Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38232 * 119.61769 * 2 1 4 4 C 1.38621 * 119.16255 * 179.97438 * 3 2 1 5 5 C 1.38672 * 118.42360 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.42172 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47296 * 89.99894 * 6 5 4 8 8 C 1.38082 * 120.00162 * 180.02562 * 7 6 5 9 9 N 1.32265 * 119.90748 * 0.29085 * 8 7 6 10 10 C 1.31974 * 121.86938 * 180.29339 * 9 8 7 11 11 C 1.38680 * 121.44305 * 359.67179 * 10 9 8 12 12 C 1.38003 * 119.63103 * 0.02585 * 11 10 9 13 13 C 1.41006 * 118.28241 * 359.97438 * 12 11 10 14 14 C 1.41019 * 120.70970 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99595 * 154.82275 * 14 13 12 16 16 C 1.39945 * 119.99711 * 335.10358 * 14 13 12 17 17 N 1.30861 * 120.00246 * 343.31692 * 16 14 13 18 18 Si 1.86800 * 119.99774 * 163.32272 * 16 14 13 19 19 H 1.48502 * 109.47190 * 59.99561 * 18 16 14 20 20 H 1.48503 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47229 * 299.99763 * 18 16 14 22 22 C 1.38180 * 119.16180 * 0.26517 * 5 4 3 23 23 N 1.31856 * 119.62359 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47192 * 90.00250 * 1 2 3 25 25 H 1.09000 * 109.46505 * 209.99352 * 1 2 3 26 26 H 1.09001 * 109.47216 * 329.99293 * 1 2 3 27 27 H 1.08005 * 120.41195 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.79169 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47193 * 329.99967 * 6 5 4 30 30 H 1.08999 * 109.47620 * 209.99809 * 6 5 4 31 31 H 0.96999 * 119.99732 * 359.97438 * 7 6 5 32 32 H 1.07991 * 119.27772 * 179.69754 * 10 9 8 33 33 H 1.08005 * 120.18490 * 179.97438 * 11 10 9 34 34 H 1.07999 * 120.86568 * 180.02562 * 12 11 10 35 35 H 0.97005 * 120.00428 * 180.02562 * 17 16 14 36 36 H 1.08004 * 119.62201 * 179.70473 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2267 -0.0341 0.0005 6 6 5.7322 -0.0986 0.0005 7 7 6.2202 -0.1195 1.3817 8 6 7.5765 -0.1770 1.6340 9 7 8.4339 -0.2074 0.6273 10 6 9.7375 -0.2683 0.8239 11 6 10.2759 -0.2968 2.1016 12 6 9.4367 -0.2615 3.1966 13 6 8.0463 -0.1966 2.9709 14 6 7.1422 -0.1589 4.0525 15 1 6.1659 0.2850 3.9249 16 6 7.5122 -0.6913 5.2927 17 7 8.5361 -1.5018 5.3776 18 14 6.5445 -0.2451 6.8269 19 1 5.1311 -0.6695 6.6615 20 1 7.1339 -0.9354 8.0022 21 1 6.5988 1.2240 7.0366 22 6 3.4767 -1.1946 -0.0056 23 7 2.1588 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6506 2.1373 0.0004 28 1 4.1365 2.1140 0.0010 29 1 6.1333 0.7751 -0.5133 30 1 6.0572 -1.0033 -0.5133 31 1 5.5904 -0.0921 2.1190 32 1 10.3994 -0.2961 -0.0289 33 1 11.3460 -0.3471 2.2390 34 1 9.8345 -0.2823 4.2004 35 1 8.7924 -1.8711 6.2372 36 1 3.9756 -2.1525 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162865924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = 59.170999 kcal Electronic energy + Delta-G solvation = -19219.625182 eV Core-core repulsion = 16281.944447 eV Total energy + Delta-G solvation = -2937.680735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23978 -38.45028 -35.33082 -33.96936 -32.72087 -32.24950 -30.40775 -29.51062 -27.61015 -25.41778 -24.52492 -23.38514 -21.74928 -21.05560 -20.48973 -17.26032 -16.82856 -16.57195 -16.01460 -15.45511 -15.10411 -14.59841 -14.33692 -13.90857 -13.44877 -13.37460 -13.07245 -12.89971 -12.66095 -12.39487 -12.29235 -11.96633 -11.92264 -11.47348 -11.34405 -11.25930 -10.93313 -10.56641 -9.81838 -9.75497 -9.40213 -9.30849 -8.98348 -8.82452 -8.09959 -7.90506 -6.82249 -6.53125 -4.25278 1.10008 1.33539 2.74198 3.04676 3.06525 3.10393 3.23363 3.74980 3.91119 4.31240 4.57797 4.69423 4.73157 4.94801 4.99899 5.11528 5.41360 5.46356 5.48741 5.65495 5.74340 5.91774 6.03341 6.06144 6.15532 6.21954 6.44156 6.49902 6.75773 6.76804 6.85994 7.10595 7.16245 7.63768 7.79695 7.98655 8.03172 8.25392 8.48463 8.64070 8.77290 8.98049 9.75997 10.19136 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.005470 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.403065 B = 5117.970527 C = 6510.080979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.120 3.880 3 C -0.176 4.176 4 C -0.056 4.056 5 C -0.150 4.150 6 C 0.190 3.810 7 N -0.727 5.727 8 C 0.302 3.698 9 N -0.533 5.533 10 C 0.002 3.998 11 C -0.190 4.190 12 C -0.126 4.126 13 C 0.034 3.966 14 C -0.457 4.457 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.797 5.797 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.265 1.265 22 C 0.121 3.879 23 N -0.488 5.488 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.403 0.597 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.280 0.720 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 3.832 -6.083 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.196 4.196 4 C -0.082 4.082 5 C -0.152 4.152 6 C 0.064 3.936 7 N -0.367 5.367 8 C 0.065 3.935 9 N -0.250 5.250 10 C -0.152 4.152 11 C -0.213 4.213 12 C -0.152 4.152 13 C 0.027 3.973 14 C -0.488 4.488 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.423 5.423 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.037 4.037 23 N -0.198 5.198 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.923 2.915 -6.949 13.270 hybrid contribution 0.366 0.886 1.934 2.159 sum -10.557 3.801 -5.015 12.290 Atomic orbital electron populations 1.20688 0.89115 1.03332 1.02810 1.21294 0.96923 0.88572 0.95002 1.21922 0.94843 0.99131 1.03723 1.21573 0.94158 0.98205 0.94303 1.21166 0.97873 0.94130 1.02034 1.19700 0.85897 1.01822 0.86161 1.43693 1.03314 1.84703 1.04985 1.18454 0.84126 1.01582 0.89325 1.66538 1.03819 1.19708 1.34961 1.21352 0.89893 1.09048 0.94900 1.21414 0.98561 1.06970 0.94340 1.21343 0.92272 1.03634 0.97964 1.17906 0.93400 0.95536 0.90456 1.19093 1.00975 1.34602 0.94159 0.90881 1.25792 0.95050 0.92741 1.00463 1.69797 1.24014 1.21515 1.26990 0.86407 0.80424 0.79833 0.80305 1.19121 1.20333 1.18942 1.22742 0.88904 0.98376 0.93634 1.67548 1.09955 1.29300 1.12971 0.90629 0.90571 0.90880 0.85015 0.84693 0.92257 0.92075 0.76044 0.86478 0.88736 0.85755 0.90867 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.01 0.37 -0.56 16 2 C 0.12 1.52 6.78 -82.58 -0.56 0.96 16 3 C -0.18 -2.07 9.74 -39.44 -0.38 -2.45 16 4 C -0.06 -0.73 9.86 -39.28 -0.39 -1.12 16 5 C -0.15 -2.21 5.27 -104.49 -0.55 -2.76 16 6 C 0.19 3.24 5.83 -5.20 -0.03 3.21 16 7 N -0.73 -14.98 5.60 -61.15 -0.34 -15.32 16 8 C 0.30 7.37 7.52 -155.03 -1.17 6.21 16 9 N -0.53 -12.83 9.54 -11.87 -0.11 -12.95 16 10 C 0.00 0.04 11.17 -17.33 -0.19 -0.16 16 11 C -0.19 -4.48 10.08 -39.50 -0.40 -4.88 16 12 C -0.13 -3.25 8.79 -38.62 -0.34 -3.59 16 13 C 0.03 0.89 5.60 -106.47 -0.60 0.29 16 14 C -0.46 -11.65 8.51 -37.89 -0.32 -11.97 16 15 H 0.07 1.76 6.70 -52.48 -0.35 1.41 16 16 C 0.08 1.89 5.18 -17.33 -0.09 1.80 16 17 N -0.80 -20.34 10.96 55.55 0.61 -19.74 16 18 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 C 0.12 1.79 10.86 -17.55 -0.19 1.60 16 23 N -0.49 -7.26 10.27 -9.47 -0.10 -7.36 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.11 16 27 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.40 8.23 6.67 -40.82 -0.27 7.96 16 32 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.12 3.29 6.26 -52.49 -0.33 2.96 16 35 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -28.84 311.40 -9.43 -38.27 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.31 Total: 12.39 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -4.84 Total: -13.42 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.06 Total: -55.36 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.84 -9.43 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162865924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.441 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds