 5.73243 5.79239 5.89159 6.05222 6.13470 6.25508 6.29808 6.68154 6.93417 6.99968 7.20207 7.35032 7.65222 7.77636 7.84643 8.00680 8.06119 8.15586 8.38465 8.60167 8.68869 8.82904 9.01190 10.15830 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.005018 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.225885 B = 5578.347560 C = 5850.128683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.098 3.902 3 H 0.054 0.946 4 O -0.533 6.533 5 C 0.171 3.829 6 H 0.096 0.904 7 C 0.061 3.939 8 O -0.538 6.538 9 N -0.738 5.738 10 C 0.208 3.792 11 C -0.294 4.294 12 C -0.077 4.077 13 C -0.186 4.186 14 C 0.118 3.882 15 C -0.452 4.452 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.786 5.786 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.096 4.096 24 F -0.167 7.167 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.362 0.638 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.360 0.640 32 H 0.400 0.600 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 10.991 6.091 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.039 3.961 3 H 0.072 0.928 4 O -0.336 6.336 5 C 0.063 3.937 6 H 0.114 0.886 7 C -0.019 4.019 8 O -0.340 6.340 9 N -0.371 5.371 10 C 0.108 3.892 11 C -0.317 4.317 12 C -0.096 4.096 13 C -0.207 4.207 14 C 0.114 3.886 15 C -0.481 4.481 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.411 5.411 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.121 4.121 24 F -0.147 7.147 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.207 0.793 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.204 0.796 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.453 10.628 5.508 12.058 hybrid contribution -0.119 -0.456 0.420 0.631 sum 1.334 10.171 5.927 11.848 Atomic orbital electron populations 1.22482 0.96393 1.03536 1.01751 1.21962 0.92793 0.94606 0.86779 0.92771 1.86879 1.76010 1.56250 1.14445 1.20867 0.90899 0.85935 0.95970 0.88607 1.22684 0.96269 0.95294 0.87668 1.86776 1.26152 1.82271 1.38809 1.44190 1.70238 1.16145 1.06485 1.17467 0.95716 0.90301 0.85710 1.19697 1.19325 1.01197 0.91481 1.20447 0.98666 0.95258 0.95242 1.21006 1.07090 0.94285 0.98287 1.17420 0.89484 0.92658 0.89011 1.19544 1.24115 0.97938 1.06511 0.90048 1.25915 0.94180 0.99327 0.94686 1.69863 1.20545 1.35987 1.14698 0.86225 0.80888 0.80214 0.79227 1.18279 1.19606 1.19902 1.17268 1.18486 0.93818 0.82480 1.91210 1.89987 1.83523 1.49934 0.92863 0.91762 0.91094 0.79347 0.93142 0.94683 0.79557 0.76538 0.88939 0.89087 0.86094 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.32 37.16 0.35 -1.87 16 2 C 0.10 1.24 3.37 -26.74 -0.09 1.15 16 3 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.53 -7.17 10.61 -58.58 -0.62 -7.80 16 5 C 0.17 2.63 2.05 -67.93 -0.14 2.49 16 6 H 0.10 1.41 6.49 -51.93 -0.34 1.08 16 7 C 0.06 0.90 6.77 37.16 0.25 1.15 16 8 O -0.54 -8.30 11.17 -58.58 -0.65 -8.96 16 9 N -0.74 -14.33 4.43 -52.14 -0.23 -14.56 16 10 C 0.21 4.82 6.64 -83.73 -0.56 4.26 16 11 C -0.29 -6.45 8.85 -39.12 -0.35 -6.79 16 12 C -0.08 -1.78 10.01 -39.68 -0.40 -2.17 16 13 C -0.19 -4.85 8.69 -38.86 -0.34 -5.19 16 14 C 0.12 3.27 5.58 -106.78 -0.60 2.67 16 15 C -0.45 -12.50 8.78 -37.78 -0.33 -12.83 16 16 H 0.08 2.25 7.73 -52.49 -0.41 1.84 16 17 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 18 N -0.79 -20.42 10.96 55.55 0.61 -19.81 16 19 Si 0.91 18.99 29.60 -169.99 -5.03 13.96 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.10 -2.54 7.31 -38.48 -0.28 -2.82 16 24 F -0.17 -4.43 16.08 2.25 0.04 -4.39 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 28 H 0.36 3.30 9.08 45.56 0.41 3.71 16 29 H 0.05 0.84 7.78 -51.93 -0.40 0.43 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.36 4.07 9.12 45.56 0.42 4.48 16 32 H 0.40 8.17 7.34 -40.82 -0.30 7.87 16 33 H 0.09 1.76 6.16 -52.49 -0.32 1.44 16 34 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.12 3.22 6.16 -52.48 -0.32 2.89 16 36 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -30.96 302.59 -6.78 -37.74 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -2.88 Total: 17.32 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.57 Total: -18.07 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.38 Total: -34.38 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.28 Total: -16.75 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.04 Total: -4.39 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.96 -6.78 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161779413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.956 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds