Wall clock time and date at job start Mon Mar 30 2020 01:21:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38235 * 120.41764 * 2 1
4 4 N 1.31853 * 120.76183 * 180.25460 * 3 2 1
5 5 C 1.31880 * 121.72589 * 0.04019 * 4 3 2
6 6 C 1.38174 * 120.77044 * 359.95904 * 5 4 3
7 7 C 1.38625 * 120.42370 * 180.27671 * 2 1 3
8 8 C 1.50702 * 120.78678 * 359.70262 * 7 2 1
9 9 N 1.46505 * 109.46932 * 79.99816 * 8 7 2
10 10 C 1.32211 * 119.99687 * 119.09464 * 9 8 7
11 11 C 1.46917 * 120.83406 * 5.70566 * 10 9 8
12 12 C 1.34379 * 119.36826 * 179.74884 * 11 10 9
13 13 N 1.36424 * 121.22129 * 0.54069 * 12 11 10
14 14 H 0.97003 * 119.09379 * 179.73218 * 13 12 11
15 15 C 1.37773 * 121.82064 * 359.71531 * 13 12 11
16 16 C 1.40171 * 119.74636 * 180.02562 * 15 13 12
17 17 H 1.07999 * 119.99951 * 202.39595 * 16 15 13
18 18 C 1.40353 * 120.00105 * 22.38846 * 16 15 13
19 19 N 1.30585 * 119.99722 * 17.37796 * 18 16 15
20 20 Si 1.86795 * 120.00096 * 197.37248 * 18 16 15
21 21 H 1.48500 * 109.47464 * 0.02562 * 20 18 16
22 22 H 1.48496 * 109.47061 * 120.00562 * 20 18 16
23 23 H 1.48508 * 109.47140 * 240.00079 * 20 18 16
24 24 C 1.39068 * 120.50964 * 359.97438 * 15 13 12
25 25 H 1.09005 * 109.47209 * 269.72299 * 1 2 3
26 26 H 1.08997 * 109.47132 * 29.72251 * 1 2 3
27 27 H 1.09003 * 109.47153 * 149.71993 * 1 2 3
28 28 H 1.08002 * 119.61331 * 0.27496 * 3 2 1
29 29 H 1.08005 * 119.61469 * 179.97438 * 5 4 3
30 30 H 1.07998 * 120.42281 * 180.02562 * 6 5 4
31 31 H 1.09000 * 109.47271 * 200.00034 * 8 7 2
32 32 H 1.09003 * 109.47501 * 320.00063 * 8 7 2
33 33 H 1.08000 * 120.31911 * 0.02562 * 11 10 9
34 34 H 1.08001 * 119.39116 * 180.25340 * 12 11 10
35 35 H 0.96993 * 119.99798 * 179.97438 * 19 18 16
36 36 H 1.08001 * 120.62864 * 180.02562 * 24 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2069 1.1921 0.0000
4 7 3.5253 1.2000 -0.0050
5 6 4.2256 0.0825 -0.0110
6 6 3.5948 -1.1469 -0.0114
7 6 2.2090 -1.1954 -0.0058
8 6 1.4832 -2.5161 -0.0054
9 7 1.0317 -2.8255 -1.3644
10 6 1.4670 -3.9152 -1.9735
11 6 2.3036 -4.8918 -1.2630
12 6 2.7257 -5.9919 -1.9092
13 7 2.4007 -6.2130 -3.2156
14 1 2.7253 -7.0156 -3.6530
15 6 1.6240 -5.3279 -3.9307
16 6 1.3161 -5.5986 -5.2711
17 1 1.0378 -4.7932 -5.9346
18 6 1.3696 -6.9165 -5.7511
19 7 1.3676 -7.9174 -4.9125
20 14 1.4435 -7.2385 -7.5896
21 1 1.4341 -5.9454 -8.3196
22 1 2.6891 -7.9797 -7.9126
23 1 0.2666 -8.0468 -7.9983
24 6 1.1422 -4.1685 -3.3327
25 1 -0.3634 -0.0050 1.0277
26 1 -0.3633 0.8924 -0.5095
27 1 -0.3634 -0.8875 -0.5182
28 1 1.6674 2.1277 0.0045
29 1 5.3046 0.1287 -0.0154
30 1 4.1738 -2.0586 -0.0159
31 1 2.1561 -3.3004 0.3413
32 1 0.6212 -2.4569 0.6591
33 1 2.5731 -4.7295 -0.2298
34 1 3.3372 -6.7121 -1.3860
35 1 1.4042 -8.8281 -5.2442
36 1 0.5328 -3.4736 -3.8914
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001162723467.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:21:55
Heat of formation + Delta-G solvation = 48.219278 kcal
Electronic energy + Delta-G solvation = -19167.225705 eV
Core-core repulsion = 16229.070068 eV
Total energy + Delta-G solvation = -2938.155637 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.122 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.15311 -40.28952 -36.92812 -35.57282 -34.35308 -33.07509 -32.36988 -30.48868
-28.50132 -27.98420 -26.51671 -23.72674 -23.16007 -22.71609 -21.55213 -19.78822
-18.40317 -17.55625 -17.51795 -16.97692 -16.51776 -16.11372 -15.89688 -15.37027
-15.03454 -14.66891 -14.51030 -14.26639 -14.03175 -13.62867 -13.55888 -13.30528
-13.16855 -12.87797 -12.75938 -12.61165 -12.39850 -12.20398 -11.85386 -11.38755
-11.23558 -10.48863 -10.37838 -10.00919 -9.77500 -9.25382 -8.99969 -7.77171
-6.66277 0.24022 0.35461 0.93038 1.08146 1.41773 1.55480 1.60083
2.15524 2.53222 2.87374 2.92870 3.46918 3.60792 3.84567 4.00327
4.11171 4.12777 4.15239 4.37516 4.56594 4.58619 4.76315 4.82626
4.84413 4.88599 4.92509 5.00500 5.04335 5.17268 5.19271 5.37679
5.60577 5.64551 5.78832 5.86581 5.97900 6.08237 6.43529 6.49745
6.99288 7.03992 7.17542 7.91775 8.01577
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.030077 B = 0.003904 C = 0.003827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 930.727287 B = 7171.000075 C = 7315.132725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.135 4.135
3 C 0.084 3.916
4 N -0.510 5.510
5 C 0.081 3.919
6 C -0.177 4.177
7 C -0.037 4.037
8 C 0.097 3.903
9 N -0.690 5.690
10 C 0.268 3.732
11 C -0.322 4.322
12 C 0.140 3.860
13 N -0.602 5.602
14 H 0.418 0.582
15 C 0.322 3.678
16 C -0.494 4.494
17 H 0.094 0.906
18 C 0.052 3.948
19 N -0.820 5.820
20 Si 0.994 3.006
21 H -0.263 1.263
22 H -0.253 1.253
23 H -0.265 1.265
24 C -0.401 4.401
25 H 0.081 0.919
26 H 0.080 0.920
27 H 0.060 0.940
28 H 0.176 0.824
29 H 0.179 0.821
30 H 0.136 0.864
31 H 0.043 0.957
32 H 0.057 0.943
33 H 0.138 0.862
34 H 0.185 0.815
35 H 0.307 0.693
36 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.534 1.099 4.458 6.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.137 4.137
3 C -0.072 4.072
4 N -0.219 5.219
5 C -0.075 4.075
6 C -0.198 4.198
7 C -0.045 4.045
8 C -0.034 4.034
9 N -0.418 5.418
10 C 0.106 3.894
11 C -0.351 4.351
12 C 0.011 3.989
13 N -0.213 5.213
14 H 0.259 0.741
15 C 0.212 3.788
16 C -0.525 4.525
17 H 0.112 0.888
18 C -0.167 4.167
19 N -0.447 5.447
20 Si 0.813 3.187
21 H -0.187 1.187
22 H -0.177 1.177
23 H -0.190 1.190
24 C -0.431 4.431
25 H 0.100 0.900
26 H 0.099 0.901
27 H 0.079 0.921
28 H 0.193 0.807
29 H 0.196 0.804
30 H 0.154 0.846
31 H 0.061 0.939
32 H 0.075 0.925
33 H 0.155 0.845
34 H 0.202 0.798
35 H 0.119 0.881
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 4.418 2.454 4.501 6.768
hybrid contribution -0.070 -1.835 -0.341 1.868
sum 4.349 0.618 4.160 6.050
Atomic orbital electron populations
1.20707 0.89431 1.03492 1.02661 1.21042 0.98711 0.93393 1.00556
1.22988 0.89952 0.97978 0.96295 1.67652 1.08853 1.31832 1.13533
1.23019 1.01263 0.87211 0.95989 1.22210 0.94606 1.00281 1.02688
1.20668 0.94098 0.96181 0.93594 1.20694 0.96664 0.91922 0.94071
1.73383 1.35184 1.23086 1.10115 1.20434 0.87103 0.89342 0.92544
1.22366 1.11962 0.99208 1.01579 1.21951 0.95429 0.97126 0.84429
1.42107 1.44938 1.24322 1.09957 0.74058 1.17720 0.84488 0.86187
0.90387 1.19753 1.43058 0.95196 0.94538 0.88810 1.26900 0.89323
0.94338 1.06118 1.69308 1.33877 1.01946 1.39582 0.84949 0.79509
0.79352 0.74848 1.18672 1.17729 1.18955 1.20114 1.22954 1.05154
0.94852 0.90032 0.90137 0.92054 0.80659 0.80437 0.84592 0.93859
0.92537 0.84476 0.79820 0.88113 0.89806
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -3.15 9.35 71.23 0.67 -2.48 16
2 C -0.13 -4.54 5.90 -19.77 -0.12 -4.65 16
3 C 0.08 2.59 10.86 84.69 0.92 3.51 16
4 N -0.51 -16.48 10.36 -195.84 -2.03 -18.51 16
5 C 0.08 2.46 11.18 84.67 0.95 3.41 16
6 C -0.18 -5.90 9.78 22.36 0.22 -5.68 16
7 C -0.04 -1.36 5.50 -19.67 -0.11 -1.46 16
8 C 0.10 3.86 5.57 85.63 0.48 4.34 16
9 N -0.69 -33.44 10.02 -338.69 -3.39 -36.83 16
10 C 0.27 13.22 6.80 42.30 0.29 13.51 16
11 C -0.32 -13.10 9.39 23.66 0.22 -12.87 16
12 C 0.14 5.07 11.15 83.10 0.93 5.99 16
13 N -0.60 -25.17 4.89 -188.19 -0.92 -26.09 16
14 H 0.42 16.37 6.33 -92.71 -0.59 15.78 16
15 C 0.32 15.82 6.37 38.88 0.25 16.06 16
16 C -0.49 -23.50 9.03 23.25 0.21 -23.29 16
17 H 0.09 4.51 7.91 -2.91 -0.02 4.48 16
18 C 0.05 2.14 5.18 85.39 0.44 2.58 16
19 N -0.82 -33.63 11.12 21.89 0.24 -33.39 16
20 Si 0.99 31.69 29.60 68.60 2.03 33.72 16
21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16
22 H -0.25 -7.46 7.11 99.48 0.71 -6.75 16
23 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16
24 C -0.40 -21.29 9.83 23.41 0.23 -21.06 16
25 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16
26 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16
27 H 0.06 2.23 6.53 -2.39 -0.02 2.21 16
28 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16
29 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16
30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16
31 H 0.04 1.64 5.12 -2.39 -0.01 1.63 16
32 H 0.06 2.18 7.40 -2.39 -0.02 2.17 16
33 H 0.14 4.90 5.90 -2.91 -0.02 4.88 16
34 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16
35 H 0.31 10.97 8.29 -92.71 -0.77 10.20 16
36 H 0.08 4.73 8.06 -2.91 -0.02 4.71 16
Total: -1.00 -60.50 307.19 2.02 -58.48
By element:
Atomic # 1 Polarization: 44.19 SS G_CDS: 0.52 Total: 44.72 kcal
Atomic # 6 Polarization: -27.67 SS G_CDS: 5.57 Total: -22.10 kcal
Atomic # 7 Polarization: -108.71 SS G_CDS: -6.10 Total: -114.82 kcal
Atomic # 14 Polarization: 31.69 SS G_CDS: 2.03 Total: 33.72 kcal
Total: -60.50 2.02 -58.48 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162723467.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.695 kcal
(2) G-P(sol) polarization free energy of solvation -60.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.197 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds