Wall clock time and date at job start Mon Mar 30 2020 01:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38228 * 120.42016 * 2 1 4 4 N 1.31853 * 120.76481 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72679 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76375 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.41759 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.79488 * 359.95874 * 7 2 1 9 9 N 1.46499 * 109.47240 * 80.01675 * 8 7 2 10 10 C 1.38370 * 120.00329 * 180.02562 * 9 8 7 11 11 C 1.39710 * 119.42532 * 359.72710 * 10 9 8 12 12 C 1.36572 * 119.48776 * 179.76107 * 11 10 9 13 13 C 1.41316 * 118.40828 * 0.50469 * 12 11 10 14 14 C 1.41207 * 120.56676 * 179.76088 * 13 12 11 15 15 H 1.08001 * 120.00253 * 330.34106 * 14 13 12 16 16 C 1.39874 * 119.99616 * 150.33469 * 14 13 12 17 17 N 1.30895 * 119.99622 * 161.77774 * 16 14 13 18 18 Si 1.86802 * 120.00283 * 341.77898 * 16 14 13 19 19 H 1.48498 * 109.47266 * 95.40511 * 18 16 14 20 20 H 1.48496 * 109.47228 * 215.40696 * 18 16 14 21 21 H 1.48505 * 109.46880 * 335.40566 * 18 16 14 22 22 C 1.40746 * 118.86250 * 359.74423 * 13 12 11 23 23 N 1.31491 * 120.36988 * 359.97438 * 22 13 12 24 24 H 1.08996 * 109.47345 * 269.97469 * 1 2 3 25 25 H 1.09001 * 109.47169 * 29.97893 * 1 2 3 26 26 H 1.09006 * 109.47318 * 149.97716 * 1 2 3 27 27 H 1.07997 * 119.61345 * 0.04660 * 3 2 1 28 28 H 1.08001 * 119.61951 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.41778 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47660 * 200.01924 * 8 7 2 31 31 H 1.09006 * 109.46982 * 320.02041 * 8 7 2 32 32 H 0.97006 * 120.00077 * 0.02562 * 9 8 7 33 33 H 1.07999 * 120.26025 * 0.02562 * 11 10 9 34 34 H 1.07998 * 120.79108 * 180.22299 * 12 11 10 35 35 H 0.97002 * 119.99619 * 179.97438 * 17 16 14 36 36 H 1.07995 * 119.81968 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 -0.0015 6 6 3.5948 -1.1471 -0.0026 7 6 2.2088 -1.1955 -0.0005 8 6 1.4831 -2.5162 -0.0002 9 7 1.0373 -2.8288 -1.3602 10 6 0.3431 -3.9996 -1.6089 11 6 0.0789 -4.8780 -0.5550 12 6 -0.6104 -6.0316 -0.7981 13 6 -1.0250 -6.3008 -2.1219 14 6 -1.7361 -7.4824 -2.4255 15 1 -1.5734 -8.3759 -1.8409 16 6 -2.6512 -7.4957 -3.4832 17 7 -3.0406 -8.6347 -3.9974 18 14 -3.3177 -5.8880 -4.1620 19 1 -2.5138 -5.4773 -5.3410 20 1 -4.7341 -6.0716 -4.5683 21 1 -3.2350 -4.8370 -3.1160 22 6 -0.7175 -5.3708 -3.1326 23 7 -0.0559 -4.2714 -2.8453 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6674 2.1276 0.0008 28 1 5.3047 0.1285 -0.0023 29 1 4.1737 -2.0588 -0.0039 30 1 2.1545 -3.2996 0.3511 31 1 0.6184 -2.4554 0.6607 32 1 1.2287 -2.2149 -2.0865 33 1 0.4135 -4.6444 0.4450 34 1 -0.8292 -6.7238 0.0015 35 1 -3.6755 -8.6439 -4.7307 36 1 -1.0265 -5.5612 -4.1497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162716536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:50 Heat of formation + Delta-G solvation = 64.022315 kcal Electronic energy + Delta-G solvation = -19146.868869 eV Core-core repulsion = 16209.398503 eV Total energy + Delta-G solvation = -2937.470366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53277 -38.85642 -36.01153 -33.94347 -33.06638 -32.16151 -31.30507 -29.55562 -27.67148 -26.47033 -24.20780 -23.05674 -22.43876 -21.37024 -20.72792 -17.67949 -17.01329 -16.84775 -16.48053 -15.70841 -15.22617 -14.96993 -14.36579 -13.98337 -13.85291 -13.64640 -13.48915 -13.00070 -12.87294 -12.75151 -12.63047 -12.28242 -12.10301 -11.83519 -11.62202 -11.05914 -10.87936 -10.50701 -10.06744 -9.77446 -9.61643 -9.49002 -9.06693 -8.92156 -8.59956 -8.21831 -6.96164 -6.92322 -4.35199 0.94688 1.00307 2.48293 2.63450 3.13544 3.21290 3.31743 3.53180 3.97330 4.07883 4.28182 4.48844 4.54084 4.60965 4.77113 4.83818 5.27279 5.35237 5.42844 5.46779 5.51068 5.56894 5.68321 5.78930 5.81664 6.03692 6.08367 6.23821 6.25847 6.46423 6.53988 6.87785 6.98897 7.23894 7.27269 7.74530 7.78796 7.95083 8.26813 8.33720 8.58842 8.75377 9.42459 10.10663 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038476 B = 0.003903 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.543588 B = 7172.887289 C = 7472.808792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.092 3.908 4 N -0.482 5.482 5 C 0.086 3.914 6 C -0.150 4.150 7 C -0.056 4.056 8 C 0.182 3.818 9 N -0.738 5.738 10 C 0.276 3.724 11 C -0.185 4.185 12 C -0.137 4.137 13 C 0.013 3.987 14 C -0.444 4.444 15 H 0.090 0.910 16 C 0.083 3.917 17 N -0.813 5.813 18 Si 0.905 3.095 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.249 1.249 22 C 0.006 3.994 23 N -0.507 5.507 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.392 0.608 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.284 0.716 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 14.146 7.743 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.119 4.119 3 C -0.065 4.065 4 N -0.191 5.191 5 C -0.071 4.071 6 C -0.170 4.170 7 C -0.064 4.064 8 C 0.056 3.944 9 N -0.378 5.378 10 C 0.044 3.956 11 C -0.209 4.209 12 C -0.164 4.164 13 C 0.007 3.993 14 C -0.474 4.474 15 H 0.108 0.892 16 C -0.135 4.135 17 N -0.438 5.438 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.216 1.216 21 H -0.173 1.173 22 C -0.153 4.153 23 N -0.222 5.222 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.879 15.262 7.115 18.591 hybrid contribution -0.871 -0.681 0.008 1.106 sum 7.009 14.581 7.123 17.677 Atomic orbital electron populations 1.20848 0.89932 1.04108 1.02802 1.20903 0.97858 0.93461 0.99638 1.22667 0.89896 0.97403 0.96511 1.67644 1.08376 1.31545 1.11519 1.22715 1.00314 0.87627 0.96418 1.22138 0.94498 0.99879 1.00521 1.20324 0.93785 0.95179 0.97145 1.19908 0.97218 0.91241 0.86003 1.43526 1.64782 1.22365 1.07174 1.17677 0.99321 0.88807 0.89767 1.20753 1.05606 0.97052 0.97482 1.21006 1.02478 0.96794 0.96110 1.18497 0.94917 0.94253 0.91619 1.19223 1.19008 0.96753 1.12403 0.89211 1.26068 0.95349 0.97910 0.94134 1.69717 1.26221 1.27782 1.20040 0.86420 0.77302 0.82686 0.80428 1.19337 1.21580 1.17293 1.22245 1.02505 0.92311 0.98223 1.66523 1.14095 1.21742 1.19826 0.90785 0.91190 0.89922 0.82867 0.82781 0.84539 0.91935 0.91681 0.77396 0.87856 0.87103 0.90523 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.35 36.00 0.34 -0.84 16 2 C -0.12 -1.27 5.90 -104.48 -0.62 -1.89 16 3 C 0.09 0.99 10.86 -17.55 -0.19 0.80 16 4 N -0.48 -5.72 10.36 -13.25 -0.14 -5.86 16 5 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 6 C -0.15 -1.57 9.78 -39.44 -0.39 -1.95 16 7 C -0.06 -0.64 5.29 -104.32 -0.55 -1.19 16 8 C 0.18 2.32 4.17 -5.20 -0.02 2.30 16 9 N -0.74 -12.05 5.13 -61.54 -0.32 -12.36 16 10 C 0.28 5.72 7.64 -155.13 -1.19 4.53 16 11 C -0.19 -3.73 9.24 -39.63 -0.37 -4.09 16 12 C -0.14 -3.07 9.88 -39.01 -0.39 -3.45 16 13 C 0.01 0.32 5.12 -106.65 -0.55 -0.23 16 14 C -0.44 -11.83 9.58 -37.84 -0.36 -12.19 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.17 5.41 -17.34 -0.09 2.07 16 17 N -0.81 -21.55 13.93 55.54 0.77 -20.78 16 18 Si 0.91 20.82 24.52 -169.99 -4.17 16.65 16 19 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.25 -5.97 6.86 56.52 0.39 -5.59 16 22 C 0.01 0.15 8.37 -16.75 -0.14 0.01 16 23 N -0.51 -11.96 10.37 -11.79 -0.12 -12.08 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.08 0.99 6.53 -51.93 -0.34 0.65 16 27 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 31 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16 32 H 0.39 6.35 8.58 -40.82 -0.35 6.00 16 33 H 0.10 1.74 6.64 -52.49 -0.35 1.39 16 34 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16 35 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 36 H 0.13 3.27 4.72 -52.49 -0.25 3.03 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -29.11 303.01 -8.30 -37.41 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.19 Total: 7.88 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -4.70 Total: -15.43 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.20 Total: -51.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.11 -8.30 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162716536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.436 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds