Wall clock time and date at job start Mon Mar 30 2020 01:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 7 7 C 1.31889 * 121.72478 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.62036 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.46970 * 269.97914 * 8 7 6 10 10 C 1.38820 * 119.99969 * 180.02562 * 9 8 7 11 11 C 1.39796 * 119.58452 * 359.97438 * 10 9 8 12 12 C 1.38598 * 119.48776 * 179.97438 * 11 10 9 13 13 C 1.38386 * 118.68411 * 0.02562 * 12 11 10 14 14 C 1.40550 * 119.14799 * 0.02562 * 13 12 11 15 15 C 1.41315 * 119.78624 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99559 * 0.02562 * 15 14 13 17 17 C 1.40026 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.30734 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 60.00194 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47197 * 300.00316 * 19 17 15 23 23 N 1.31954 * 119.58475 * 179.72608 * 10 9 8 24 24 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 27 27 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 28 28 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 29 29 H 1.08004 * 119.61152 * 179.78790 * 5 4 3 30 30 H 1.09000 * 109.46940 * 29.97482 * 8 7 6 31 31 H 1.08996 * 109.47332 * 149.97748 * 8 7 6 32 32 H 0.97001 * 119.99531 * 359.97438 * 9 8 7 33 33 H 1.07997 * 120.25708 * 359.96442 * 11 10 9 34 34 H 1.08001 * 120.65696 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.42431 * 179.97438 * 13 12 11 36 36 H 0.97006 * 120.00180 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 7 3.5255 -1.1996 -0.0060 7 6 2.2066 -1.1917 -0.0054 8 6 1.4539 -2.4971 -0.0108 9 7 1.2091 -2.9140 -1.3938 10 6 0.5267 -4.0949 -1.6523 11 6 0.0776 -4.8801 -0.5865 12 6 -0.6039 -6.0585 -0.8469 13 6 -0.8195 -6.4239 -2.1641 14 6 -0.3423 -5.5926 -3.1920 15 6 -0.5545 -5.9531 -4.5419 16 1 -1.0822 -6.8646 -4.7808 17 6 -0.0805 -5.1285 -5.5696 18 7 0.5579 -4.0249 -5.2803 19 14 -0.3604 -5.6055 -7.3539 20 1 -1.8186 -5.7044 -7.6169 21 1 0.2332 -4.5732 -8.2412 22 1 0.2810 -6.9177 -7.6220 23 7 0.3060 -4.4598 -2.9011 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6890 2.1423 0.0005 28 1 4.1735 2.0592 0.0085 29 1 5.3046 -0.1285 -0.0008 30 1 2.0439 -3.2587 0.4992 31 1 0.5018 -2.3697 0.5042 32 1 1.5231 -2.3643 -2.1288 33 1 0.2603 -4.5708 0.4320 34 1 -0.9597 -6.6792 -0.0378 35 1 -1.3470 -7.3365 -2.3991 36 1 0.8866 -3.4539 -5.9923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161883873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:23 Heat of formation + Delta-G solvation = 71.760070 kcal Electronic energy + Delta-G solvation = -19341.910696 eV Core-core repulsion = 16404.775864 eV Total energy + Delta-G solvation = -2937.134832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39077 -38.16972 -35.32366 -33.64067 -33.28886 -31.94310 -30.31028 -28.96340 -27.37855 -25.77392 -25.27706 -22.59792 -21.79846 -21.28349 -20.27590 -17.34687 -16.94935 -16.65892 -15.93831 -15.08757 -14.85417 -14.57448 -14.35942 -13.83808 -13.55569 -13.22174 -13.11010 -12.96949 -12.70154 -12.52631 -12.39341 -11.91010 -11.76371 -11.25152 -11.11954 -10.97415 -10.59633 -10.42185 -9.93245 -9.76715 -9.47101 -9.38674 -8.86097 -8.85182 -7.86954 -7.46537 -6.48110 -6.28394 -4.43461 1.01488 1.24096 2.92704 3.12847 3.15559 3.28046 3.34105 3.64188 4.01593 4.24481 4.52165 4.69123 4.75930 4.87478 4.91477 4.97081 5.35284 5.55609 5.57672 5.63557 5.79491 5.95788 6.04937 6.10489 6.18488 6.19294 6.28254 6.61044 6.67559 6.89280 6.93161 6.97252 7.28837 7.63168 7.84817 7.95519 8.01610 8.19771 8.39216 8.70899 8.84227 9.15706 10.28825 10.44631 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.004753 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.477747 B = 5889.129477 C = 6665.874422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C -0.082 4.082 4 C -0.170 4.170 5 C 0.089 3.911 6 N -0.465 5.465 7 C 0.119 3.881 8 C 0.191 3.809 9 N -0.730 5.730 10 C 0.414 3.586 11 C -0.367 4.367 12 C -0.031 4.031 13 C -0.317 4.317 14 C 0.293 3.707 15 C -0.435 4.435 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.716 5.716 19 Si 0.904 3.096 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.265 1.265 23 N -0.531 5.531 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 10.886 8.212 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.190 4.190 5 C -0.068 4.068 6 N -0.173 5.173 7 C -0.020 4.020 8 C 0.065 3.935 9 N -0.368 5.368 10 C 0.174 3.826 11 C -0.393 4.393 12 C -0.055 4.055 13 C -0.340 4.340 14 C 0.166 3.834 15 C -0.467 4.467 16 H 0.100 0.900 17 C -0.153 4.153 18 N -0.338 5.338 19 Si 0.729 3.271 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.190 1.190 23 N -0.252 5.252 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.826 10.747 7.636 13.727 hybrid contribution -0.540 0.436 -0.321 0.765 sum 3.286 11.183 7.315 13.761 Atomic orbital electron populations 1.20864 0.89936 1.04109 1.02650 1.20816 0.97853 0.93403 0.99751 1.21482 0.94162 0.98024 0.97155 1.22134 0.95284 0.99570 1.02044 1.22742 1.00289 0.87637 0.96158 1.67533 1.07807 1.31474 1.10531 1.21265 0.89677 0.94837 0.96184 1.19850 0.97233 0.90483 0.85930 1.43965 1.64019 1.24111 1.04678 1.18460 0.88289 0.85102 0.90748 1.20601 1.19839 1.02364 0.96523 1.20586 0.94969 0.94479 0.95515 1.21527 1.15084 1.04112 0.93237 1.18181 0.86354 0.85973 0.92860 1.19545 1.31263 1.06508 0.89430 0.89950 1.26040 0.93852 0.94398 1.01032 1.70143 1.22060 1.08056 1.33494 0.86451 0.79599 0.79237 0.81829 1.19023 1.20402 1.19006 1.68193 1.22952 1.18865 1.15215 0.90824 0.89778 0.91342 0.84919 0.84941 0.82846 0.91322 0.91278 0.76984 0.89172 0.88933 0.88738 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.21 36.01 0.33 -1.04 16 2 C -0.12 -1.50 5.90 -104.48 -0.62 -2.12 16 3 C -0.08 -0.89 9.86 -39.28 -0.39 -1.28 16 4 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 5 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 6 N -0.47 -7.29 10.27 -9.47 -0.10 -7.39 16 7 C 0.12 1.82 6.15 -82.59 -0.51 1.31 16 8 C 0.19 3.24 4.37 -5.19 -0.02 3.22 16 9 N -0.73 -15.30 5.67 -61.57 -0.35 -15.64 16 10 C 0.41 10.30 7.65 -155.33 -1.19 9.11 16 11 C -0.37 -8.58 9.34 -38.87 -0.36 -8.94 16 12 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.32 -8.12 9.83 -38.66 -0.38 -8.50 16 14 C 0.29 8.30 6.55 -85.00 -0.56 7.74 16 15 C -0.44 -11.98 9.14 -37.74 -0.34 -12.32 16 16 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 17 C 0.07 1.87 5.50 -17.35 -0.10 1.78 16 18 N -0.72 -19.42 11.46 55.55 0.64 -18.79 16 19 Si 0.90 19.03 29.56 -169.99 -5.02 14.00 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 N -0.53 -14.93 7.89 -10.33 -0.08 -15.02 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.17 6.68 -51.93 -0.35 0.82 16 26 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 31 H 0.07 1.08 6.47 -51.93 -0.34 0.74 16 32 H 0.40 8.61 8.58 -40.82 -0.35 8.26 16 33 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 35 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.27 6.68 8.29 -40.82 -0.34 6.35 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -31.23 310.09 -9.67 -40.90 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.30 Total: 10.69 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -5.12 Total: -13.44 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.11 Total: -56.83 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.23 -9.67 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161883873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.660 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds