Wall clock time and date at job start Mon Mar 30 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38678 * 120.41815 * 2 1 4 4 C 1.38627 * 118.41955 * 179.78190 * 3 2 1 5 5 C 1.38229 * 119.15881 * 0.47674 * 4 3 2 6 6 N 1.31852 * 120.76524 * 359.76836 * 5 4 3 7 7 C 1.31888 * 121.72566 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.61462 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47098 * 269.98030 * 8 7 6 10 10 C 1.38364 * 119.99825 * 180.02562 * 9 8 7 11 11 C 1.39714 * 119.43173 * 0.02562 * 10 9 8 12 12 C 1.36555 * 119.49256 * 180.02562 * 11 10 9 13 13 C 1.41325 * 118.41073 * 359.97438 * 12 11 10 14 14 C 1.41203 * 120.57076 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00240 * 155.71938 * 14 13 12 16 16 C 1.39873 * 119.99901 * 335.71554 * 14 13 12 17 17 N 1.30899 * 120.00417 * 343.32985 * 16 14 13 18 18 Si 1.86800 * 119.99638 * 163.32812 * 16 14 13 19 19 H 1.48496 * 109.47414 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47280 * 120.00261 * 18 16 14 21 21 H 1.48505 * 109.47233 * 239.99885 * 18 16 14 22 22 C 1.40748 * 118.86214 * 359.97438 * 13 12 11 23 23 N 1.31490 * 120.36411 * 359.72324 * 22 13 12 24 24 H 1.09005 * 109.47016 * 269.71641 * 1 2 3 25 25 H 1.09003 * 109.46807 * 149.71984 * 1 2 3 26 26 H 1.08999 * 109.47345 * 29.72032 * 1 2 3 27 27 H 1.08002 * 120.78731 * 0.02822 * 3 2 1 28 28 H 1.08000 * 120.41866 * 180.22246 * 4 3 2 29 29 H 1.08001 * 119.61280 * 179.78485 * 5 4 3 30 30 H 1.09001 * 109.46745 * 29.98102 * 8 7 6 31 31 H 1.08999 * 109.46722 * 149.97748 * 8 7 6 32 32 H 0.96999 * 120.00154 * 0.02562 * 9 8 7 33 33 H 1.07993 * 120.25285 * 359.97438 * 11 10 9 34 34 H 1.08008 * 120.79667 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00299 * 180.02562 * 17 16 14 36 36 H 1.07992 * 119.81997 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1476 0.0046 5 6 4.2256 -0.0823 -0.0010 6 7 3.5255 -1.1996 -0.0060 7 6 2.2066 -1.1916 -0.0054 8 6 1.4539 -2.4972 -0.0108 9 7 1.2091 -2.9140 -1.3938 10 6 0.5290 -4.0911 -1.6514 11 6 0.0807 -4.8728 -0.5837 12 6 -0.5901 -6.0350 -0.8365 13 6 -0.8080 -6.4065 -2.1825 14 6 -1.4959 -7.5991 -2.4961 15 1 -1.9996 -7.6981 -3.4463 16 6 -1.5249 -8.6523 -1.5761 17 7 -0.6692 -8.6801 -0.5859 18 14 -2.7848 -10.0190 -1.7605 19 1 -3.6307 -9.7551 -2.9521 20 1 -2.0851 -11.3181 -1.9275 21 1 -3.6407 -10.0702 -0.5480 22 6 -0.3276 -5.5672 -3.2052 23 7 0.3077 -4.4548 -2.9087 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3634 0.8925 -0.5095 27 1 1.6889 2.1424 0.0005 28 1 4.1735 2.0592 0.0084 29 1 5.3046 -0.1285 -0.0009 30 1 2.0439 -3.2587 0.4992 31 1 0.5019 -2.3697 0.5043 32 1 1.5237 -2.3648 -2.1288 33 1 0.2640 -4.5606 0.4338 34 1 -0.9464 -6.6552 -0.0272 35 1 -0.6891 -9.4107 0.0519 36 1 -0.4859 -5.8359 -4.2391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161876860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:21 Heat of formation + Delta-G solvation = 64.419121 kcal Electronic energy + Delta-G solvation = -19044.521156 eV Core-core repulsion = 16107.067996 eV Total energy + Delta-G solvation = -2937.453159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47182 -38.46016 -35.46146 -33.85300 -33.50947 -31.91736 -30.55230 -29.10405 -27.57907 -26.32915 -24.33787 -22.72111 -22.07585 -21.39371 -20.51142 -17.23500 -17.02816 -16.73849 -16.16264 -15.50787 -15.05301 -14.73907 -14.30410 -13.75566 -13.63278 -13.34179 -13.20519 -13.03811 -12.77710 -12.53169 -12.43760 -11.94512 -11.79074 -11.52068 -11.31440 -11.18528 -11.02192 -10.52898 -9.87952 -9.73462 -9.48927 -9.38518 -8.93958 -8.70834 -8.20994 -7.97572 -6.80592 -6.57476 -4.15950 0.93689 1.16160 2.78045 3.01474 3.11568 3.16951 3.31507 3.56626 3.98811 4.16449 4.44080 4.61425 4.68457 4.73820 4.83102 4.89230 5.27706 5.48282 5.49994 5.55977 5.70258 5.82586 5.88655 5.97624 6.09641 6.13843 6.20853 6.51368 6.59284 6.66795 6.90035 7.21119 7.36336 7.44682 7.77591 7.93956 7.95608 8.28077 8.46193 8.68620 8.88207 8.94923 9.75111 10.27179 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044023 B = 0.003471 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.879751 B = 8065.356160 C = 8110.351822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C -0.082 4.082 4 C -0.170 4.170 5 C 0.089 3.911 6 N -0.465 5.465 7 C 0.119 3.881 8 C 0.193 3.807 9 N -0.736 5.736 10 C 0.281 3.719 11 C -0.203 4.203 12 C -0.092 4.092 13 C 0.029 3.971 14 C -0.457 4.457 15 H 0.078 0.922 16 C 0.073 3.927 17 N -0.806 5.806 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.274 1.274 22 C 0.013 3.987 23 N -0.522 5.522 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.389 0.611 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.278 0.722 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 15.410 4.639 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.119 4.119 3 C -0.108 4.108 4 C -0.190 4.190 5 C -0.068 4.068 6 N -0.174 5.174 7 C -0.020 4.020 8 C 0.067 3.933 9 N -0.376 5.376 10 C 0.049 3.951 11 C -0.227 4.227 12 C -0.119 4.119 13 C 0.024 3.976 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.433 5.433 18 Si 0.732 3.268 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.199 1.199 22 C -0.146 4.146 23 N -0.238 5.238 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.222 0.778 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.322 14.921 4.350 16.132 hybrid contribution -0.905 -0.151 0.476 1.034 sum 3.417 14.769 4.825 15.909 Atomic orbital electron populations 1.20866 0.89919 1.03981 1.02802 1.20822 0.97860 0.93398 0.99849 1.21490 0.94164 0.98031 0.97149 1.22142 0.95288 0.99592 1.02001 1.22758 1.00324 0.87626 0.96116 1.67545 1.07808 1.31469 1.10529 1.21268 0.89671 0.94826 0.96187 1.19820 0.97199 0.90487 0.85819 1.43412 1.65732 1.24113 1.04374 1.17689 0.99077 0.88879 0.89451 1.20807 1.06923 0.98287 0.96719 1.21307 0.98760 0.94092 0.97733 1.18362 0.93315 0.94112 0.91805 1.19354 1.29314 0.97664 1.02481 0.90418 1.25850 0.94915 0.99179 0.94334 1.69824 1.29816 1.30952 1.12711 0.86278 0.81028 0.80144 0.79327 1.18495 1.20156 1.19906 1.22193 1.01848 0.92548 0.97965 1.66508 1.18378 1.19256 1.19609 0.90734 0.89809 0.91377 0.84901 0.84914 0.82811 0.91403 0.91422 0.77800 0.88480 0.85448 0.91113 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.21 36.01 0.33 -0.90 16 2 C -0.12 -1.39 5.90 -104.48 -0.62 -2.00 16 3 C -0.08 -0.81 9.86 -39.28 -0.39 -1.20 16 4 C -0.17 -1.59 10.11 -39.44 -0.40 -1.99 16 5 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 6 N -0.47 -6.83 10.27 -9.47 -0.10 -6.93 16 7 C 0.12 1.70 6.15 -82.59 -0.51 1.19 16 8 C 0.19 3.08 4.36 -5.19 -0.02 3.06 16 9 N -0.74 -14.00 5.65 -61.53 -0.35 -14.35 16 10 C 0.28 6.51 7.64 -155.13 -1.19 5.32 16 11 C -0.20 -4.77 9.24 -39.64 -0.37 -5.14 16 12 C -0.09 -2.39 8.74 -39.02 -0.34 -2.73 16 13 C 0.03 0.78 5.59 -106.65 -0.60 0.19 16 14 C -0.46 -12.10 9.07 -37.85 -0.34 -12.44 16 15 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 16 C 0.07 1.84 5.19 -17.34 -0.09 1.75 16 17 N -0.81 -20.92 10.91 55.54 0.61 -20.32 16 18 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C 0.01 0.32 10.97 -16.75 -0.18 0.14 16 23 N -0.52 -13.02 10.37 -11.79 -0.12 -13.14 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.04 6.68 -51.93 -0.35 0.69 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 31 H 0.07 1.00 6.45 -51.93 -0.34 0.67 16 32 H 0.39 7.28 8.58 -40.82 -0.35 6.93 16 33 H 0.10 2.02 6.64 -52.49 -0.35 1.67 16 34 H 0.13 3.37 6.20 -52.48 -0.33 3.04 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -29.82 308.44 -9.45 -39.26 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.20 Total: 11.02 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -4.90 Total: -13.93 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.04 Total: -54.73 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.82 -9.45 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161876860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.681 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds