Wall clock time and date at job start Mon Mar 30 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38678 * 120.41815 * 2 1 4 4 C 1.38627 * 118.41955 * 179.78190 * 3 2 1 5 5 C 1.38229 * 119.15881 * 0.47674 * 4 3 2 6 6 N 1.31852 * 120.76524 * 359.76836 * 5 4 3 7 7 C 1.31888 * 121.72566 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.61462 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47098 * 269.98030 * 8 7 6 10 10 C 1.38364 * 119.99825 * 180.02562 * 9 8 7 11 11 C 1.39714 * 119.43173 * 0.02562 * 10 9 8 12 12 C 1.36555 * 119.49256 * 180.02562 * 11 10 9 13 13 C 1.41325 * 118.41073 * 359.97438 * 12 11 10 14 14 C 1.41203 * 120.57076 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00240 * 155.71938 * 14 13 12 16 16 C 1.39873 * 119.99901 * 335.71554 * 14 13 12 17 17 N 1.30899 * 120.00417 * 343.32985 * 16 14 13 18 18 Si 1.86800 * 119.99638 * 163.32812 * 16 14 13 19 19 H 1.48496 * 109.47414 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47280 * 120.00261 * 18 16 14 21 21 H 1.48505 * 109.47233 * 239.99885 * 18 16 14 22 22 C 1.40748 * 118.86214 * 359.97438 * 13 12 11 23 23 N 1.31490 * 120.36411 * 359.72324 * 22 13 12 24 24 H 1.09005 * 109.47016 * 269.71641 * 1 2 3 25 25 H 1.09003 * 109.46807 * 149.71984 * 1 2 3 26 26 H 1.08999 * 109.47345 * 29.72032 * 1 2 3 27 27 H 1.08002 * 120.78731 * 0.02822 * 3 2 1 28 28 H 1.08000 * 120.41866 * 180.22246 * 4 3 2 29 29 H 1.08001 * 119.61280 * 179.78485 * 5 4 3 30 30 H 1.09001 * 109.46745 * 29.98102 * 8 7 6 31 31 H 1.08999 * 109.46722 * 149.97748 * 8 7 6 32 32 H 0.96999 * 120.00154 * 0.02562 * 9 8 7 33 33 H 1.07993 * 120.25285 * 359.97438 * 11 10 9 34 34 H 1.08008 * 120.79667 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00299 * 180.02562 * 17 16 14 36 36 H 1.07992 * 119.81997 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1476 0.0046 5 6 4.2256 -0.0823 -0.0010 6 7 3.5255 -1.1996 -0.0060 7 6 2.2066 -1.1916 -0.0054 8 6 1.4539 -2.4972 -0.0108 9 7 1.2091 -2.9140 -1.3938 10 6 0.5290 -4.0911 -1.6514 11 6 0.0807 -4.8728 -0.5837 12 6 -0.5901 -6.0350 -0.8365 13 6 -0.8080 -6.4065 -2.1825 14 6 -1.4959 -7.5991 -2.4961 15 1 -1.9996 -7.6981 -3.4463 16 6 -1.5249 -8.6523 -1.5761 17 7 -0.6692 -8.6801 -0.5859 18 14 -2.7848 -10.0190 -1.7605 19 1 -3.6307 -9.7551 -2.9521 20 1 -2.0851 -11.3181 -1.9275 21 1 -3.6407 -10.0702 -0.5480 22 6 -0.3276 -5.5672 -3.2052 23 7 0.3077 -4.4548 -2.9087 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3634 0.8925 -0.5095 27 1 1.6889 2.1424 0.0005 28 1 4.1735 2.0592 0.0084 29 1 5.3046 -0.1285 -0.0009 30 1 2.0439 -3.2587 0.4992 31 1 0.5019 -2.3697 0.5043 32 1 1.5237 -2.3648 -2.1288 33 1 0.2640 -4.5606 0.4338 34 1 -0.9464 -6.6552 -0.0272 35 1 -0.6891 -9.4107 0.0519 36 1 -0.4859 -5.8359 -4.2391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161876860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:21 Heat of formation + Delta-G solvation = 46.784519 kcal Electronic energy + Delta-G solvation = -19045.285849 eV Core-core repulsion = 16107.067996 eV Total energy + Delta-G solvation = -2938.217853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.40003 -40.31508 -37.00875 -35.51608 -34.51427 -33.10227 -32.48892 -30.84696 -28.63974 -27.58516 -26.05629 -24.03549 -23.40021 -22.79995 -22.11905 -19.18548 -18.43810 -17.74317 -17.47741 -17.00566 -16.67599 -15.78200 -15.52673 -15.46458 -15.11601 -14.69186 -14.64842 -14.04259 -13.92172 -13.65165 -13.58309 -13.51467 -13.45920 -13.23242 -12.98834 -12.77619 -12.24893 -12.21047 -11.63410 -11.23789 -10.69251 -10.50241 -10.37007 -10.17394 -9.93241 -9.82485 -8.67741 -8.42203 -6.13359 0.05683 0.34146 0.88844 1.11872 1.42757 1.55687 1.58271 2.25857 2.47533 2.82285 3.01859 3.30297 3.71377 3.80114 3.92610 4.00262 4.13076 4.20201 4.49295 4.56250 4.61117 4.63417 4.73882 4.76694 4.78162 4.83550 4.95968 5.18778 5.24828 5.28852 5.33516 5.41229 5.55678 5.78583 5.86216 5.98754 6.47038 6.57644 6.81410 6.92966 7.04136 7.09356 7.82480 8.40776 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044023 B = 0.003471 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.879751 B = 8065.356160 C = 8110.351822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C -0.081 4.081 4 C -0.154 4.154 5 C 0.074 3.926 6 N -0.503 5.503 7 C 0.090 3.910 8 C 0.195 3.805 9 N -0.725 5.725 10 C 0.287 3.713 11 C -0.206 4.206 12 C -0.106 4.106 13 C 0.000 4.000 14 C -0.490 4.490 15 H 0.078 0.922 16 C 0.032 3.968 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.265 1.265 22 C -0.001 4.001 23 N -0.537 5.537 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.391 0.609 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.286 0.714 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 17.396 5.225 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.174 4.174 5 C -0.083 4.083 6 N -0.213 5.213 7 C -0.047 4.047 8 C 0.070 3.930 9 N -0.364 5.364 10 C 0.053 3.947 11 C -0.230 4.230 12 C -0.133 4.133 13 C -0.005 4.005 14 C -0.521 4.521 15 H 0.096 0.904 16 C -0.181 4.181 17 N -0.465 5.465 18 Si 0.805 3.195 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.190 1.190 22 C -0.158 4.158 23 N -0.253 5.253 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.193 0.807 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.224 0.776 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.400 16.939 4.941 18.186 hybrid contribution -0.773 -0.565 0.341 1.016 sum 3.627 16.374 5.282 17.583 Atomic orbital electron populations 1.20860 0.89144 1.03723 1.03538 1.20983 0.98507 0.93386 0.99429 1.21919 0.94565 0.98464 0.95744 1.22563 0.95463 1.00171 0.99201 1.23243 1.01401 0.87701 0.96000 1.67429 1.08276 1.33677 1.11892 1.20968 0.89903 0.94523 0.99273 1.19863 0.97879 0.91519 0.83738 1.43512 1.64329 1.22531 1.06032 1.18005 0.98082 0.89673 0.88930 1.21006 1.06244 0.97598 0.98136 1.21327 0.99700 0.94915 0.97321 1.18652 0.94406 0.94986 0.92469 1.19594 1.30595 0.98496 1.03404 0.90381 1.26705 0.96403 1.01361 0.93586 1.69874 1.31019 1.32157 1.13465 0.85131 0.78158 0.76727 0.79487 1.18157 1.19440 1.19002 1.22375 1.02145 0.92908 0.98363 1.66585 1.18990 1.19299 1.20445 0.89463 0.92320 0.89329 0.81554 0.81109 0.80706 0.93058 0.90280 0.77562 0.86075 0.86460 0.90322 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.21 71.24 0.66 -1.52 16 2 C -0.12 -2.62 5.90 -19.77 -0.12 -2.73 16 3 C -0.08 -1.29 9.86 22.47 0.22 -1.07 16 4 C -0.15 -2.30 10.11 22.36 0.23 -2.07 16 5 C 0.07 1.52 11.18 84.69 0.95 2.46 16 6 N -0.50 -14.44 10.27 -183.89 -1.89 -16.33 16 7 C 0.09 2.53 6.15 42.54 0.26 2.79 16 8 C 0.20 6.27 4.36 85.63 0.37 6.64 16 9 N -0.73 -27.74 5.65 -348.58 -1.97 -29.71 16 10 C 0.29 13.47 7.64 133.32 1.02 14.49 16 11 C -0.21 -9.83 9.24 22.23 0.21 -9.62 16 12 C -0.11 -5.64 8.74 22.64 0.20 -5.45 16 13 C 0.00 0.00 5.59 -21.18 -0.12 -0.12 16 14 C -0.49 -26.66 9.07 23.39 0.21 -26.44 16 15 H 0.08 4.08 7.90 -2.91 -0.02 4.05 16 16 C 0.03 1.65 5.19 85.23 0.44 2.09 16 17 N -0.84 -44.26 10.91 21.82 0.24 -44.02 16 18 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 22 C 0.00 -0.04 10.97 85.36 0.94 0.89 16 23 N -0.54 -27.26 10.37 -191.21 -1.98 -29.24 16 24 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.41 6.68 -2.39 -0.02 1.39 16 26 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 27 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 28 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.05 1.80 7.90 -2.39 -0.02 1.79 16 31 H 0.08 2.33 6.45 -2.39 -0.02 2.32 16 32 H 0.39 14.69 8.58 -92.71 -0.80 13.90 16 33 H 0.12 5.06 6.64 -2.91 -0.02 5.05 16 34 H 0.12 6.42 6.20 -2.91 -0.02 6.40 16 35 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 36 H 0.14 6.64 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -66.18 308.44 2.20 -63.98 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.31 Total: 34.37 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.46 Total: -19.66 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -5.61 Total: -119.31 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -66.18 2.20 -63.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161876860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.761 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds