Wall clock time and date at job start Mon Mar 30 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38677 * 120.41977 * 2 1 4 4 C 1.38625 * 118.41687 * 179.78371 * 3 2 1 5 5 C 1.38229 * 119.16158 * 0.47462 * 4 3 2 6 6 N 1.31854 * 120.76573 * 359.76568 * 5 4 3 7 7 C 1.31888 * 121.72367 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.61353 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47243 * 269.98078 * 8 7 6 10 10 C 1.38090 * 119.99954 * 180.02562 * 9 8 7 11 11 N 1.32273 * 119.90343 * 0.02562 * 10 9 8 12 12 C 1.31976 * 121.86617 * 179.97438 * 11 10 9 13 13 C 1.38683 * 121.44566 * 359.97438 * 12 11 10 14 14 C 1.38010 * 119.62392 * 359.97438 * 13 12 11 15 15 C 1.40998 * 118.28712 * 359.75014 * 14 13 12 16 16 C 1.41017 * 120.70977 * 180.25221 * 15 14 13 17 17 H 1.07999 * 120.00119 * 150.13151 * 16 15 14 18 18 C 1.39946 * 119.99634 * 330.12396 * 16 15 14 19 19 N 1.30869 * 119.99904 * 162.13222 * 18 16 15 20 20 Si 1.86796 * 120.00253 * 342.13038 * 18 16 15 21 21 H 1.48501 * 109.46939 * 95.38772 * 20 18 16 22 22 H 1.48503 * 109.47371 * 215.38813 * 20 18 16 23 23 H 1.48499 * 109.46964 * 335.38941 * 20 18 16 24 24 H 1.09004 * 109.46968 * 269.72033 * 1 2 3 25 25 H 1.08999 * 109.47492 * 149.72181 * 1 2 3 26 26 H 1.09004 * 109.47057 * 29.71627 * 1 2 3 27 27 H 1.07997 * 120.79049 * 0.02628 * 3 2 1 28 28 H 1.08004 * 120.41606 * 180.22488 * 4 3 2 29 29 H 1.08001 * 119.61661 * 179.79616 * 5 4 3 30 30 H 1.08997 * 109.46997 * 29.98146 * 8 7 6 31 31 H 1.08999 * 109.46445 * 149.97728 * 8 7 6 32 32 H 0.96999 * 119.99718 * 359.97438 * 9 8 7 33 33 H 1.07994 * 119.27779 * 179.97438 * 12 11 10 34 34 H 1.07996 * 120.18618 * 180.02562 * 13 12 11 35 35 H 1.08005 * 120.85671 * 180.02562 * 14 13 12 36 36 H 0.97002 * 120.00509 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1474 0.0046 5 6 4.2256 -0.0824 -0.0010 6 7 3.5254 -1.1997 -0.0060 7 6 2.2065 -1.1916 -0.0063 8 6 1.4539 -2.4972 -0.0127 9 7 1.2099 -2.9135 -1.3959 10 6 0.5314 -4.0882 -1.6539 11 7 0.1021 -4.8357 -0.6507 12 6 -0.5507 -5.9649 -0.8527 13 6 -0.8205 -6.4255 -2.1327 14 6 -0.4010 -5.6924 -3.2241 15 6 0.2900 -4.4853 -2.9926 16 6 0.7371 -3.6933 -4.0703 17 1 0.8134 -2.6219 -3.9579 18 6 1.0819 -4.2958 -5.2855 19 7 1.1567 -3.5750 -6.3752 20 14 1.4356 -6.1287 -5.3521 21 1 0.2057 -6.8558 -5.7569 22 1 2.5127 -6.3895 -6.3406 23 1 1.8696 -6.5981 -4.0117 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 -0.8874 -0.5181 26 1 -0.3633 0.8926 -0.5094 27 1 1.6891 2.1423 0.0004 28 1 4.1736 2.0591 0.0084 29 1 5.3046 -0.1287 -0.0008 30 1 2.0434 -3.2589 0.4975 31 1 0.5014 -2.3698 0.5019 32 1 1.5244 -2.3636 -2.1305 33 1 -0.8819 -6.5428 -0.0027 34 1 -1.3566 -7.3522 -2.2746 35 1 -0.6008 -6.0322 -4.2297 36 1 1.3954 -3.9925 -7.2176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161876538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:19 Heat of formation + Delta-G solvation = 45.698148 kcal Electronic energy + Delta-G solvation = -19637.465285 eV Core-core repulsion = 16699.200323 eV Total energy + Delta-G solvation = -2938.264962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38918 -40.45118 -36.66607 -35.77989 -34.54971 -33.28032 -33.06749 -30.75346 -28.47786 -27.42648 -26.74577 -23.98176 -23.28070 -22.63943 -22.26930 -19.38729 -18.68766 -17.76034 -17.54491 -17.14928 -16.67570 -15.84257 -15.50748 -15.35783 -15.19457 -15.13357 -14.63323 -14.08397 -14.02246 -13.91588 -13.76457 -13.60868 -13.55133 -13.29993 -13.12582 -12.62972 -12.25112 -12.08469 -11.78328 -11.31449 -10.84215 -10.69752 -10.36998 -10.10013 -10.00605 -9.75167 -8.87345 -8.50792 -6.31570 0.06713 0.34492 0.73728 0.92471 1.24913 1.37561 1.47161 2.11637 2.51758 2.68725 3.04387 3.31129 3.59501 3.74167 3.92643 4.01102 4.12845 4.19018 4.35632 4.53035 4.57187 4.64812 4.69663 4.73303 4.74859 4.78525 4.86556 5.05990 5.17530 5.21942 5.24077 5.33384 5.51409 5.73355 5.79203 5.96939 6.19261 6.41365 6.64295 6.77995 6.95280 7.05925 7.76208 8.20387 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.005793 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.820014 B = 4832.058252 C = 5585.397604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.156 4.156 5 C 0.074 3.926 6 N -0.504 5.504 7 C 0.087 3.913 8 C 0.202 3.798 9 N -0.714 5.714 10 C 0.320 3.680 11 N -0.539 5.539 12 C 0.019 3.981 13 C -0.182 4.182 14 C -0.202 4.202 15 C -0.013 4.013 16 C -0.466 4.466 17 H 0.063 0.937 18 C 0.051 3.949 19 N -0.850 5.850 20 Si 0.959 3.041 21 H -0.256 1.256 22 H -0.280 1.280 23 H -0.264 1.264 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.401 0.599 33 H 0.163 0.837 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 7.728 10.484 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.084 4.084 6 N -0.213 5.213 7 C -0.050 4.050 8 C 0.077 3.923 9 N -0.352 5.352 10 C 0.080 3.920 11 N -0.258 5.258 12 C -0.133 4.133 13 C -0.204 4.204 14 C -0.228 4.228 15 C -0.020 4.020 16 C -0.497 4.497 17 H 0.081 0.919 18 C -0.163 4.163 19 N -0.477 5.477 20 Si 0.784 3.216 21 H -0.181 1.181 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.194 0.806 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.180 0.820 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.222 7.233 11.269 13.574 hybrid contribution -0.154 0.003 -1.657 1.665 sum 2.068 7.237 9.611 12.208 Atomic orbital electron populations 1.20834 0.89246 1.03470 1.03496 1.20996 0.98521 0.93503 0.99620 1.21917 0.94635 0.98414 0.95772 1.22561 0.95424 1.00198 0.99359 1.23261 1.01425 0.87744 0.95963 1.67431 1.08273 1.33680 1.11936 1.21129 0.89994 0.94894 0.98948 1.19690 0.97595 0.90879 0.84106 1.43792 1.62481 1.22436 1.06478 1.18604 0.95242 0.89380 0.88775 1.66775 1.16287 1.08263 1.34464 1.22187 1.01418 0.93496 0.96234 1.21654 1.03951 1.01472 0.93341 1.21255 1.04548 0.98613 0.98392 1.18212 0.96618 0.95014 0.92174 1.18998 1.40645 0.95034 0.95013 0.91895 1.26613 0.91872 1.03813 0.93975 1.69719 1.37016 1.40524 1.00414 0.85564 0.78743 0.78680 0.78655 1.18105 1.20701 1.18860 0.89216 0.92745 0.89466 0.81522 0.80993 0.80610 0.93256 0.90665 0.76297 0.82007 0.84516 0.87591 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.21 71.24 0.66 -2.01 16 2 C -0.12 -3.29 5.90 -19.77 -0.12 -3.41 16 3 C -0.08 -1.66 9.86 22.47 0.22 -1.44 16 4 C -0.16 -2.96 10.11 22.36 0.23 -2.74 16 5 C 0.07 1.81 11.18 84.69 0.95 2.76 16 6 N -0.50 -16.74 10.27 -183.88 -1.89 -18.63 16 7 C 0.09 2.88 6.15 42.54 0.26 3.14 16 8 C 0.20 7.52 5.17 85.63 0.44 7.96 16 9 N -0.71 -31.23 5.56 -347.38 -1.93 -33.16 16 10 C 0.32 15.50 7.52 134.05 1.01 16.51 16 11 N -0.54 -24.57 9.54 -191.45 -1.83 -26.39 16 12 C 0.02 0.78 11.17 84.78 0.95 1.73 16 13 C -0.18 -7.56 10.08 22.32 0.22 -7.33 16 14 C -0.20 -9.71 7.27 22.89 0.17 -9.54 16 15 C -0.01 -0.65 5.13 -21.06 -0.11 -0.76 16 16 C -0.47 -25.68 8.93 23.37 0.21 -25.47 16 17 H 0.06 3.65 7.04 -2.91 -0.02 3.63 16 18 C 0.05 2.76 5.42 85.25 0.46 3.22 16 19 N -0.85 -46.37 13.93 21.83 0.30 -46.06 16 20 Si 0.96 43.72 24.53 68.60 1.68 45.40 16 21 H -0.26 -10.91 6.71 99.48 0.67 -10.24 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -12.69 6.84 99.48 0.68 -12.00 16 24 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 1.60 6.68 -2.39 -0.02 1.58 16 26 H 0.09 1.67 8.09 -2.38 -0.02 1.66 16 27 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.65 6.69 -2.39 -0.02 2.64 16 32 H 0.40 18.32 6.76 -92.71 -0.63 17.70 16 33 H 0.16 5.33 8.06 -2.91 -0.02 5.31 16 34 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.11 5.03 4.81 -2.91 -0.01 5.01 16 36 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 Total: -1.00 -65.45 302.51 2.30 -63.14 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.42 Total: 33.09 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 5.55 Total: -17.39 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.34 Total: -124.25 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.68 Total: 45.40 kcal Total: -65.45 2.30 -63.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161876538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.842 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds