Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 120.41764 * 2 1 4 4 N 1.31853 * 120.76183 * 180.25460 * 3 2 1 5 5 C 1.31880 * 121.72589 * 0.04019 * 4 3 2 6 6 C 1.38174 * 120.77044 * 359.95904 * 5 4 3 7 7 C 1.38625 * 120.42370 * 180.27671 * 2 1 3 8 8 C 1.50702 * 120.78678 * 359.70262 * 7 2 1 9 9 N 1.46505 * 109.46932 * 79.99816 * 8 7 2 10 10 C 1.32211 * 119.99687 * 119.09464 * 9 8 7 11 11 C 1.46917 * 120.83406 * 5.70566 * 10 9 8 12 12 C 1.34379 * 119.36826 * 179.74884 * 11 10 9 13 13 N 1.36424 * 121.22129 * 0.54069 * 12 11 10 14 14 H 0.97003 * 119.09379 * 179.73218 * 13 12 11 15 15 C 1.37773 * 121.82064 * 359.71531 * 13 12 11 16 16 C 1.40171 * 119.74636 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99951 * 202.39595 * 16 15 13 18 18 C 1.40353 * 120.00105 * 22.38846 * 16 15 13 19 19 N 1.30585 * 119.99722 * 17.37796 * 18 16 15 20 20 Si 1.86795 * 120.00096 * 197.37248 * 18 16 15 21 21 H 1.48500 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47061 * 120.00562 * 20 18 16 23 23 H 1.48508 * 109.47140 * 240.00079 * 20 18 16 24 24 C 1.39068 * 120.50964 * 359.97438 * 15 13 12 25 25 H 1.09005 * 109.47209 * 269.72299 * 1 2 3 26 26 H 1.08997 * 109.47132 * 29.72251 * 1 2 3 27 27 H 1.09003 * 109.47153 * 149.71993 * 1 2 3 28 28 H 1.08002 * 119.61331 * 0.27496 * 3 2 1 29 29 H 1.08005 * 119.61469 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.42281 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47271 * 200.00034 * 8 7 2 32 32 H 1.09003 * 109.47501 * 320.00063 * 8 7 2 33 33 H 1.08000 * 120.31911 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.39116 * 180.25340 * 12 11 10 35 35 H 0.96993 * 119.99798 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.62864 * 180.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5253 1.2000 -0.0050 5 6 4.2256 0.0825 -0.0110 6 6 3.5948 -1.1469 -0.0114 7 6 2.2090 -1.1954 -0.0058 8 6 1.4832 -2.5161 -0.0054 9 7 1.0317 -2.8255 -1.3644 10 6 1.4670 -3.9152 -1.9735 11 6 2.3036 -4.8918 -1.2630 12 6 2.7257 -5.9919 -1.9092 13 7 2.4007 -6.2130 -3.2156 14 1 2.7253 -7.0156 -3.6530 15 6 1.6240 -5.3279 -3.9307 16 6 1.3161 -5.5986 -5.2711 17 1 1.0378 -4.7932 -5.9346 18 6 1.3696 -6.9165 -5.7511 19 7 1.3676 -7.9174 -4.9125 20 14 1.4435 -7.2385 -7.5896 21 1 1.4341 -5.9454 -8.3196 22 1 2.6891 -7.9797 -7.9126 23 1 0.2666 -8.0468 -7.9983 24 6 1.1422 -4.1685 -3.3327 25 1 -0.3634 -0.0050 1.0277 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3634 -0.8875 -0.5182 28 1 1.6674 2.1277 0.0045 29 1 5.3046 0.1287 -0.0154 30 1 4.1738 -2.0586 -0.0159 31 1 2.1561 -3.3004 0.3413 32 1 0.6212 -2.4569 0.6591 33 1 2.5731 -4.7295 -0.2298 34 1 3.3372 -6.7121 -1.3860 35 1 1.4042 -8.8281 -5.2442 36 1 0.5328 -3.4736 -3.8914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162723467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = 64.063182 kcal Electronic energy + Delta-G solvation = -19166.538662 eV Core-core repulsion = 16229.070068 eV Total energy + Delta-G solvation = -2937.468594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85864 -38.63047 -35.32951 -33.98575 -32.90523 -31.72042 -30.68882 -28.90148 -27.05704 -26.50375 -24.93896 -22.33744 -21.60334 -21.26627 -19.99381 -18.10567 -16.71276 -16.22133 -16.14661 -15.44650 -14.92436 -14.74056 -14.43027 -13.86272 -13.63332 -13.12366 -13.02128 -12.91271 -12.56519 -12.36811 -12.08404 -11.93092 -11.65200 -11.41287 -11.22316 -10.99655 -10.91173 -10.72036 -10.29536 -9.79974 -9.57574 -9.11357 -9.05008 -8.51313 -8.32254 -7.59112 -7.36395 -6.07111 -4.85529 1.50461 1.70767 2.51655 2.66410 2.84435 2.91351 3.08783 3.59784 4.13918 4.23077 4.54479 4.77515 5.11961 5.16261 5.37070 5.41375 5.46210 5.51996 5.78090 5.86225 5.94723 6.07822 6.11181 6.18491 6.39211 6.44568 6.53615 6.61518 6.67875 6.70832 6.78330 6.96187 7.13449 7.31821 7.57501 7.69084 7.90399 8.16433 8.21906 8.31024 8.72258 8.84236 9.61219 9.63453 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030077 B = 0.003904 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.727287 B = 7171.000075 C = 7315.132725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C 0.086 3.914 4 N -0.497 5.497 5 C 0.082 3.918 6 C -0.169 4.169 7 C -0.011 4.011 8 C 0.092 3.908 9 N -0.664 5.664 10 C 0.287 3.713 11 C -0.306 4.306 12 C 0.129 3.871 13 N -0.601 5.601 14 H 0.414 0.586 15 C 0.331 3.669 16 C -0.464 4.464 17 H 0.104 0.896 18 C 0.077 3.923 19 N -0.812 5.812 20 Si 0.924 3.076 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.357 4.357 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.126 0.874 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.293 0.707 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 2.004 4.367 5.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.124 4.124 3 C -0.071 4.071 4 N -0.206 5.206 5 C -0.074 4.074 6 C -0.189 4.189 7 C -0.020 4.020 8 C -0.039 4.039 9 N -0.392 5.392 10 C 0.126 3.874 11 C -0.336 4.336 12 C -0.001 4.001 13 N -0.212 5.212 14 H 0.254 0.746 15 C 0.222 3.778 16 C -0.497 4.497 17 H 0.122 0.878 18 C -0.142 4.142 19 N -0.439 5.439 20 Si 0.747 3.253 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.386 4.386 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.126 3.363 4.373 6.341 hybrid contribution 0.364 -2.102 -0.329 2.158 sum 3.490 1.261 4.044 5.488 Atomic orbital electron populations 1.20755 0.90456 1.04116 1.01570 1.20773 0.97736 0.93329 1.00547 1.22544 0.89975 0.97217 0.97354 1.67565 1.08401 1.31410 1.13246 1.22534 0.99770 0.87923 0.97197 1.22021 0.95016 0.99208 1.02695 1.20610 0.93180 0.96365 0.91804 1.20741 0.96394 0.90854 0.95871 1.73502 1.34726 1.22837 1.08103 1.20260 0.86204 0.88265 0.92676 1.22274 1.11576 0.99127 1.00622 1.21256 0.96505 0.96888 0.85458 1.42103 1.45285 1.24688 1.09102 0.74587 1.17641 0.84263 0.86033 0.89825 1.19575 1.41613 0.94041 0.94474 0.87772 1.26216 0.90488 0.95469 1.02006 1.69335 1.35707 1.01119 1.37759 0.85974 0.78934 0.79929 0.80486 1.17768 1.19379 1.19467 1.20190 1.20703 1.04062 0.93635 0.92052 0.92090 0.88933 0.83543 0.83531 0.85600 0.94428 0.92648 0.86510 0.85116 0.89614 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.35 36.00 0.34 -1.34 16 2 C -0.12 -2.07 5.90 -104.48 -0.62 -2.69 16 3 C 0.09 1.38 10.86 -17.54 -0.19 1.19 16 4 N -0.50 -8.45 10.36 -13.25 -0.14 -8.58 16 5 C 0.08 1.31 11.18 -17.55 -0.20 1.11 16 6 C -0.17 -2.87 9.78 -39.44 -0.39 -3.25 16 7 C -0.01 -0.20 5.50 -104.32 -0.57 -0.77 16 8 C 0.09 1.80 5.57 -5.19 -0.03 1.77 16 9 N -0.66 -15.46 10.02 -58.40 -0.59 -16.04 16 10 C 0.29 6.84 6.80 -82.74 -0.56 6.28 16 11 C -0.31 -6.29 9.39 -37.43 -0.35 -6.64 16 12 C 0.13 2.44 11.15 -16.87 -0.19 2.25 16 13 N -0.60 -12.71 4.89 -10.83 -0.05 -12.77 16 14 H 0.41 8.36 6.33 -40.82 -0.26 8.10 16 15 C 0.33 7.89 6.37 -84.16 -0.54 7.36 16 16 C -0.46 -10.76 9.03 -38.06 -0.34 -11.10 16 17 H 0.10 2.37 7.91 -52.49 -0.42 1.96 16 18 C 0.08 1.62 5.18 -17.29 -0.09 1.53 16 19 N -0.81 -17.22 11.12 55.57 0.62 -16.60 16 20 Si 0.92 15.99 29.60 -169.99 -5.03 10.96 16 21 H -0.25 -4.47 7.11 56.52 0.40 -4.07 16 22 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 23 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 24 C -0.36 -8.91 9.83 -37.82 -0.37 -9.28 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.09 1.63 6.53 -51.93 -0.34 1.30 16 28 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.04 0.71 5.12 -51.93 -0.27 0.45 16 32 H 0.06 1.04 7.40 -51.93 -0.38 0.66 16 33 H 0.12 2.16 5.90 -52.49 -0.31 1.85 16 34 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.29 5.56 8.29 -40.82 -0.34 5.22 16 36 H 0.11 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -27.03 307.19 -8.72 -35.75 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -4.06 Total: 16.24 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -4.10 Total: -13.59 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.16 Total: -53.99 kcal Atomic # 14 Polarization: 15.99 SS G_CDS: -5.03 Total: 10.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.03 -8.72 -35.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162723467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.812 kcal (2) G-P(sol) polarization free energy of solvation -27.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds