Wall clock time and date at job start Mon Mar 30 2020 01:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 120.41764 * 2 1 4 4 N 1.31853 * 120.76183 * 180.25460 * 3 2 1 5 5 C 1.31880 * 121.72589 * 0.04019 * 4 3 2 6 6 C 1.38174 * 120.77044 * 359.95904 * 5 4 3 7 7 C 1.38625 * 120.42370 * 180.27671 * 2 1 3 8 8 C 1.50702 * 120.78678 * 359.70262 * 7 2 1 9 9 N 1.46505 * 109.46932 * 79.99816 * 8 7 2 10 10 C 1.32211 * 119.99687 * 119.09464 * 9 8 7 11 11 C 1.46917 * 120.83406 * 5.70566 * 10 9 8 12 12 C 1.34379 * 119.36826 * 179.74884 * 11 10 9 13 13 N 1.36424 * 121.22129 * 0.54069 * 12 11 10 14 14 H 0.97003 * 119.09379 * 179.73218 * 13 12 11 15 15 C 1.37773 * 121.82064 * 359.71531 * 13 12 11 16 16 C 1.40171 * 119.74636 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99951 * 202.39595 * 16 15 13 18 18 C 1.40353 * 120.00105 * 22.38846 * 16 15 13 19 19 N 1.30585 * 119.99722 * 17.37796 * 18 16 15 20 20 Si 1.86795 * 120.00096 * 197.37248 * 18 16 15 21 21 H 1.48500 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47061 * 120.00562 * 20 18 16 23 23 H 1.48508 * 109.47140 * 240.00079 * 20 18 16 24 24 C 1.39068 * 120.50964 * 359.97438 * 15 13 12 25 25 H 1.09005 * 109.47209 * 269.72299 * 1 2 3 26 26 H 1.08997 * 109.47132 * 29.72251 * 1 2 3 27 27 H 1.09003 * 109.47153 * 149.71993 * 1 2 3 28 28 H 1.08002 * 119.61331 * 0.27496 * 3 2 1 29 29 H 1.08005 * 119.61469 * 179.97438 * 5 4 3 30 30 H 1.07998 * 120.42281 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47271 * 200.00034 * 8 7 2 32 32 H 1.09003 * 109.47501 * 320.00063 * 8 7 2 33 33 H 1.08000 * 120.31911 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.39116 * 180.25340 * 12 11 10 35 35 H 0.96993 * 119.99798 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.62864 * 180.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5253 1.2000 -0.0050 5 6 4.2256 0.0825 -0.0110 6 6 3.5948 -1.1469 -0.0114 7 6 2.2090 -1.1954 -0.0058 8 6 1.4832 -2.5161 -0.0054 9 7 1.0317 -2.8255 -1.3644 10 6 1.4670 -3.9152 -1.9735 11 6 2.3036 -4.8918 -1.2630 12 6 2.7257 -5.9919 -1.9092 13 7 2.4007 -6.2130 -3.2156 14 1 2.7253 -7.0156 -3.6530 15 6 1.6240 -5.3279 -3.9307 16 6 1.3161 -5.5986 -5.2711 17 1 1.0378 -4.7932 -5.9346 18 6 1.3696 -6.9165 -5.7511 19 7 1.3676 -7.9174 -4.9125 20 14 1.4435 -7.2385 -7.5896 21 1 1.4341 -5.9454 -8.3196 22 1 2.6891 -7.9797 -7.9126 23 1 0.2666 -8.0468 -7.9983 24 6 1.1422 -4.1685 -3.3327 25 1 -0.3634 -0.0050 1.0277 26 1 -0.3633 0.8924 -0.5095 27 1 -0.3634 -0.8875 -0.5182 28 1 1.6674 2.1277 0.0045 29 1 5.3046 0.1287 -0.0154 30 1 4.1738 -2.0586 -0.0159 31 1 2.1561 -3.3004 0.3413 32 1 0.6212 -2.4569 0.6591 33 1 2.5731 -4.7295 -0.2298 34 1 3.3372 -6.7121 -1.3860 35 1 1.4042 -8.8281 -5.2442 36 1 0.5328 -3.4736 -3.8914 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162723467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:55 Heat of formation + Delta-G solvation = 48.219278 kcal Electronic energy + Delta-G solvation = -19167.225705 eV Core-core repulsion = 16229.070068 eV Total energy + Delta-G solvation = -2938.155637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15311 -40.28952 -36.92812 -35.57282 -34.35308 -33.07509 -32.36988 -30.48868 -28.50132 -27.98420 -26.51671 -23.72674 -23.16007 -22.71609 -21.55213 -19.78822 -18.40317 -17.55625 -17.51795 -16.97692 -16.51776 -16.11372 -15.89688 -15.37027 -15.03454 -14.66891 -14.51030 -14.26639 -14.03175 -13.62867 -13.55888 -13.30528 -13.16855 -12.87797 -12.75938 -12.61165 -12.39850 -12.20398 -11.85386 -11.38755 -11.23558 -10.48863 -10.37838 -10.00919 -9.77500 -9.25382 -8.99969 -7.77171 -6.66277 0.24022 0.35461 0.93038 1.08146 1.41773 1.55480 1.60083 2.15524 2.53222 2.87374 2.92870 3.46918 3.60792 3.84567 4.00327 4.11171 4.12777 4.15239 4.37516 4.56594 4.58619 4.76315 4.82626 4.84413 4.88599 4.92509 5.00500 5.04335 5.17268 5.19271 5.37679 5.60577 5.64551 5.78832 5.86581 5.97900 6.08237 6.43529 6.49745 6.99288 7.03992 7.17542 7.91775 8.01577 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030077 B = 0.003904 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.727287 B = 7171.000075 C = 7315.132725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C 0.084 3.916 4 N -0.510 5.510 5 C 0.081 3.919 6 C -0.177 4.177 7 C -0.037 4.037 8 C 0.097 3.903 9 N -0.690 5.690 10 C 0.268 3.732 11 C -0.322 4.322 12 C 0.140 3.860 13 N -0.602 5.602 14 H 0.418 0.582 15 C 0.322 3.678 16 C -0.494 4.494 17 H 0.094 0.906 18 C 0.052 3.948 19 N -0.820 5.820 20 Si 0.994 3.006 21 H -0.263 1.263 22 H -0.253 1.253 23 H -0.265 1.265 24 C -0.401 4.401 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.176 0.824 29 H 0.179 0.821 30 H 0.136 0.864 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.185 0.815 35 H 0.307 0.693 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 1.099 4.458 6.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.072 4.072 4 N -0.219 5.219 5 C -0.075 4.075 6 C -0.198 4.198 7 C -0.045 4.045 8 C -0.034 4.034 9 N -0.418 5.418 10 C 0.106 3.894 11 C -0.351 4.351 12 C 0.011 3.989 13 N -0.213 5.213 14 H 0.259 0.741 15 C 0.212 3.788 16 C -0.525 4.525 17 H 0.112 0.888 18 C -0.167 4.167 19 N -0.447 5.447 20 Si 0.813 3.187 21 H -0.187 1.187 22 H -0.177 1.177 23 H -0.190 1.190 24 C -0.431 4.431 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.193 0.807 29 H 0.196 0.804 30 H 0.154 0.846 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.202 0.798 35 H 0.119 0.881 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.418 2.454 4.501 6.768 hybrid contribution -0.070 -1.835 -0.341 1.868 sum 4.349 0.618 4.160 6.050 Atomic orbital electron populations 1.20707 0.89431 1.03492 1.02661 1.21042 0.98711 0.93393 1.00556 1.22988 0.89952 0.97978 0.96295 1.67652 1.08853 1.31832 1.13533 1.23019 1.01263 0.87211 0.95989 1.22210 0.94606 1.00281 1.02688 1.20668 0.94098 0.96181 0.93594 1.20694 0.96664 0.91922 0.94071 1.73383 1.35184 1.23086 1.10115 1.20434 0.87103 0.89342 0.92544 1.22366 1.11962 0.99208 1.01579 1.21951 0.95429 0.97126 0.84429 1.42107 1.44938 1.24322 1.09957 0.74058 1.17720 0.84488 0.86187 0.90387 1.19753 1.43058 0.95196 0.94538 0.88810 1.26900 0.89323 0.94338 1.06118 1.69308 1.33877 1.01946 1.39582 0.84949 0.79509 0.79352 0.74848 1.18672 1.17729 1.18955 1.20114 1.22954 1.05154 0.94852 0.90032 0.90137 0.92054 0.80659 0.80437 0.84592 0.93859 0.92537 0.84476 0.79820 0.88113 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 9.35 71.23 0.67 -2.48 16 2 C -0.13 -4.54 5.90 -19.77 -0.12 -4.65 16 3 C 0.08 2.59 10.86 84.69 0.92 3.51 16 4 N -0.51 -16.48 10.36 -195.84 -2.03 -18.51 16 5 C 0.08 2.46 11.18 84.67 0.95 3.41 16 6 C -0.18 -5.90 9.78 22.36 0.22 -5.68 16 7 C -0.04 -1.36 5.50 -19.67 -0.11 -1.46 16 8 C 0.10 3.86 5.57 85.63 0.48 4.34 16 9 N -0.69 -33.44 10.02 -338.69 -3.39 -36.83 16 10 C 0.27 13.22 6.80 42.30 0.29 13.51 16 11 C -0.32 -13.10 9.39 23.66 0.22 -12.87 16 12 C 0.14 5.07 11.15 83.10 0.93 5.99 16 13 N -0.60 -25.17 4.89 -188.19 -0.92 -26.09 16 14 H 0.42 16.37 6.33 -92.71 -0.59 15.78 16 15 C 0.32 15.82 6.37 38.88 0.25 16.06 16 16 C -0.49 -23.50 9.03 23.25 0.21 -23.29 16 17 H 0.09 4.51 7.91 -2.91 -0.02 4.48 16 18 C 0.05 2.14 5.18 85.39 0.44 2.58 16 19 N -0.82 -33.63 11.12 21.89 0.24 -33.39 16 20 Si 0.99 31.69 29.60 68.60 2.03 33.72 16 21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 22 H -0.25 -7.46 7.11 99.48 0.71 -6.75 16 23 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 24 C -0.40 -21.29 9.83 23.41 0.23 -21.06 16 25 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 27 H 0.06 2.23 6.53 -2.39 -0.02 2.21 16 28 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16 29 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.04 1.64 5.12 -2.39 -0.01 1.63 16 32 H 0.06 2.18 7.40 -2.39 -0.02 2.17 16 33 H 0.14 4.90 5.90 -2.91 -0.02 4.88 16 34 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.31 10.97 8.29 -92.71 -0.77 10.20 16 36 H 0.08 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -60.50 307.19 2.02 -58.48 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: 0.52 Total: 44.72 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 5.57 Total: -22.10 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -6.10 Total: -114.82 kcal Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.72 kcal Total: -60.50 2.02 -58.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162723467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.695 kcal (2) G-P(sol) polarization free energy of solvation -60.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds