Wall clock time and date at job start Mon Mar 30 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38677 * 120.41977 * 2 1 4 4 C 1.38625 * 118.41687 * 179.78371 * 3 2 1 5 5 C 1.38229 * 119.16158 * 0.47462 * 4 3 2 6 6 N 1.31854 * 120.76573 * 359.76568 * 5 4 3 7 7 C 1.31888 * 121.72367 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.61353 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47243 * 269.98078 * 8 7 6 10 10 C 1.38090 * 119.99954 * 180.02562 * 9 8 7 11 11 N 1.32273 * 119.90343 * 0.02562 * 10 9 8 12 12 C 1.31976 * 121.86617 * 179.97438 * 11 10 9 13 13 C 1.38683 * 121.44566 * 359.97438 * 12 11 10 14 14 C 1.38010 * 119.62392 * 359.97438 * 13 12 11 15 15 C 1.40998 * 118.28712 * 359.75014 * 14 13 12 16 16 C 1.41017 * 120.70977 * 180.25221 * 15 14 13 17 17 H 1.07999 * 120.00119 * 150.13151 * 16 15 14 18 18 C 1.39946 * 119.99634 * 330.12396 * 16 15 14 19 19 N 1.30869 * 119.99904 * 162.13222 * 18 16 15 20 20 Si 1.86796 * 120.00253 * 342.13038 * 18 16 15 21 21 H 1.48501 * 109.46939 * 95.38772 * 20 18 16 22 22 H 1.48503 * 109.47371 * 215.38813 * 20 18 16 23 23 H 1.48499 * 109.46964 * 335.38941 * 20 18 16 24 24 H 1.09004 * 109.46968 * 269.72033 * 1 2 3 25 25 H 1.08999 * 109.47492 * 149.72181 * 1 2 3 26 26 H 1.09004 * 109.47057 * 29.71627 * 1 2 3 27 27 H 1.07997 * 120.79049 * 0.02628 * 3 2 1 28 28 H 1.08004 * 120.41606 * 180.22488 * 4 3 2 29 29 H 1.08001 * 119.61661 * 179.79616 * 5 4 3 30 30 H 1.08997 * 109.46997 * 29.98146 * 8 7 6 31 31 H 1.08999 * 109.46445 * 149.97728 * 8 7 6 32 32 H 0.96999 * 119.99718 * 359.97438 * 9 8 7 33 33 H 1.07994 * 119.27779 * 179.97438 * 12 11 10 34 34 H 1.07996 * 120.18618 * 180.02562 * 13 12 11 35 35 H 1.08005 * 120.85671 * 180.02562 * 14 13 12 36 36 H 0.97002 * 120.00509 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1474 0.0046 5 6 4.2256 -0.0824 -0.0010 6 7 3.5254 -1.1997 -0.0060 7 6 2.2065 -1.1916 -0.0063 8 6 1.4539 -2.4972 -0.0127 9 7 1.2099 -2.9135 -1.3959 10 6 0.5314 -4.0882 -1.6539 11 7 0.1021 -4.8357 -0.6507 12 6 -0.5507 -5.9649 -0.8527 13 6 -0.8205 -6.4255 -2.1327 14 6 -0.4010 -5.6924 -3.2241 15 6 0.2900 -4.4853 -2.9926 16 6 0.7371 -3.6933 -4.0703 17 1 0.8134 -2.6219 -3.9579 18 6 1.0819 -4.2958 -5.2855 19 7 1.1567 -3.5750 -6.3752 20 14 1.4356 -6.1287 -5.3521 21 1 0.2057 -6.8558 -5.7569 22 1 2.5127 -6.3895 -6.3406 23 1 1.8696 -6.5981 -4.0117 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 -0.8874 -0.5181 26 1 -0.3633 0.8926 -0.5094 27 1 1.6891 2.1423 0.0004 28 1 4.1736 2.0591 0.0084 29 1 5.3046 -0.1287 -0.0008 30 1 2.0434 -3.2589 0.4975 31 1 0.5014 -2.3698 0.5019 32 1 1.5244 -2.3636 -2.1305 33 1 -0.8819 -6.5428 -0.0027 34 1 -1.3566 -7.3522 -2.2746 35 1 -0.6008 -6.0322 -4.2297 36 1 1.3954 -3.9925 -7.2176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161876538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:19 Heat of formation + Delta-G solvation = 63.833087 kcal Electronic energy + Delta-G solvation = -19636.678895 eV Core-core repulsion = 16699.200323 eV Total energy + Delta-G solvation = -2937.478572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30756 -38.67114 -35.15090 -33.86895 -33.49239 -32.04050 -31.17737 -29.15669 -27.34130 -25.94181 -25.03968 -22.62834 -21.97550 -21.07097 -20.72414 -17.46836 -17.07357 -16.64170 -16.23238 -15.48800 -15.14995 -14.63463 -14.17654 -13.80844 -13.59317 -13.37103 -13.12593 -12.99507 -12.68699 -12.54102 -12.41676 -12.23233 -11.97753 -11.85579 -11.32726 -11.16905 -10.76595 -10.26906 -9.89347 -9.71244 -9.41862 -9.32056 -9.10236 -8.80595 -8.20863 -8.09157 -6.93814 -6.73098 -4.35619 1.09926 1.32009 2.58018 2.78154 3.11435 3.21811 3.33904 3.72606 3.99458 4.34639 4.55532 4.62512 4.76580 4.83703 4.98652 5.04792 5.42755 5.47470 5.63388 5.65713 5.73202 5.89444 5.95452 6.11321 6.13948 6.17841 6.26919 6.38136 6.43745 6.57783 6.76405 6.84575 7.07812 7.34503 7.59520 7.80584 8.07679 8.10604 8.32234 8.38709 8.71185 8.80084 9.58279 10.08481 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.005793 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.820014 B = 4832.058252 C = 5585.397604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C -0.082 4.082 4 C -0.171 4.171 5 C 0.089 3.911 6 N -0.465 5.465 7 C 0.118 3.882 8 C 0.193 3.807 9 N -0.718 5.718 10 C 0.328 3.672 11 N -0.528 5.528 12 C 0.005 3.995 13 C -0.173 4.173 14 C -0.199 4.199 15 C 0.017 3.983 16 C -0.442 4.442 17 H 0.088 0.912 18 C 0.086 3.914 19 N -0.812 5.812 20 Si 0.910 3.090 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.246 1.246 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.407 0.593 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 7.408 9.116 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.191 4.191 5 C -0.068 4.068 6 N -0.174 5.174 7 C -0.021 4.021 8 C 0.067 3.933 9 N -0.357 5.357 10 C 0.088 3.912 11 N -0.246 5.246 12 C -0.146 4.146 13 C -0.195 4.195 14 C -0.224 4.224 15 C 0.009 3.991 16 C -0.472 4.472 17 H 0.106 0.894 18 C -0.133 4.133 19 N -0.437 5.437 20 Si 0.737 3.263 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.170 1.170 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.171 0.829 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.244 0.756 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.415 6.890 9.893 12.295 hybrid contribution -0.198 0.064 -1.450 1.465 sum 2.217 6.954 8.443 11.160 Atomic orbital electron populations 1.20851 0.90010 1.03987 1.02602 1.20817 0.97820 0.93434 0.99907 1.21473 0.94162 0.98003 0.97173 1.22118 0.95282 0.99542 1.02204 1.22740 1.00267 0.87679 0.96148 1.67550 1.07860 1.31412 1.10562 1.21399 0.89680 0.95094 0.95885 1.19759 0.97354 0.90003 0.86157 1.43658 1.63485 1.23352 1.05246 1.18367 0.95323 0.88639 0.88919 1.66618 1.15660 1.07556 1.34811 1.21402 1.04062 0.94377 0.94784 1.21286 1.03875 1.00244 0.94105 1.21016 1.05146 0.98878 0.97400 1.18046 0.95297 0.94006 0.91744 1.19066 1.38399 0.95957 0.93806 0.89381 1.26057 0.92049 1.00792 0.94371 1.69698 1.34966 1.39157 0.99833 0.86303 0.78146 0.82282 0.79583 1.19723 1.21897 1.16963 0.90888 0.89852 0.91396 0.84980 0.85008 0.82913 0.91280 0.91195 0.75582 0.85901 0.88240 0.87559 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.21 36.01 0.33 -1.09 16 2 C -0.12 -1.61 5.90 -104.48 -0.62 -2.22 16 3 C -0.08 -0.95 9.86 -39.28 -0.39 -1.34 16 4 C -0.17 -1.89 10.11 -39.44 -0.40 -2.29 16 5 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 6 N -0.47 -7.64 10.27 -9.47 -0.10 -7.74 16 7 C 0.12 1.90 6.15 -82.59 -0.51 1.39 16 8 C 0.19 3.45 5.17 -5.19 -0.03 3.43 16 9 N -0.72 -15.03 5.56 -61.15 -0.34 -15.37 16 10 C 0.33 7.79 7.52 -155.02 -1.17 6.63 16 11 N -0.53 -12.22 9.54 -11.86 -0.11 -12.33 16 12 C 0.01 0.12 11.17 -17.33 -0.19 -0.08 16 13 C -0.17 -3.80 10.08 -39.50 -0.40 -4.20 16 14 C -0.20 -4.84 7.27 -38.62 -0.28 -5.12 16 15 C 0.02 0.42 5.13 -106.47 -0.55 -0.12 16 16 C -0.44 -11.66 8.93 -37.89 -0.34 -12.00 16 17 H 0.09 2.38 7.04 -52.49 -0.37 2.01 16 18 C 0.09 2.23 5.42 -17.32 -0.09 2.14 16 19 N -0.81 -21.47 13.93 55.55 0.77 -20.70 16 20 Si 0.91 21.08 24.53 -169.99 -4.17 16.91 16 21 H -0.27 -6.07 6.71 56.52 0.38 -5.69 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.25 -5.97 6.84 56.52 0.39 -5.58 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.20 6.68 -51.93 -0.35 0.85 16 26 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.19 6.69 -51.93 -0.35 0.85 16 32 H 0.41 8.72 6.76 -40.82 -0.28 8.44 16 33 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.11 2.57 4.81 -52.48 -0.25 2.31 16 36 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -29.30 302.51 -8.35 -37.65 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.14 Total: 10.93 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -4.82 Total: -13.91 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.22 Total: -56.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.30 -8.35 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161876538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.485 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds