Wall clock time and date at job start Mon Mar 30 2020 01:21:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.38228 * 120.42016 * 2 1
4 4 N 1.31853 * 120.76481 * 180.02562 * 3 2 1
5 5 C 1.31886 * 121.72679 * 0.02562 * 4 3 2
6 6 C 1.38184 * 120.76375 * 0.02562 * 5 4 3
7 7 C 1.38628 * 120.41759 * 180.02562 * 2 1 3
8 8 C 1.50695 * 120.79488 * 359.95874 * 7 2 1
9 9 N 1.46499 * 109.47240 * 80.01675 * 8 7 2
10 10 C 1.38370 * 120.00329 * 180.02562 * 9 8 7
11 11 C 1.39710 * 119.42532 * 359.72710 * 10 9 8
12 12 C 1.36572 * 119.48776 * 179.76107 * 11 10 9
13 13 C 1.41316 * 118.40828 * 0.50469 * 12 11 10
14 14 C 1.41207 * 120.56676 * 179.76088 * 13 12 11
15 15 H 1.08001 * 120.00253 * 330.34106 * 14 13 12
16 16 C 1.39874 * 119.99616 * 150.33469 * 14 13 12
17 17 N 1.30895 * 119.99622 * 161.77774 * 16 14 13
18 18 Si 1.86802 * 120.00283 * 341.77898 * 16 14 13
19 19 H 1.48498 * 109.47266 * 95.40511 * 18 16 14
20 20 H 1.48496 * 109.47228 * 215.40696 * 18 16 14
21 21 H 1.48505 * 109.46880 * 335.40566 * 18 16 14
22 22 C 1.40746 * 118.86250 * 359.74423 * 13 12 11
23 23 N 1.31491 * 120.36988 * 359.97438 * 22 13 12
24 24 H 1.08996 * 109.47345 * 269.97469 * 1 2 3
25 25 H 1.09001 * 109.47169 * 29.97893 * 1 2 3
26 26 H 1.09006 * 109.47318 * 149.97716 * 1 2 3
27 27 H 1.07997 * 119.61345 * 0.04660 * 3 2 1
28 28 H 1.08001 * 119.61951 * 179.97438 * 5 4 3
29 29 H 1.08001 * 120.41778 * 179.97438 * 6 5 4
30 30 H 1.08994 * 109.47660 * 200.01924 * 8 7 2
31 31 H 1.09006 * 109.46982 * 320.02041 * 8 7 2
32 32 H 0.97006 * 120.00077 * 0.02562 * 9 8 7
33 33 H 1.07999 * 120.26025 * 0.02562 * 11 10 9
34 34 H 1.07998 * 120.79108 * 180.22299 * 12 11 10
35 35 H 0.97002 * 119.99619 * 179.97438 * 17 16 14
36 36 H 1.07995 * 119.81968 * 179.97438 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2069 1.1920 0.0000
4 7 3.5254 1.1999 -0.0005
5 6 4.2256 0.0823 -0.0015
6 6 3.5948 -1.1471 -0.0026
7 6 2.2088 -1.1955 -0.0005
8 6 1.4831 -2.5162 -0.0002
9 7 1.0373 -2.8288 -1.3602
10 6 0.3431 -3.9996 -1.6089
11 6 0.0789 -4.8780 -0.5550
12 6 -0.6104 -6.0316 -0.7981
13 6 -1.0250 -6.3008 -2.1219
14 6 -1.7361 -7.4824 -2.4255
15 1 -1.5734 -8.3759 -1.8409
16 6 -2.6512 -7.4957 -3.4832
17 7 -3.0406 -8.6347 -3.9974
18 14 -3.3177 -5.8880 -4.1620
19 1 -2.5138 -5.4773 -5.3410
20 1 -4.7341 -6.0716 -4.5683
21 1 -3.2350 -4.8370 -3.1160
22 6 -0.7175 -5.3708 -3.1326
23 7 -0.0559 -4.2714 -2.8453
24 1 -0.3634 -0.0005 1.0276
25 1 -0.3633 0.8902 -0.5135
26 1 -0.3634 -0.8898 -0.5142
27 1 1.6674 2.1276 0.0008
28 1 5.3047 0.1285 -0.0023
29 1 4.1737 -2.0588 -0.0039
30 1 2.1545 -3.2996 0.3511
31 1 0.6184 -2.4554 0.6607
32 1 1.2287 -2.2149 -2.0865
33 1 0.4135 -4.6444 0.4450
34 1 -0.8292 -6.7238 0.0015
35 1 -3.6755 -8.6439 -4.7307
36 1 -1.0265 -5.5612 -4.1497
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001162716536.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:21:50
Heat of formation + Delta-G solvation = 64.022315 kcal
Electronic energy + Delta-G solvation = -19146.868869 eV
Core-core repulsion = 16209.398503 eV
Total energy + Delta-G solvation = -2937.470366 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.122 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.53277 -38.85642 -36.01153 -33.94347 -33.06638 -32.16151 -31.30507 -29.55562
-27.67148 -26.47033 -24.20780 -23.05674 -22.43876 -21.37024 -20.72792 -17.67949
-17.01329 -16.84775 -16.48053 -15.70841 -15.22617 -14.96993 -14.36579 -13.98337
-13.85291 -13.64640 -13.48915 -13.00070 -12.87294 -12.75151 -12.63047 -12.28242
-12.10301 -11.83519 -11.62202 -11.05914 -10.87936 -10.50701 -10.06744 -9.77446
-9.61643 -9.49002 -9.06693 -8.92156 -8.59956 -8.21831 -6.96164 -6.92322
-4.35199 0.94688 1.00307 2.48293 2.63450 3.13544 3.21290 3.31743
3.53180 3.97330 4.07883 4.28182 4.48844 4.54084 4.60965 4.77113
4.83818 5.27279 5.35237 5.42844 5.46779 5.51068 5.56894 5.68321
5.78930 5.81664 6.03692 6.08367 6.23821 6.25847 6.46423 6.53988
6.87785 6.98897 7.23894 7.27269 7.74530 7.78796 7.95083 8.26813
8.33720 8.58842 8.75377 9.42459 10.10663
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.038476 B = 0.003903 C = 0.003746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 727.543588 B = 7172.887289 C = 7472.808792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.116 4.116
3 C 0.092 3.908
4 N -0.482 5.482
5 C 0.086 3.914
6 C -0.150 4.150
7 C -0.056 4.056
8 C 0.182 3.818
9 N -0.738 5.738
10 C 0.276 3.724
11 C -0.185 4.185
12 C -0.137 4.137
13 C 0.013 3.987
14 C -0.444 4.444
15 H 0.090 0.910
16 C 0.083 3.917
17 N -0.813 5.813
18 Si 0.905 3.095
19 H -0.267 1.267
20 H -0.289 1.289
21 H -0.249 1.249
22 C 0.006 3.994
23 N -0.507 5.507
24 H 0.074 0.926
25 H 0.069 0.931
26 H 0.082 0.918
27 H 0.154 0.846
28 H 0.155 0.845
29 H 0.137 0.863
30 H 0.063 0.937
31 H 0.065 0.935
32 H 0.392 0.608
33 H 0.103 0.897
34 H 0.111 0.889
35 H 0.284 0.716
36 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.391 14.146 7.743 17.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.119 4.119
3 C -0.065 4.065
4 N -0.191 5.191
5 C -0.071 4.071
6 C -0.170 4.170
7 C -0.064 4.064
8 C 0.056 3.944
9 N -0.378 5.378
10 C 0.044 3.956
11 C -0.209 4.209
12 C -0.164 4.164
13 C 0.007 3.993
14 C -0.474 4.474
15 H 0.108 0.892
16 C -0.135 4.135
17 N -0.438 5.438
18 Si 0.732 3.268
19 H -0.193 1.193
20 H -0.216 1.216
21 H -0.173 1.173
22 C -0.153 4.153
23 N -0.222 5.222
24 H 0.092 0.908
25 H 0.088 0.912
26 H 0.101 0.899
27 H 0.171 0.829
28 H 0.172 0.828
29 H 0.155 0.845
30 H 0.081 0.919
31 H 0.083 0.917
32 H 0.226 0.774
33 H 0.121 0.879
34 H 0.129 0.871
35 H 0.095 0.905
36 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 7.879 15.262 7.115 18.591
hybrid contribution -0.871 -0.681 0.008 1.106
sum 7.009 14.581 7.123 17.677
Atomic orbital electron populations
1.20848 0.89932 1.04108 1.02802 1.20903 0.97858 0.93461 0.99638
1.22667 0.89896 0.97403 0.96511 1.67644 1.08376 1.31545 1.11519
1.22715 1.00314 0.87627 0.96418 1.22138 0.94498 0.99879 1.00521
1.20324 0.93785 0.95179 0.97145 1.19908 0.97218 0.91241 0.86003
1.43526 1.64782 1.22365 1.07174 1.17677 0.99321 0.88807 0.89767
1.20753 1.05606 0.97052 0.97482 1.21006 1.02478 0.96794 0.96110
1.18497 0.94917 0.94253 0.91619 1.19223 1.19008 0.96753 1.12403
0.89211 1.26068 0.95349 0.97910 0.94134 1.69717 1.26221 1.27782
1.20040 0.86420 0.77302 0.82686 0.80428 1.19337 1.21580 1.17293
1.22245 1.02505 0.92311 0.98223 1.66523 1.14095 1.21742 1.19826
0.90785 0.91190 0.89922 0.82867 0.82781 0.84539 0.91935 0.91681
0.77396 0.87856 0.87103 0.90523 0.85075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.18 9.35 36.00 0.34 -0.84 16
2 C -0.12 -1.27 5.90 -104.48 -0.62 -1.89 16
3 C 0.09 0.99 10.86 -17.55 -0.19 0.80 16
4 N -0.48 -5.72 10.36 -13.25 -0.14 -5.86 16
5 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16
6 C -0.15 -1.57 9.78 -39.44 -0.39 -1.95 16
7 C -0.06 -0.64 5.29 -104.32 -0.55 -1.19 16
8 C 0.18 2.32 4.17 -5.20 -0.02 2.30 16
9 N -0.74 -12.05 5.13 -61.54 -0.32 -12.36 16
10 C 0.28 5.72 7.64 -155.13 -1.19 4.53 16
11 C -0.19 -3.73 9.24 -39.63 -0.37 -4.09 16
12 C -0.14 -3.07 9.88 -39.01 -0.39 -3.45 16
13 C 0.01 0.32 5.12 -106.65 -0.55 -0.23 16
14 C -0.44 -11.83 9.58 -37.84 -0.36 -12.19 16
15 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16
16 C 0.08 2.17 5.41 -17.34 -0.09 2.07 16
17 N -0.81 -21.55 13.93 55.54 0.77 -20.78 16
18 Si 0.91 20.82 24.52 -169.99 -4.17 16.65 16
19 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16
20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16
21 H -0.25 -5.97 6.86 56.52 0.39 -5.59 16
22 C 0.01 0.15 8.37 -16.75 -0.14 0.01 16
23 N -0.51 -11.96 10.37 -11.79 -0.12 -12.08 16
24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16
26 H 0.08 0.99 6.53 -51.93 -0.34 0.65 16
27 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16
28 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16
29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16
30 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16
31 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16
32 H 0.39 6.35 8.58 -40.82 -0.35 6.00 16
33 H 0.10 1.74 6.64 -52.49 -0.35 1.39 16
34 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16
35 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16
36 H 0.13 3.27 4.72 -52.49 -0.25 3.03 16
LS Contribution 303.01 15.07 4.57 4.57
Total: -1.00 -29.11 303.01 -8.30 -37.41
By element:
Atomic # 1 Polarization: 12.07 SS G_CDS: -4.19 Total: 7.88 kcal
Atomic # 6 Polarization: -10.72 SS G_CDS: -4.70 Total: -15.43 kcal
Atomic # 7 Polarization: -51.28 SS G_CDS: 0.20 Total: -51.08 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.65 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -29.11 -8.30 -37.41 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162716536.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.436 kcal
(2) G-P(sol) polarization free energy of solvation -29.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds