Wall clock time and date at job start Mon Mar 30 2020 01:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 7 7 C 1.31889 * 121.72478 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.62036 * 180.02562 * 7 6 5 9 9 N 1.46506 * 109.46970 * 269.97914 * 8 7 6 10 10 C 1.38820 * 119.99969 * 180.02562 * 9 8 7 11 11 C 1.39796 * 119.58452 * 359.97438 * 10 9 8 12 12 C 1.38598 * 119.48776 * 179.97438 * 11 10 9 13 13 C 1.38386 * 118.68411 * 0.02562 * 12 11 10 14 14 C 1.40550 * 119.14799 * 0.02562 * 13 12 11 15 15 C 1.41315 * 119.78624 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99559 * 0.02562 * 15 14 13 17 17 C 1.40026 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.30734 * 120.00107 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47047 * 60.00194 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47197 * 300.00316 * 19 17 15 23 23 N 1.31954 * 119.58475 * 179.72608 * 10 9 8 24 24 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 27 27 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 28 28 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 29 29 H 1.08004 * 119.61152 * 179.78790 * 5 4 3 30 30 H 1.09000 * 109.46940 * 29.97482 * 8 7 6 31 31 H 1.08996 * 109.47332 * 149.97748 * 8 7 6 32 32 H 0.97001 * 119.99531 * 359.97438 * 9 8 7 33 33 H 1.07997 * 120.25708 * 359.96442 * 11 10 9 34 34 H 1.08001 * 120.65696 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.42431 * 179.97438 * 13 12 11 36 36 H 0.97006 * 120.00180 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 7 3.5255 -1.1996 -0.0060 7 6 2.2066 -1.1917 -0.0054 8 6 1.4539 -2.4971 -0.0108 9 7 1.2091 -2.9140 -1.3938 10 6 0.5267 -4.0949 -1.6523 11 6 0.0776 -4.8801 -0.5865 12 6 -0.6039 -6.0585 -0.8469 13 6 -0.8195 -6.4239 -2.1641 14 6 -0.3423 -5.5926 -3.1920 15 6 -0.5545 -5.9531 -4.5419 16 1 -1.0822 -6.8646 -4.7808 17 6 -0.0805 -5.1285 -5.5696 18 7 0.5579 -4.0249 -5.2803 19 14 -0.3604 -5.6055 -7.3539 20 1 -1.8186 -5.7044 -7.6169 21 1 0.2332 -4.5732 -8.2412 22 1 0.2810 -6.9177 -7.6220 23 7 0.3060 -4.4598 -2.9011 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6890 2.1423 0.0005 28 1 4.1735 2.0592 0.0085 29 1 5.3046 -0.1285 -0.0008 30 1 2.0439 -3.2587 0.4992 31 1 0.5018 -2.3697 0.5042 32 1 1.5231 -2.3643 -2.1288 33 1 0.2603 -4.5708 0.4320 34 1 -0.9597 -6.6792 -0.0378 35 1 -1.3470 -7.3365 -2.3991 36 1 0.8866 -3.4539 -5.9923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161883873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:23 Heat of formation + Delta-G solvation = 52.878318 kcal Electronic energy + Delta-G solvation = -19342.729470 eV Core-core repulsion = 16404.775864 eV Total energy + Delta-G solvation = -2937.953606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39563 -40.04553 -36.90243 -35.23790 -34.53120 -33.22233 -32.21047 -30.68461 -28.44542 -27.31777 -26.97102 -23.72877 -23.30070 -22.74097 -22.00605 -19.27401 -18.36891 -17.74480 -17.25187 -16.60444 -16.47850 -16.06877 -15.68531 -15.33961 -15.03452 -14.68284 -14.65115 -14.03667 -13.96327 -13.68591 -13.63404 -13.45991 -13.24595 -12.81764 -12.73129 -12.59694 -12.26176 -12.20013 -11.76397 -11.29657 -10.70363 -10.68919 -10.39031 -9.83773 -9.83425 -9.44043 -8.32109 -8.22057 -6.47623 0.04707 0.33095 1.07365 1.35371 1.41107 1.53375 1.59687 2.25302 2.47674 2.93229 3.03027 3.28789 3.70708 3.90424 3.97871 4.07740 4.11745 4.37548 4.46572 4.55027 4.60385 4.70850 4.74405 4.78011 4.82899 4.98818 5.01538 5.10801 5.16961 5.22926 5.31402 5.36365 5.71599 5.77593 5.96955 6.06265 6.21942 6.52982 6.80722 6.90859 7.03603 7.19906 8.34384 8.51774 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.004753 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.477747 B = 5889.129477 C = 6665.874422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.155 4.155 5 C 0.074 3.926 6 N -0.503 5.503 7 C 0.089 3.911 8 C 0.196 3.804 9 N -0.724 5.724 10 C 0.397 3.603 11 C -0.367 4.367 12 C -0.028 4.028 13 C -0.342 4.342 14 C 0.259 3.741 15 C -0.472 4.472 16 H 0.088 0.912 17 C 0.026 3.974 18 N -0.754 5.754 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.260 1.260 23 N -0.565 5.565 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.388 0.612 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 12.638 8.684 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.174 4.174 5 C -0.084 4.084 6 N -0.213 5.213 7 C -0.048 4.048 8 C 0.071 3.929 9 N -0.359 5.359 10 C 0.156 3.844 11 C -0.392 4.392 12 C -0.052 4.052 13 C -0.365 4.365 14 C 0.132 3.868 15 C -0.504 4.504 16 H 0.106 0.894 17 C -0.196 4.196 18 N -0.376 5.376 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.184 1.184 23 N -0.288 5.288 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.190 0.810 29 H 0.194 0.806 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.021 12.510 8.159 15.467 hybrid contribution -0.517 0.007 -0.306 0.601 sum 3.504 12.516 7.853 15.186 Atomic orbital electron populations 1.20846 0.89236 1.03499 1.03583 1.20987 0.98482 0.93489 0.99459 1.21917 0.94623 0.98433 0.95786 1.22567 0.95418 1.00207 0.99221 1.23252 1.01422 0.87711 0.95984 1.67422 1.08248 1.33696 1.11885 1.21003 0.89947 0.94629 0.99183 1.19904 0.97987 0.91537 0.83496 1.44106 1.62818 1.22700 1.06247 1.18899 0.88523 0.86387 0.90563 1.20944 1.18813 1.02026 0.97459 1.21005 0.93814 0.94639 0.95751 1.21699 1.16235 1.04613 0.93943 1.18677 0.87149 0.86814 0.94142 1.19928 1.32736 1.07528 0.90255 0.89412 1.26973 0.92953 0.93927 1.05706 1.70259 1.22928 1.09188 1.35227 0.85220 0.79759 0.79033 0.75367 1.18202 1.19423 1.18405 1.68164 1.24133 1.19510 1.16999 0.89063 0.92730 0.89539 0.81555 0.81007 0.80620 0.92497 0.90039 0.77872 0.86438 0.85104 0.87802 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.21 71.24 0.66 -1.84 16 2 C -0.12 -2.99 5.90 -19.77 -0.12 -3.11 16 3 C -0.08 -1.52 9.86 22.47 0.22 -1.30 16 4 C -0.15 -2.66 10.11 22.36 0.23 -2.44 16 5 C 0.07 1.68 11.18 84.69 0.95 2.63 16 6 N -0.50 -15.68 10.27 -183.89 -1.89 -17.57 16 7 C 0.09 2.74 6.15 42.54 0.26 3.00 16 8 C 0.20 6.75 4.37 85.63 0.37 7.12 16 9 N -0.72 -31.32 5.67 -348.72 -1.98 -33.30 16 10 C 0.40 20.30 7.65 133.42 1.02 21.32 16 11 C -0.37 -17.10 9.34 22.73 0.21 -16.89 16 12 C -0.03 -1.30 10.15 22.39 0.23 -1.07 16 13 C -0.34 -17.88 9.83 22.87 0.22 -17.66 16 14 C 0.26 15.22 6.55 40.18 0.26 15.48 16 15 C -0.47 -26.89 9.14 23.46 0.21 -26.68 16 16 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 17 C 0.03 1.38 5.50 85.29 0.47 1.85 16 18 N -0.75 -42.23 11.46 21.84 0.25 -41.98 16 19 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 N -0.57 -33.07 7.89 -186.59 -1.47 -34.54 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.52 6.68 -2.39 -0.02 1.50 16 26 H 0.09 1.54 8.09 -2.38 -0.02 1.52 16 27 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 28 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 31 H 0.08 2.56 6.47 -2.39 -0.02 2.54 16 32 H 0.39 17.70 8.58 -92.71 -0.80 16.90 16 33 H 0.12 4.73 6.68 -2.91 -0.02 4.71 16 34 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 36 H 0.27 14.00 8.29 -92.70 -0.77 13.23 16 Total: -1.00 -70.96 310.09 2.45 -68.51 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.31 Total: 36.85 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.20 Total: -19.57 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -5.09 Total: -127.40 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -70.96 2.45 -68.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161883873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.388 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds