Wall clock time and date at job start Mon Mar 30 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47026 * 2 1 4 4 O 1.42904 * 109.47173 * 119.99881 * 2 1 3 5 5 C 1.52992 * 109.47413 * 239.99889 * 2 1 3 6 6 H 1.09006 * 109.46874 * 64.99665 * 5 2 1 7 7 C 1.53000 * 109.47509 * 184.99732 * 5 2 1 8 8 O 1.42901 * 109.46603 * 55.00451 * 7 5 2 9 9 N 1.46503 * 109.47358 * 305.00333 * 5 2 1 10 10 C 1.39883 * 120.00181 * 154.99425 * 9 5 2 11 11 C 1.39096 * 119.96280 * 0.25967 * 10 9 5 12 12 C 1.38618 * 120.46628 * 180.30248 * 11 10 9 13 13 C 1.37573 * 120.38887 * 359.71941 * 12 11 10 14 14 C 1.40796 * 119.90668 * 359.97438 * 13 12 11 15 15 C 1.41325 * 120.22894 * 179.97438 * 14 13 12 16 16 H 1.07991 * 119.99647 * 204.59952 * 15 14 13 17 17 C 1.39924 * 119.99575 * 24.60082 * 15 14 13 18 18 N 1.30851 * 120.00486 * 17.79756 * 17 15 14 19 19 Si 1.86806 * 119.99610 * 197.79088 * 17 15 14 20 20 H 1.48505 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46813 * 120.00463 * 19 17 15 22 22 H 1.48501 * 109.47154 * 240.00324 * 19 17 15 23 23 C 1.38595 * 119.96153 * 179.97438 * 10 9 5 24 24 F 1.35104 * 120.18611 * 359.97438 * 23 10 9 25 25 H 1.09000 * 109.47276 * 299.99786 * 1 2 3 26 26 H 1.09001 * 109.47296 * 59.99895 * 1 2 3 27 27 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 28 28 H 0.96699 * 114.00160 * 300.00602 * 4 2 1 29 29 H 1.09000 * 109.47292 * 175.00170 * 7 5 2 30 30 H 1.08994 * 109.47248 * 295.00629 * 7 5 2 31 31 H 0.96700 * 113.99685 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99644 * 335.00028 * 9 5 2 33 33 H 1.08000 * 119.76772 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.80991 * 179.69621 * 12 11 10 35 35 H 1.08003 * 120.05245 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00274 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2491 6 1 1.7516 -0.1583 -2.1369 7 6 3.5649 -0.8310 -1.1879 8 8 3.9479 -1.4666 0.0333 9 7 1.4559 -2.0633 -1.3109 10 6 1.3245 -2.7129 -2.5428 11 6 1.7538 -2.0861 -3.7080 12 6 1.6229 -2.7177 -4.9350 13 6 1.0717 -3.9756 -5.0149 14 6 0.6377 -4.6276 -3.8449 15 6 0.0700 -5.9196 -3.9192 16 1 -0.6045 -6.2582 -3.1467 17 6 0.3819 -6.7601 -4.9935 18 7 1.4352 -6.5163 -5.7306 19 14 -0.7053 -8.2304 -5.3754 20 1 -1.8246 -8.2847 -4.4009 21 1 -1.2520 -8.0979 -6.7497 22 1 0.0962 -9.4768 -5.2794 23 6 0.7723 -3.9828 -2.6002 24 9 0.3604 -4.5963 -1.4692 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -0.2702 1.9980 29 1 3.9209 -1.4215 -2.0321 30 1 4.0030 0.1661 -1.2315 31 1 4.9034 -1.5702 0.1398 32 1 1.1601 -2.5014 -0.4976 33 1 2.1880 -1.0986 -3.6569 34 1 1.9553 -2.2192 -5.8336 35 1 0.9727 -4.4628 -5.9737 36 1 1.6512 -7.0986 -6.4756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161779413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:49 Heat of formation + Delta-G solvation = -148.691206 kcal Electronic energy + Delta-G solvation = -21014.712977 eV Core-core repulsion = 17604.956684 eV Total energy + Delta-G solvation = -3409.756292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03389 -40.10833 -38.72929 -36.99737 -36.29289 -34.84088 -32.17493 -31.42259 -29.92538 -28.30462 -27.19242 -24.38776 -23.08235 -22.47864 -21.05228 -19.45590 -18.42510 -17.89604 -17.63228 -17.60975 -16.83701 -16.44253 -16.04324 -15.85600 -15.54999 -14.99414 -14.73389 -14.68025 -14.41542 -13.80079 -13.66138 -13.49285 -13.29034 -13.08235 -12.93556 -12.76459 -12.59500 -12.39953 -12.09500 -11.75815 -11.61540 -11.41288 -11.12682 -10.80730 -10.65218 -10.48956 -9.30447 -8.69741 -7.93855 -6.40447 0.89211 1.17531 1.36564 1.50562 1.53044 2.19990 2.64626 2.69921 3.42691 3.53967 3.65799 3.83788 4.11708 4.17785 4.29878 4.43540 4.52765 4.59699 4.65531 4.79113 4.85530 4.90685 5.01641 5.07606 5.16138 5.28922 5.31672 5.50232 5.76889 5.93341 6.11327 6.21548 6.51159 6.74812 6.84368 6.89890 7.05718 7.09701 7.11484 8.28255 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.005018 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.225885 B = 5578.347560 C = 5850.128683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.088 0.912 4 O -0.555 6.555 5 C 0.155 3.845 6 H 0.108 0.892 7 C 0.063 3.937 8 O -0.558 6.558 9 N -0.731 5.731 10 C 0.217 3.783 11 C -0.285 4.285 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.090 3.910 15 C -0.496 4.496 16 H 0.064 0.936 17 C 0.040 3.960 18 N -0.813 5.813 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.255 1.255 22 H -0.262 1.262 23 C -0.139 4.139 24 F -0.178 7.178 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.380 0.620 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.377 0.623 32 H 0.392 0.608 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 12.969 6.119 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.045 3.955 3 H 0.106 0.894 4 O -0.361 6.361 5 C 0.050 3.950 6 H 0.125 0.875 7 C -0.017 4.017 8 O -0.363 6.363 9 N -0.361 5.361 10 C 0.114 3.886 11 C -0.308 4.308 12 C -0.088 4.088 13 C -0.236 4.236 14 C 0.086 3.914 15 C -0.525 4.525 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.438 5.438 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.179 1.179 22 H -0.187 1.187 23 C -0.164 4.164 24 F -0.158 7.158 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.228 0.772 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.224 0.776 32 H 0.226 0.774 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.086 12.659 5.571 13.987 hybrid contribution -0.211 -0.905 0.525 1.067 sum 1.875 11.754 6.096 13.373 Atomic orbital electron populations 1.22449 0.96292 1.01832 1.03238 1.21936 0.92730 0.95424 0.85369 0.89405 1.86827 1.76358 1.57307 1.15642 1.21325 0.91552 0.83867 0.98275 0.87457 1.22649 0.95604 0.96746 0.86652 1.86733 1.27970 1.82614 1.38989 1.44355 1.69546 1.17467 1.04749 1.17615 0.94014 0.89298 0.87682 1.20082 1.17931 1.02389 0.90408 1.20821 0.96771 0.94109 0.97111 1.20965 1.09507 0.95855 0.97240 1.17792 0.90159 0.93260 0.90167 1.19675 1.25667 0.99218 1.07938 0.91792 1.26728 0.95188 1.01939 0.93753 1.69881 1.21439 1.37371 1.15133 0.85135 0.78599 0.76474 0.79323 1.18885 1.17901 1.18701 1.17657 1.20890 0.95696 0.82119 1.91157 1.90337 1.83983 1.50277 0.90329 0.91397 0.94306 0.77176 0.95357 0.90976 0.77642 0.77380 0.85147 0.85768 0.87400 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 9.32 71.98 0.67 -3.26 16 2 C 0.10 2.31 3.37 30.59 0.10 2.41 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 O -0.56 -13.55 10.61 -126.65 -1.34 -14.89 16 5 C 0.16 4.36 2.05 44.99 0.09 4.45 16 6 H 0.11 2.76 6.49 -2.38 -0.02 2.74 16 7 C 0.06 1.67 6.77 71.98 0.49 2.16 16 8 O -0.56 -16.00 11.17 -126.65 -1.41 -17.41 16 9 N -0.73 -27.87 4.43 -318.88 -1.41 -29.28 16 10 C 0.22 10.01 6.64 38.15 0.25 10.26 16 11 C -0.28 -12.01 8.85 22.57 0.20 -11.82 16 12 C -0.07 -3.13 10.01 22.20 0.22 -2.90 16 13 C -0.21 -11.48 8.69 22.74 0.20 -11.28 16 14 C 0.09 5.19 5.58 -21.26 -0.12 5.08 16 15 C -0.50 -28.92 8.78 23.44 0.21 -28.71 16 16 H 0.06 3.78 7.73 -2.92 -0.02 3.76 16 17 C 0.04 2.11 5.14 85.25 0.44 2.54 16 18 N -0.81 -43.24 10.96 21.82 0.24 -43.00 16 19 Si 0.98 39.75 29.60 68.60 2.03 41.79 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 C -0.14 -7.64 7.31 22.99 0.17 -7.47 16 24 F -0.18 -9.95 16.08 44.97 0.72 -9.23 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.09 7.13 -2.39 -0.02 1.08 16 28 H 0.38 5.88 9.08 -74.06 -0.67 5.21 16 29 H 0.03 0.87 7.78 -2.39 -0.02 0.85 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.38 7.71 9.12 -74.06 -0.68 7.04 16 32 H 0.39 16.14 7.34 -92.71 -0.68 15.46 16 33 H 0.13 4.47 6.16 -2.91 -0.02 4.45 16 34 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 36 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 Total: -1.00 -70.07 302.59 0.85 -69.21 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.89 Total: 41.35 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 2.92 Total: -38.54 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.17 Total: -72.28 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -2.76 Total: -32.30 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 0.72 Total: -9.23 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.79 kcal Total: -70.07 0.85 -69.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161779413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.479 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds