Wall clock time and date at job start Mon Mar 30 2020 01:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48503 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47395 * 300.00322 * 3 2 1 6 6 H 1.48504 * 109.47184 * 60.00380 * 3 2 1 7 7 C 1.40030 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99997 * 197.31085 * 7 2 1 9 9 C 1.41549 * 120.00174 * 17.29707 * 7 2 1 10 10 C 1.41187 * 120.99162 * 23.16255 * 9 7 2 11 11 C 1.36555 * 119.15025 * 180.02562 * 10 9 7 12 12 N 1.32098 * 121.26391 * 359.72163 * 11 10 9 13 13 C 1.32539 * 122.21641 * 0.57466 * 12 11 10 14 14 N 1.39080 * 119.65664 * 179.70533 * 13 12 11 15 15 C 1.46497 * 119.99959 * 179.72619 * 14 13 12 16 16 C 1.50706 * 109.47210 * 179.97438 * 15 14 13 17 17 C 1.38283 * 119.92141 * 90.00067 * 16 15 14 18 18 C 1.38100 * 120.07256 * 179.97438 * 17 16 15 19 19 C 1.38917 * 119.92722 * 359.97438 * 18 17 16 20 20 N 1.39672 * 120.07627 * 179.97438 * 19 18 17 21 21 C 1.38911 * 119.84751 * 0.25043 * 19 18 17 22 22 C 1.38099 * 119.92422 * 359.50139 * 21 19 18 23 23 C 1.38741 * 120.68340 * 359.42623 * 13 12 11 24 24 H 0.96999 * 119.99882 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.42565 * 359.97438 * 10 9 7 26 26 H 1.07991 * 119.37110 * 179.97438 * 11 10 9 27 27 H 0.97001 * 119.99515 * 359.72201 * 14 13 12 28 28 H 1.09001 * 109.47032 * 60.00113 * 15 14 13 29 29 H 1.08992 * 109.47008 * 300.00000 * 15 14 13 30 30 H 1.07997 * 119.96565 * 359.95779 * 17 16 15 31 31 H 1.08005 * 120.04012 * 179.97438 * 18 17 16 32 32 H 0.97002 * 120.00048 * 359.97438 * 20 19 18 33 33 H 0.96992 * 120.00194 * 179.72455 * 20 19 18 34 34 H 1.07993 * 120.03480 * 179.72688 * 21 19 18 35 35 H 1.08006 * 119.96352 * 180.25380 * 22 21 19 36 36 H 1.08000 * 120.66376 * 180.29349 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0509 -1.2340 0.2778 9 6 1.3479 -2.4107 -0.3655 10 6 0.1897 -2.3860 -1.1727 11 6 -0.4170 -3.5643 -1.5017 12 7 0.0623 -4.7222 -1.0840 13 6 1.1421 -4.8058 -0.3200 14 7 1.5970 -6.0530 0.0944 15 6 2.7932 -6.1545 0.9341 16 6 3.0699 -7.6037 1.2413 17 6 3.8792 -8.3449 0.3999 18 6 4.1352 -9.6730 0.6787 19 6 3.5792 -10.2641 1.8062 20 7 3.8356 -11.6073 2.0909 21 6 2.7629 -9.5179 2.6467 22 6 2.5151 -8.1889 2.3647 23 6 1.8266 -3.6623 0.0658 24 1 -0.4850 0.8400 0.0004 25 1 -0.2117 -1.4471 -1.5247 26 1 -1.3033 -3.5495 -2.1186 27 1 1.1222 -6.8556 -0.1724 28 1 2.6310 -5.6107 1.8647 29 1 3.6449 -5.7256 0.4063 30 1 4.3113 -7.8847 -0.4764 31 1 4.7671 -10.2515 0.0210 32 1 4.4023 -12.1285 1.5008 33 1 3.4501 -12.0179 2.8805 34 1 2.3254 -9.9756 3.5215 35 1 1.8838 -7.6071 3.0200 36 1 2.7092 -3.7311 0.6845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162785387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:36 Heat of formation + Delta-G solvation = 50.851723 kcal Electronic energy + Delta-G solvation = -18745.860504 eV Core-core repulsion = 15807.819019 eV Total energy + Delta-G solvation = -2938.041486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50002 -38.29525 -35.74733 -34.25488 -33.41525 -30.88424 -30.56056 -29.80983 -27.46035 -25.81738 -24.63937 -22.82475 -21.62168 -20.89970 -20.43067 -17.59564 -17.19971 -16.97581 -16.11705 -15.27732 -14.87174 -14.69148 -14.49500 -13.94252 -13.55626 -13.47390 -13.44512 -13.04709 -13.00312 -12.70267 -12.33750 -11.87234 -11.34703 -11.18681 -11.04103 -10.94420 -10.82543 -10.58340 -10.21856 -9.74657 -9.36168 -8.92818 -8.83308 -7.88992 -7.82687 -7.59160 -6.78165 -6.36152 -4.49430 1.45543 1.53098 2.83294 3.07291 3.13064 3.14027 3.41865 3.69538 3.77611 3.92335 4.47438 4.76881 4.87225 4.98156 5.07834 5.45053 5.48503 5.73913 5.82361 5.94247 6.05109 6.11983 6.24044 6.28836 6.40766 6.83506 6.84282 6.86783 6.97902 7.03717 7.08098 7.34671 7.35094 7.55838 7.63591 7.91371 8.12780 8.20764 8.52478 8.80424 8.90310 8.98817 9.86739 10.16441 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034060 B = 0.003422 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.892764 B = 8179.408199 C = 8623.653618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.156 3.844 10 C -0.248 4.248 11 C 0.116 3.884 12 N -0.625 5.625 13 C 0.398 3.602 14 N -0.740 5.740 15 C 0.187 3.813 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.202 4.202 19 C 0.213 3.787 20 N -0.882 5.882 21 C -0.201 4.201 22 C -0.052 4.052 23 C -0.336 4.336 24 H 0.281 0.719 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.390 0.610 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.396 0.604 33 H 0.396 0.604 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -14.782 3.900 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.147 3.853 10 C -0.272 4.272 11 C -0.033 4.033 12 N -0.349 5.349 13 C 0.167 3.833 14 N -0.377 5.377 15 C 0.062 3.938 16 C -0.154 4.154 17 C -0.071 4.071 18 C -0.224 4.224 19 C 0.109 3.891 20 N -0.421 5.421 21 C -0.224 4.224 22 C -0.071 4.071 23 C -0.363 4.363 24 H 0.092 0.908 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.223 0.777 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.224 0.776 33 H 0.224 0.776 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.221 -15.261 3.748 16.901 hybrid contribution 0.613 0.882 0.306 1.117 sum 6.834 -14.378 4.054 16.428 Atomic orbital electron populations 1.69821 1.07700 1.29198 1.34216 1.25964 0.94711 1.01425 0.91956 0.86256 0.81049 0.80806 0.78580 1.18318 1.19636 1.19949 1.19610 0.97967 0.90923 1.40272 0.90263 1.17601 0.89865 0.91645 0.86140 1.21777 1.01559 0.98101 1.05788 1.21347 0.97210 0.87905 0.96886 1.66754 1.16620 1.29701 1.21794 1.17968 0.90039 0.84626 0.90627 1.44194 1.30284 1.05275 1.57936 1.19860 0.88259 0.91014 0.94643 1.19779 1.02021 0.96489 0.97082 1.20866 0.95505 0.92949 0.97794 1.20545 1.06811 0.96153 0.98932 1.17811 0.93292 0.84559 0.93438 1.42457 1.58786 1.09224 1.31622 1.20546 1.04854 0.95085 1.01926 1.20880 0.96448 0.93851 0.95909 1.21127 1.07469 0.92172 1.15537 0.90841 0.85963 0.86545 0.77686 0.92286 0.92345 0.85906 0.86439 0.77627 0.77621 0.86427 0.85871 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.30 10.90 55.55 0.61 -19.70 16 2 C 0.08 1.98 5.20 -17.34 -0.09 1.89 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.25 9.12 -37.65 -0.34 -12.60 16 8 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 9 C 0.16 4.28 5.61 -106.56 -0.60 3.68 16 10 C -0.25 -6.66 8.75 -39.07 -0.34 -7.00 16 11 C 0.12 2.93 11.10 -18.04 -0.20 2.73 16 12 N -0.63 -15.84 10.37 -12.82 -0.13 -15.98 16 13 C 0.40 9.64 7.65 -154.97 -1.19 8.46 16 14 N -0.74 -14.50 5.72 -61.65 -0.35 -14.86 16 15 C 0.19 3.07 5.01 -5.19 -0.03 3.05 16 16 C -0.15 -2.09 5.25 -104.58 -0.55 -2.64 16 17 C -0.05 -0.65 9.69 -39.62 -0.38 -1.04 16 18 C -0.20 -2.24 9.90 -39.38 -0.39 -2.63 16 19 C 0.21 2.25 6.75 -83.79 -0.57 1.68 16 20 N -0.88 -6.33 9.09 32.41 0.29 -6.04 16 21 C -0.20 -2.26 9.90 -39.38 -0.39 -2.65 16 22 C -0.05 -0.66 9.69 -39.61 -0.38 -1.04 16 23 C -0.34 -8.59 9.12 -38.44 -0.35 -8.94 16 24 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 25 H 0.12 3.33 6.16 -52.48 -0.32 3.00 16 26 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 27 H 0.39 7.30 8.59 -40.82 -0.35 6.95 16 28 H 0.06 0.99 7.87 -51.93 -0.41 0.59 16 29 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.40 2.15 8.84 -40.82 -0.36 1.79 16 33 H 0.40 2.17 8.84 -40.82 -0.36 1.81 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.10 2.33 6.71 -52.49 -0.35 1.97 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -30.32 311.10 -9.95 -40.27 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -4.23 Total: 15.12 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -5.80 Total: -17.05 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.41 Total: -56.57 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.32 -9.95 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162785387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.125 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds